Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SAR1AP1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:29075479-29077241  UCSC
Coordinates (T2T) chr6:28950168-28951930  UCSC
Coordinates (hg19) chr6:29043256-29045018  UCSC
Strand -
Parental Sequence NM_020150.5
Parental seq. overlap 1597 bp
Parental seq. overlap (%) 27%
Genomic Region Intergenic
Retrocopy Summary SAR1AP1, located on chr6:29075479-29077241, is a retrocopy of the parental gene SAR1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SAR1A
Full Name secretion associated Ras related GTPase 1A
Also known as SAR1|SARA1|Sara|masra2
Coordinate chr10:70147289-70170514
Strand -
Gene summary Predicted to enable GTPase activity. Involved in COPII-coated vesicle cargo loading. Part of COPII vesicle coat. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SAR1AP2
Bonobo Pan paniscus SAR1AP2
Gorilla Gorilla gorilla SAR1AP2
Orangutan Pongo abelii SAR1AP2
Green monkey Chlorocebus sabaeus SAR1AP3
Crab-eating macaque Macaca fascicularis SAR1AP1
Rhesus Macaca mulatta SAR1AP1
Baboon Papio anubis SAR1AP2
Golden snub-nosed monkey Rhinopithecus roxellana SAR1AP2
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SAR1AP1
GTGTGCTCTGAGGGAGGGCCTGGGCCACCCACCTTTGCTGGAGGAGCCCTTCAGGCCATAATAAGCATGAATAATGTCTTTCCTCTTTGAGTGGATCTACAATGGCTTCAGCAGTGTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACTTGTATTTTTCGGTTTGGACAACGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAACATGTTCCAACACTACATCCGACATCAGAAAAGCTATTAATTGCTGGAATGACTTTTACAACTCTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTATCTCCAAGCAATTAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGTTGAGCTTAATGCTTTAATGACTGATGAAATAATATCCAATGTGCCAATCCTTATATTGGGTAACAAAATAGACAGAACAATGCAATAAGTGAAGAAAAACTCTTTGAGATATTTGGGCTTTCTGGACAGACCACAGGAAAGAGGAACATGGCCCTTTAGGAGCTGAACGCTCACCCCACTGAAGTGTTCATGTGCAGTGTGCTCAAGAGGCAAGGCTAGGGCGAGGGATTCTGCTGGCTCTCCCAATGTATTGACTGATGTTTGGACAGAGAAAATAAGAGTTTTTCTCCTCTGGACTGATCCTGTTCACAGCTTCTTCATGGACTTTTCTAATAGAACAATGAAAGGTCTCCAATCATGTCTAGCATTGAGAAGCCAAGAGTCACTGTCTACTCTCATCACCCAGTGGTGAAATGTTCTCTTCTCCACACTGTTGGGGAGGTAATGCTGCCCCATGTGCTGGTGCAGGTCAGTATCCTGGGGCTTGGAAGCTGGCAGGGGTTGCTGAGTAAAGCTGTGTGCCATTATGGGGCACCTGAAAAGAAAAACACATCTCACCACTCTGGTTGATTTCAAAAGAAAGTGATTCTATTTTTAAAGAAAGTGTTGTTAATATAATTGATACCCCTTCTAACTTTTCGAGTTCAAAATTTACTTAGTCCAGAGTTTTCTATTCTTTTTTAAACTAATGAATGACATTTAGATACTTCATAAAATTATGAACAGATACACATTGGAGGCCAGAGCTCATTTGGGTAAACTCACTCCTGCTGAGTTAGCAGGTTGGTGAGAGAAGCTCCCCTGAGCTCACCTGTCTCTCTAACTGCCTTGGAGAAGGTGGCATTACCTTGTGAACAGAGAACCAGAAAAGGGGCAGAATCCTGGCCTTGTAATTGCGGCAGGTTTCCACTGTGGTAAGCTAGGGTCATTCCTTCTCAAGGAATGTGTAGCAGATCATTCACTATTGAGCAGTTAATTATAGTGTAAGTTACTGTTATTATTCTTATTTATAAAGTTATAGGTTTCATCCAGTCTTTACTTTTATACTTTGGTGAAATTTTATTTCCCTCTATAGCACCTTCCTTTTTCATTTTCAGTTATAAAAAGTAACTTTCACCTCATGAAAAAGTTGAGAACATCTCTTATGTTGTCACATACTGCAGGTGTGTCAGTTACTTTTGCACAGATTCTAGAGGAAAATTTTTCTGAATAGGAAGACAGGACAAAGTTAACAGCTTAAGGGCTCTTAATTCTGGGAGTTGAGGACTTAAATGTATTGTAGCACTTGTCTGAATGCAGGAAAAATTTACTCACTGGGCTTTAAAATTTCCATTTGCAGAATTTGGTCTCTA
>NM_020150.5
GTACATCCGGCGAGTAGCTGGCGGTCCCGGGTGCTGCTGGTTAGTGTGCTCTGAGGGAGGGTCCGAGCCAGCCGCTGTTTTGCCGGAGGAGCCCCTCAGGCCGTAGTAAGCATTAATAATGTCTTTCATCTTTGAGTGGATCTACAATGGCTTCAGCAGTGTGCTCCAGTTCCTAGGACTGTACAAGAAATCTGGAAAACTTGTATTCTTAGGTTTGGATAATGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGCCAACATGTTCCAACACTACATCCGACATCAGAAGAGCTAACAATTGCTGGAATGACCTTTACAACTTTTGATCTTGGTGGGCACGAGCAAGCACGTCGCGTTTGGAAAAATTATCTCCCAGCAATTAATGGGATTGTCTTTCTGGTGGACTGTGCAGATCATTCTCGCCTCGTGGAATCCAAAGTTGAGCTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTAACAAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTCCGTGAGATATTTGGGCTTTATGGACAGACCACAGGAAAGGGGAATGTGACCCTGAAGGAGCTGAATGCTCGCCCCATGGAAGTGTTCATGTGCAGTGTGCTCAAGAGGCAAGGTTACGGCGAGGGTTTCCGCTGGCTCTCCCAGTATATTGACTGATGTTTGGACGGTGAAAATAAAAGAGTTTTACTTCTCTGGACTGATCCTATTCACAGCTTCCTCATGAACTTTTCTAATAGAACAAGGAAAGCTCTCCAACCATGTCTGGCGTTGAGAAGCCAAGAGTCTCTGTCAACTCTCTCATTGCCCAGTGGTGACATGTGCTCTTCTCCACACTGTTGGGAGGTAATGCTGCCCCACGTGCTGGTGCAGGTCAGTATCCTGGGACTTGGAAGCTGGCAGGATTTGCCGGGTAAAGCTGTATGCCATCATGGGGCACCTGAAAAGAAAAACACGTCTCACCACTGTGGTTGATTCAAAAGAAAGTGATTCTATTTTTTAAAGAAAGCGTTGTTAATGTAATTGGTATCCCTCCTAACTTTTTGAGTTCACAATTTACTTGGTCCAGAGTTTTCTATTCTTTTTTTTTTTTAAACTAATGAATGACATTTAGATACTTCATAAAATTATGAACAGATATGGAGGCCAGAGCTCATTTGGGTAAACTTACTCCTGCTGAGTTAGCAGGTTGGTGAGAGAAGCTCCCCTGAGCTCACCTGTCTCTCTGACTGCCTTGGAGTAGGTGGCATAACCTTGTGCACAGAGAACTAGAAAAGGGGCAGAACCCCGGCCTTGCAGTTGTGGCAGGTTTCCACTGTGGTAAGCTAGGTTCATTCCTCATCAAGGAATGTGTAGCAGATTGTTCACTGTGGAGGAGTTAATTATAGAATGGGTTATTGTTGTTATTCTTACTCATGAAGTTACAGATTTTAGCCAGTCTTTGCTTTTATACTTTTGTGAAATTTAATTTCTCTCTATAGCACCTTCCTTTTTCGTTTTCAGTTATCAAAAGTGACTTTGACCTCATAAAAGAGTTGAGAACATCTCTCGTGTCACATACTGCAGGTGCATCAGTTACTTTTGCACAGATTCTAGGGGGACATTTTTCTGAATAGGAAGACAGGACAAAGTTAACAGCTTAAGGGCTCTTAATTCTGTGAGTTGAGGACTTAAAAGTATTGTAGCATTTGTTTGGATCCATGAAAAATGTATTCAGTGGGCTTTAAAATTTCCATTTGCAGAATTTGGTCTCTCAGGCTGTTTGGGAGCTCTTTTTTTTACATTTTTTCTCCTTTGACACCTATTTTATTGGTGTTTAAAGTAAAGGTTAACATCTGTAGCTTTTCCAGGtttttttttttttttttttttttttGGTATGAAATTGTCTTTCTCCATTGCAGAAATAAGCTAGGGAAACACTAACCCAAAAACTTTCTGTAGAGCTGTTCCTTTGGAGGCAGCATCACTTATTGGCAGTAAAGACTCAGTATAAAAGCACCGGCATCCCTACTTGGGTGATGGGGATTAATTTTATAGCATTCCATTTTCCTAGTGCCACATGTGAAATTGGATTTTGATGATCTTAATCTATATTCTACCCTTATAATAAAAGATCAAAAGATATATCTCCTATGAACAGATTGGAGATAGGAGATGAAAAGTTGGGAGGATGTCTTTATTCTAATGTGAGGGTAGGGAAAATGTGGATAACATTACTGGGGTGAGGGAGGCATTGTTCTTTAGTTGGAGTTCTCATTCTTATTCTCCAGTACTGACTTGTGGGGAAAGCATACTTTTTCACTGCCAGGTACTGAATGCAGAGGCTCAGTGAAGTATATATGTGGGAAGTGCATGCATTTCGTTTATTAGCAAACATAGCTGGATTAAGACAAAGTTGTTGGTTTGGAAAGGGGTTAAAGCCTTAAGTGAACAAATCTAGCTAACAGTGAATGAACTAGGTAATATAACTTGCATATTTTTAATTTCCTTTGGTTAAAGGTCCCCCATACTTCTCTGTTCGGAGACATGAGAAGTATGATTACTTCAGTGTTAGTTTTCTTAATTTTTTTTTTCCCCTATTTGTCCCTTGTCACTTTGTTGCAAGCTAGAAATCTGTGGGTTATACATAGGGCAGCTCTTTGTGAAAGTGGTTTATTCCACTGGAGAAAGGGGATTGAAAATCAGTTAGAACCAATGTATTTCTTGCCCCACGGAACACTATTCCTATAAGATAGCTGAAAGAAGCTGCTGTGAGGAGCTCAGCTCCAAACACAGGATCAGCACCTTGTATAGGAATTCCCATGAATTATGacttctcattctgttttatcagagtgcatatatgtcctacttcaggaaaagtaaaacagtcatttacgaaagaaagtcaatctgtatcctaagcattttaataaaaagttaaaacaaaTACGCTATTTCCTTTTTTTTTTTTCATTGGTTTGTTCTGAGCTCTGAGTTTGAACAATGCCGTTTATTTGGGGAGGCAACCAAAAGTTCCCTGCATAGAGGAAGAGACATTTAGGGTGCGTGTGAGATACTTGAATTTTGCCACCAGGAGGGGGAAAAAGGCTGGGGTACTAGAAGTAATAGATTTAGTACTACTTGAGAGATTTGGAACATGCTGTGGACCCAGGGTTGTTGGTCATCTCTGCAACAGGATGGGGATGGCAGATGTTTGAGCAAAATCTATATTAACATGCTAGCAAGGACTAGTTCTAGTTTAGCTGTGTTTCACTCATTTTACACAGAATTAGAATTggccaggtgtggtggctcacgctgtaatcctagcactttgggaggctgaggtgggtggattgtctgagctcaggagtttgagaccagcctggggaacagggtgaaaccccatcactactaaaatacaaaaaaattagctgggcattgtggtacatggagtagctcccagctactctggaggctgaggcggagaatcgcttgaactaggaggtggagattgaagtgagccgagatcatgccactgtactcctgcctgggtgacagagcaagactctctctagctcaaaaaaaaaaaaaaaaaaaaaaTCAATTAAATGCTACATTTGGCAAAATGAGAAAGAAAGAATTTCCTTTACTAGGCTTGTAGGAAGACTGCTTTTACAAAAACCCAAATGAGATCATAAAACTAAAGTACTGGGACAAACAGTGGGAAACAGTGCAATGGGTTCTTTTCAACCAAGTATTAAAGTATTGGAGATATTgccgggcgcggtggctcacgtctgtaatcctagcgctttgggaggccaaggcgggcgggtcatgaggtcaggagttcaaggccagcctgaccaacatggcagagctccgtctctactaaaaatacaaaaattagccaggcacggtgggacgcacctttaatcccagctactcaggaggctgaagcaggagaatcgcttgaatcggggaagcggaggttgcagtgagccgagatcgcgccactgcactccagcctgggtgactcccatctcaaaaaaaataaaaaGTACTGGAGGTGTCCTGTTGTCCTTGTTACTGTGAAAGGATGCCATGGGTTGTATGGGCAAATGAGTTGTTTTGTTTGAGGCAGAGTGGAAAATAAGATTAGGCTCAGTCCATGAGCCTAGCACTCAACAGATCTTACTTTGGCGTTCTGGCTGTGACTTGGGACTTCTTTTTACCATGGTCTGCTGTAAACACAGAAAAACCCAATGCCTAACAGTTCATGCTGGAGTCTTGAGCGTTGAGGGAGAATCACTGGACTCGAGAGAGAAAgtttgtttgtttgtttgtttgtttgttttttgAGTTggtctcactctgtcgcccaggctggagtgcagtggtatgaacataggtcactgcagccttgacctcctgggcttaagtgatcctcccatctcagcctcccaagtagcttgggaccacagggttgcaccaccgtgctcagctagttttcaaaatttttgtagagttaaggtctcatcatgttgcccaggctggtctcaaactcctgggctcaggaaattctcctacctcagcctcccaacgtgctgggattccaagtgtgagcccctgtgctcCACCAAGAGAAAAACTCTTTGATTGCTAGGAAGTTGGGATAAAGAAATTGTGCTGTGATCAAGCCACCTTCTGTGTCATAGAACCAAAAGAAGACCGCCTGCTATGGCAAGATGGCCTAATTTTATTCCTGCCTCATACTATCATGGATAATCGTTTTCCTTTCTCTAGCAGGTTTGTGTCACTGGGAGTACTGGGAGCATTATCCTGTGTTGTGCTGGGGTTATACCAAGCAGTGTTAACTTTATTTAAAGAATTCAGGCAGAAAGATTAGAGAATTTAAGTAGCAATTGTATATGGTAAGCAATACAGTAACCTTAATAAAAATTAATGATggccgggtacggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtggcaggcgcctgtagtcccagcgactggggaggctgaggcaggagaatagcgtgaacccaggaggcggagtttgcagtgagcggagatcgcaccattgcactccagcctgggcgacagagcgagactccgtctcaaaaaaataaataaataaataaaaaataaTGTGTATTTTATCAATTCAGTGATAAAGCAGACCTTTGTAAACTGTCTAGCTTGTGGTGACTGATTGAGGGTATCATGAAGCTCCGCGCCCCCCCACTCCCCGACATACTCGTTCATCCTCCTCTGTCCTAAAGCGTACTTCTTTGGAAAAGTAGAGCAGTTTATGTTAGTGTACACTAGAGATggtaaactatgccttgtgggtcaaatcgggcctgctgcctgtgtttgtatggcctgtgagcaaagaaaggtttttacatatttaaatggttggaaaaaatatttaaagaatgctatttttggacacaaaaaattgtatgaaattaaaatttcaatgtctgtatctttttattgggacacagccaccgccattcctttagcttttgtatgcaacagctgcagagttgactatttgagacaagttgtatggtccccccaaactggaactgtttccattctggccttctacagaaagtatttggacccTGGCCTAGATAAATCCTGGCTGGTGGTTATGTTATGTGAAATGTGCACACTGTAAAATATAGGCCTGTATGATTAAAATTTTTGATTTCA

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