Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PRR11P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:48951742-48952532  UCSC
Coordinates (T2T) chr6:48793729-48794519  UCSC
Coordinates (hg19) chr6:48919379-48920169  UCSC
Strand -
Parental Sequence NM_018304.4
Parental seq. overlap 666 bp
Parental seq. overlap (%) 10.7%
Genomic Region Intergenic
Retrocopy Summary PRR11P1, located on chr6:48951742-48952532, is a retrocopy of the parental gene PRR11. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PRR11
Full Name proline rich 11
Also known as -
Coordinate chr17:59155355-59206709
Strand +
Gene summary Involved in regulation of cell cycle. Located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PRR11P1
Bonobo Pan paniscus PRR11P1
Gorilla Gorilla gorilla PRR11P1
Orangutan Pongo abelii PRR11P1
Green monkey Chlorocebus sabaeus PRR11P1
Crab-eating macaque Macaca fascicularis PRR11P1
Rhesus Macaca mulatta PRR11P1
Baboon Papio anubis PRR11P1
Golden snub-nosed monkey Rhinopithecus roxellana PRR11P1
Marmoset Callithrix jacchus PRR11P1
Mouse lemur Microcebus murinus PRR11P1
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PRR11P1
GCTCAGAAAATCCAATCTCACTAAAGCATTTCACGCTGGATCATTAGTAAGAGATGGACCCATACAGATTACAGTTAAAATCTACTGACTGTGACATTAAAGAAGACACAGAATTTCAATGGAAGGGAAAGCCTGTACCATCACCAAAGGCATGGAATCCACTAGTTACTGTCTTGAACCTGCAGTATGTTATCCTAAAACCTAACTGTAGTGTTAGCAGCCCAAGTTACAAATGTCTTAATTATTCCTACTAAAAGCCAGATAGATGGGAAGAAACTGCTGACAAAAGTCGATGTAGAGAGGAGCCCAGGTAGAACCTCTCTTTTCAATACAGAAAATATGGAAACAGAAACTGGACTGATCCCAGTAATAACCTGGCCCTTGAGGAGAAAGTTACAGCAGGCTCACCCTAGAGGCCCAACACACACACTGCCACTTTCTACAATAGCTTTAATGAATGAGATGGATGCCATCTCTGCCTGACTCCATGCGATGATCCATAAAGTATACAGATAAAACCACCCAAATCCTTTGTGCAGAAATATTTTATAATAATGCCACTTCAAGAATTAGAGCAGGTATGGAGCCCAAACTTACTGTGATAATAAAGTGGGTAATGGGATATTTTCTGATTCTCATGATCAGTAAGAGAACCAGATGGGAAAATGTAATCTCCAAAGTAATGTTTATCCTGGAATAATCCAATTTAGGTTAGAGATATTGTTCAAATTTGACCAGATAACTCTAGTTTGTACTGGATAGGTACATTATGACGTTAAGAAAATAGCCTG
>NM_018304.4
CTTTATGGCGTGGGAGAGGCCACAGCCCGGACTCCATCGACTCCCCCGGCTCTTAGACTAAAATCATGCCCAAGTTCAAACAACGAAGACGAAAGCTAAAAGCCAAAGCCGAAAGATTATTCAAAAAAAAAGAAGCCTCTCACTTTCAGTCCAAGCTAATTACACCTCCTCCTCCACCACCCTCACCAGAAAGAGTCGGTATTTCTTCAATAGATATATCTCAAAGCAGAAGCTGGCTAACATCATCCTGGAACTTCAATTTTCCTAACATCAGAGATGCAATAAAACTTTGGACAAATAGAGTATGGTCTATATACAGCTGGTGCCAGAACTGCATAACCCAGAGTTTAGAAGTATTGAAAGACACCATCTTTCCATCTCGTATCTGCCACCGAGAACTTTACAGTGTAAAACAACAGTTTTGCATTTTGGAAAGTAAATTATGCAAGCTCCAGGAAGCACTGAAGACCATCTCAGAAAGTTCTTCCTGTCCAAGCTGTGGTCAAACATGTCACATGAGTGGTAAACTTACAAATGTGCCTGCCTGCGTTCTGATCACCCCTGGAGACTCCAAAGCTGTGCTTCCTCCCACACTGCCACAGCCAGCCAGCCATTTTcctcctcctcctccacctccacctctgccacctcctccaccaccactagcaccTGTGTTGCTCAGAAAACCCAGTCTCGCTAAAGCACTTCAGGCTGGACCATTAAAAAAAGATGGACCCATGCAGATAACAGTTAAAGATCTGCTGACTGTAAAATTAAAGAAGACACAGAGTTTAGATGAAAAGAGGAAGCTTATACCATCGCCGAAAGCACGGAATCCACTAGTTACCGTCTCTGACTTGCAGCATGTTACCCTGAAACCTAACTCCAAAGTGTTATCGACTCGAGTTACAAACGTCTTAATCACTCCTGGAAAAAGTCAGATGGATCTGCGGAAACTGCTTAGAAAAGTCGATGTAGAGAGGAGCCCAGGTGGAACCCCTCTTACCAATAAGGAAAATATGGAAACAGGAACAGGACTGACTCCAGTGATGACGCAGGCCTTAAGGAGAAAGTTTCAGCTGGCTCACCCTAGAAGCCCAACTCCAACTCTGCCACTTTCTACAAGCAGCTTTGATGAACAAAACTGATGCCAACTCTGCCTCACTCCATGAGATGATCCATAACAAATACAGATAAAAACACCCAgctgggtgcagtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaactccttccccactaaaaatacagaaattagctgggcatagtggcgggtgcctgtaatcccagctatgcgggaggctaaggcaggagaattgcttgaacccaagaggcagaggttgcagtgagccaagatcgcgtcattgcactccagcctgagcaacaagagcaaaacaaaaacaaacaaacaaacaaaaaaaaCCCACCCAAATCCTTTTTTTTAATGTAGTAGGGTTTATATAGATATACTAATATAATTGCATTTGGAGAATTAGAGTATGTATGGAGCCCACACATACTGTGATATAAAGTGTATATACAGATATTTGGATATTTTCTAGTTTGCATGATGATTAAGAGAACCAGATGGGAAAATACAATCTCCAAAGTGATGTTTATCCTGGAATTACCCAATTTAGATTAGAGAGGTTGTTCAAATTTAACTAGATAACTCTAGTTTGTACTGTATAGGTGCAGTTATGACAGTAAAAAAATAGCCTCTtggctcatacctgtaatcccaccactttgggaggccaaggtgggaggattgcttgagcccaggaattcaagactagcctgggcaacataatacagggagaccccgtttctattaaaaatacaaaaatcagccagctgtggtgacacatgcctatagtcccagctacttaggaagctgagaagggaggatcacttgaggctgtagtgcactataattatgcctgtgaatagccactctactccagcctgggcaacatagcaagaccccatctctaaaaattaaaaaaaaaaTTTAAATTAGAATATCATTTCTAGCATCTTAGGTAGGTACTTATATCTGGCTTACAGAAGTCTAAGGTATTCCTTATTTTTATATCTGCTGTCCACATTTATACAGCTACATAAAAATTTTATGACAACTTCAACATGAACCTTATATTTTCGACAATGCCTTgccaaggaatctctgaagtccatagcaggtcactgtgagacctagttccctgttgtcactgacctatgtaatcaaAGACAGTAATAcagcctgggaaacatagcgagaccctgtctctatcaaaaatttaaaattacccaggcatggtgacgcacacctgtagtctaagtgtccaagttacttgtgaagctgaggtgggaggatcacttgagcccaagagtttgaagctatggtgagctatgattgttccactatactccagcattggcaacagagcaagaactcatctctaaaaagtaaaaaGCAACTCCCCAGAAAGACTGTATTTCTACAGATAAATATTGCATTGAGATGCCAAATAGAGTGTTGTTGTAAAGTCATCAGACTAGAAAGCAGACCTGGGGACAGTGTTTACCACCTAAGAGGCAGTCCTGTTTTTGAGACCCACATCTATATATAGAGATTTTTGtttgtttgtttgtttgttttgttttgttttgagatgaagtctcactctgtcacccaggctggagtgcagtggcgcaatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggtgcgcactgccacgcctgactaatttttgtatttctagtaaagatggggtttcactatgttggccaggctggtcttgaactcctcacctcaggtgatccacccatctcagcctcccaaagtgctgagattacaggcgtgagccaccacgcccggccAGAGATCCACATCTATATTTATAACACATTTATGGATGAAAATTAAACAGGTGTccgggtgcggttactcatgcctgtaatccgagcacttgtggaggccgaggcaggcggattacttgaggtcaggacttcgaaaccagcctggccaacatggtgaaatcccatctctactaaaaatacaaaattagccaggtgtggtgtcacgcacctgtagtcccagttacttgaacctgggaggcagaggttgcagtgagccgagattgcaacactgccactccagcctgggtgacagagcaagagaccctgtctcaaaaaaaaaaaaaaaaaaTTAAATGGGTAGTGACGTTAAGAGATATATATCAGCTTCTAGTAAAAGTTTTTTTTTTTAAACCTGCTAGCTACATTTACATTATGTAAAAATAAAGGGAATAATCACTGAGAATAAAGCAGTTGAGTATTTATAACAATAATATTTTATGGGGCGCTTATAATGTTTATAATATTGTAAACCACTGTGTACTCTATTCATTTAATGCTAAATGACTTGACCATTCTTGTGGGATAAGAGATCATTAAAAAAATGCTAGggccgggcaccatggctcacgcctgtaatcccaggactttaggaggccaaggcaggtggatgacttgagctcaggagtttgagaccagcctgggcaacatgatgaaaactccgtctctaccaaaaatcaaaaaaattagccaggtgtgatgttgtgtgcctgtagtcccagctacttgtgaggctgaggtgggaggatggtttgggccccggaggtagaggttgcagtgagctgagattgtgccactgtattccatcctgggcaacagagccagaccctgcctcaaaaaaaaaaaaaaaaaaaaaaaaggcctggcacagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcaaaacacttgaggtcagacgtttgagaccagcctggccaacatggtgaaaccccgtctctaccaaaaataaaaataaaaattatccaggcgtggtggcatgtgcctatagccccagctactcaggaagctaaagcacgagaattatgtgcatcctggaggtgaaggttgcagtgagccaagatcacaccactccactccagtctggacaacagagtgagaccctgtgtcaaaaaaaaaaaaaagaaagaaagaaagaaaAAATGCTTTATggcccagtgcagtggctcacacctataatcctagcactttgggaggctaaggcaggaggattgcttgaggccaagagttcaaaacaagcctgggcaacattgcaagaccccaactctacaaaaaacgaaaaattagccgggagcggtgatgtgtgcctgtagtcccagctactcaggagactgaggtgggagaatcacttgagcctgggaggttgaggctgcagtgagctgtgtttataccactgcactccagcctgctgggtaacagagcaagactccatctcaaaaagaaaagaaaaaaTGCTTTGCTACATAATGAGGCCAGGCAAAAAAAAAAAAGTCCTGTGGAAATCATATAGACAAACATTTGCAAAGCTGCTACTGCCATTGTACCAGTGTTAAACTGTGTTCTACCTTGCATCTTTTACTGATTTTTATGACAGATTTTATATTGTAACCATTCGAGAACTCTGTAAGTGCTATGGCTTCCTTAAACTACGATTTATCATATGCTCCCGGTGTTTACTTTGAGACTGAATGGCAACCAGAGAATGTAAACAACCAAGGTGCATCTGGTTATGTTTTAAAATAAAGATTAATAAAAGTTTTGGTTTTTCTCTTTCTAACCTTCTTTTTAAACTAGAAATATAATACCTATAGAAAAGTAAATGTTggccgggtgcggtggctcatgcctataatcccagcactttgggaggccgaggcaggcagatcacctgaggtcaagagttcgagaccagtctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatagtggcagacacctgtaatcccagctactgggaaggctgagccagaatggcttgaacctgggaggcagaggttgcagtgagccgagatcgccccattgcactccagcttgagcaacaagagcgaaactgtctcaaaaaaaaaaaaaaaGTATATGTTAAGTATAGAAAAATATATAAATTAAAAAATTATAGGCTTGGGggccaggcacagtggctcacacctgtaatcccagcactttgggaggccgaggtgggtgtatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctaccaaaaaaaatatataaaaattatctgggtgtggtggcatgtgcctatagtctcagcttctcagaagactgaggcgtgagaatcacttgaacgatggaagtggaggttgcagtgagctgagatcacactactgcactacagtctgggcaacagagtgagaccttgtctcaaaaaaaaaagaaagaaaaagaaaaaTGCTTTATggcccagtgcagtggctcacacctataatcctagcactttgggaggctaaggcaggaggttcgcttgaggccaagagttcaaaacaagcctgggcaacactgcaagaccccaactctacaaaaaacgaaaaattagccgggagcggtgatgtgtgcctgtagtcccagctactcaggagactgaggtggaagaatcacttgagcccgggaggttgaggctgcagtgagctgtgtttataccactgcactccagcctgctgggtaacagagcaagactccatctcaaaaagaaaagaaaaaaTGCTTTGCTACATAATGAGGCCAGGCAAAAAAAAAAAGTCCTGTGGAAATCATATAGACAAACATTTGCAAAGCTGCTACTGCCATTGTACCAGTGTTAAAATGTGTTCTACCTTGCATCTTTTACTGATTTTTATGACAGATTTTATATTGTAACCATTTGAGAACTCTGTAAGTGCTATGGCTTCCTTAAACTACGATTTATCATATGCTCCCAGTGTTTACTTTGAGACTGAATGGCAACCAGAGAATGTAAACAACCAAGGTGCATCTGGTTATGTTTTAAAATAAAGATTAATAAAAGTTTTGGTTTTTCTCTTTCTAA

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