Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name MTRES1P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:154549487-154550249  UCSC
Coordinates (T2T) chr6:155751501-155752263  UCSC
Coordinates (hg19) chr6:154870621-154871383  UCSC
Strand +
Parental Sequence NM_016487.5
Parental seq. overlap 681 bp
Parental seq. overlap (%) 58.6%
Genomic Region Intergenic
Retrocopy Summary MTRES1P1, located on chr6:154549487-154550249, is a retrocopy of the parental gene MTRES1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MTRES1
Full Name mitochondrial transcription rescue factor 1
Also known as C6orf203|HSPC230|PRED31
Coordinate chr6:107028199-107051586
Strand +
Gene summary Enables ribosomal large subunit binding activity and tRNA binding activity. Involved in regulation of mitochondrial transcription and rescue of stalled ribosome. Located in mitochondrial matrix. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes C6H6orf203P1
Bonobo Pan paniscus MTRES1P1
Gorilla Gorilla gorilla MTRES1P1
Gibbon Nomascus leucogenys MTRES1P1
Green monkey Chlorocebus sabaeus C13H6orf203P3
Crab-eating macaque Macaca fascicularis C4H6orf203P2
Rhesus Macaca mulatta C4H6orf203P2
Baboon Papio anubis MTRES1P3
Golden snub-nosed monkey Rhinopithecus roxellana MTRES1P2
Marmoset Callithrix jacchus MTRES1P3
Orangutan Pongo abelii Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MTRES1P1
GGAGGCCCTGACATACAGGTTATAAGTGCCATGGCTATGACTAGTGTCAAATTGCATGCTGGTGTTTTAAGAAAGCCAGATACCTGGATTGGACTCTCGGGTGTTCTCTGAGGAACACCTTCATCACACAAACTCTGTACTTCCTGGAATCAGTACTTGTATTTTTCTAGTACCAAGTTACATGCACCAAATTATAATACACTTTTCTATAACATTTTCTCACTGAGACTCCCGGGGCTTTTAATATCTCTGGAATATTTTTTTCCATTTTCCATAAGACTCAAAAGTAATATAAGCTCTACAAAATCTACTAAAAAGTATCTGCAAAAAATAGGAGATGAGGAGGACTCTGATGCAGAAAGTGATCAGAACGAGATGAGTGAGCAGGAAGAGGAGCTTGAGGATGGCCTTACTATAGCAAAGACTATCAAGACCTGGAAACAGTAGTGCGGTCTTTTCAGGATGACGTTGTCCTGAAGACAAGCCTGGATATTGGAAGAAACAAAGTGGAAGATGCATTCTGCAAAGGTGAATTCAGGCTGAATGGGGAAAAATTATGGAAGAAAAGCAGAATGGTCAAAGTGGGAGATACATTGGATCTTCTCATTGGAGAGGATAAGGAAGCAGGAACAGAGACAGTGATGCAGATTCTCCCAAAAAAAAGTGTTTGAAGAGAAGGCTGAAAGTGAAAAATACACAGTGGTATTACAGCAGTGGAAAAACTTAAAAATGCCTAAGAAGAGAATGTCTAAATAAACGGATT
>NM_016487.5
GCGCAGATAGGGGTAGCCTGGAGGCCTGCAGTCCGCGCGGCCGCGGGGAGGGACGAGAGGGCCTGACGTACAGATTATAAGCGCCATGGCTATGGCTAGTGTTAAATTGCTTGCCGGTGTTTTAAGAAAGCCAGATGCCTGGATTGGACTCTGGGGTGTTCTCCGAGGGACACCTTCATCATACAAACTCTGTACTTCCTGGAATCGATACTTGTATTTTTCTAGTACCAAGTTACGTGCACCAAATTATAAAACACTTTTTTATAATATTTTCTCACTGAGACTCCCAGGGCTTTTACTATCTCCAGAATGTATTTTTCCTTTTTCCGTAAGACTCAAAAGTAATATAAGGTCTACAAAATCTACTAAAAAGTCTCTGCAAAAAGTAGATGAAGAGGACTCTGATGAAGAAAGCCATCATGATGAGATGAGTGAGCAGGAAGAGGAGCTTGAGGATGATCCTACTGTAGTCAAAAACTATAAAGACCTGGAAAAAGCAGTTCAGTCTTTTCGGTATGATGTTGTCCTGAAGACGGGGCTAGATATTGGGAGAAACAAAGTGGAAGATGCTTTCTACAAAGGTGAACTCAGGCTGAATGAGGAAAAATTATGGAAGAAAAGCAGAACGGTGAAAGTGGGAGATACATTGGATCTTCTCATTGGAGAGGATAAAGAAGCAGGAACAGAGACAGTTATGCGGATTCTCTTGAAAAAAGTGTTTGAAGAGAAGACTGAAAGTGAAAAATACAGAGTGGTGTTACGGCGGTGGAAAAGTTTAAAGTTGCCTAAGAAGAGAATGTCTAAATAAATGGATTGCTTTTTAGCAATAGAGCTGCTTTCTAGTGGTAAAGGAAGGGGTCACCTGAAAAATAGGACATTTTTATTAAAATAAAGTTCTCTTAGCGTTTGTGGAATCTGCCGAGCCATTTTGTGGAAATTGGGATCCATATCTGGAGACACTTCCCAAGGCCTGCCTCACCTCCACCCCCTGCCCACCTTGATCCATGCTCCTTTGACCTCCTCGTGTGAGAACCCCTTTGCCAGAGTGAGACGTGTGCAGAATGAACTAAGCCCCAGAGGGTTTTAATGGCTTGCCTGCTGTTTCCCACATAAACTACCTCAGGAGTCACTGTAAAATAAACTGGCCTTGTTGTCTTA

Publications

PMID - Link Title