Retrocopy Name | WTAPP1 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr6:51409028-51410750 UCSC | |
Coordinates (T2T) | chr6:51252350-51254072 UCSC | |
Coordinates (hg19) | chr6:51273826-51275548 UCSC | |
Strand | - | |
Parental Sequence | NM_152858.3 | |
Parental seq. overlap | 759 bp | |
Parental seq. overlap (%) | 29.5% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | WTAPP1, located on chr6:51409028-51410750, is a retrocopy of the parental gene WTAP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | WTAP |
Full Name | WT1 associated protein |
Also known as | Mum2 |
Coordinate | chr6:159726696-159756319 |
Strand | + |
Gene summary | The Wilms tumor suppressor gene WT1 appears to play a role in both transcriptional and posttranscriptional regulation of certain cellular genes. This gene encodes a WT1-associating protein, which is a ubiquitously expressed nuclear protein. Like WT1 protein, this protein is localized throughout the nucleoplasm as well as in speckles and partially colocalizes with splicing factors. Alternative splicing of this gene results in several transcript variants encoding three different isoforms. [provided by RefSeq, Jul 2012] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | WTAPP1 |
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Bonobo | Pan paniscus | WTAPP1 |
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Gorilla | Gorilla gorilla | WTAPP1 |
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Orangutan | Pongo abelii | WTAPP1 |
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Gibbon | Nomascus leucogenys | WTAPP1 |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>WTAPP1 |
CATCGCTCTTAACCTTGAGCATAGTGACTTAGAGACACTGTGTATCAGTTTTGCCAATAAGACTGTGGACTTCATGATTGTTGTACTTCTGGGTCAAAACTCAAATGAGGTGAATTTTGCCTTTAAAGGTTTTATTTGCTGAGAAACAACTTTTGATAGTCATGAGAGAATCAAATAATAGATGTCCGTACAAGTAGCACATATATTTAACCATTTAGTTTGGGGCTCTGTATTACTTGCTTGAGCCTTAATCAATGTGGTTTTATTCAATGGTTTGTTCTTTGAATGGCTGCAAAAACTGTAGATAAACTTACTGAGGACTGTACAGACATGAAGGTGTGGTATCAAACTTCAGGTTGAAACTGTTTGAAGCATTATAAACATTCATTTCACAACTAGATTGTATAAGGATATTAGCTGTGATGAGACTCACTGCATTTTTTTTTAGTGAATTTTATGAAATCCCCATTCCATTCAACAGGCACATGTTTGAAAGAGCATTGTCGTTGGTGTTAATGGGGGAATGTGTTCCTTCATTGTATTTGGGCCTTTTGTATTGCACTCTTGATATTAAATTAAATGTGCCTTGAAATGCCACATTCTTACACTGTCCAGCTTGTAATGTTTAATGTAAAACTTACCAGATGAACCTTGTGTTTCAGCTTTTTTCTTTTCCCCTTCCCCTTGCTTCAGACGCCTGATGGCATCGGACTATTCCGAAGAAGTGGCCACCTCCGAAAAATTCCCCTTCTAGAACATGTAGACACTTGAGAAATGTTTCTGTTTGAAGAAAATAGAGGGAGAAACAGAAGTCTTAAGTCTGTGGCACACTGTGTCTTCAGACAGTTTGAAGGGCTTGCTGAGCTCCGGCGCCCGCGGAGCTCGCACCAGGCTCCCCGGAAAGGACGGGGCGTGTTACCGGGGAGCAGCTGCTCTATTGCGCCTCGAGGCTCCGATCGGGCTAGGCCGGCGGCCTCGCTCCCTCCCTTCACCTTTCCTCTCCTGGCGGGCCCGGCGGCGGGCAAGTGACTGCCCGCCATGCCTGAAAGGCGACTCTTCGATTCAAGATGACCAGAGAAGAACCTCTTCCCAAGAAAGTTCGACTGAGTGAAACAGACTTCAAAGTTATGGCAACAGATGAGTTAATTCTAAGATGGAAACAATATGAAGCATACGTACAAGCTTTGGAGGGCAAGTATACAGATCTTAAACTCTAATGATGTAACTGGCCTAAGAGAGTCTGAAGAAAAACTAAAGCAACAACAGCAAGAGTCTGCACGCAGGGAAAACATCCTTGTAATGCGACTAGCAACCAAGGAACAAGAGATGCAAGAGTGTACTACTCAAATCCAGTACCTCAAGCAAGTCCAGCAGCCGAGCGTTGCCCAACTGAGATCAACAATGGTAGACCCAGCGATCAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTGCCTGGAAGTTTACGCCTGATAGGTAAACAAATCATCCTCCCCAGTTAAGACTTCCCTGACAGTCCCACTACGAGAAAGCTGTGGTGGGACAACCAAGTACTCGTTTCCACACCAAGACTCAGACTTTTTGAGCCa |
>NM_152858.3 |
CGCTTCCCTTACTGAGCTTGCTGAGCTCCGGGGCCCGCGGAGCTCGCGCCAGGCTCCTGGGAAAGGACGGGGAGTGTTACCGGGGAGCAGCTGCTCCATTGTGCCTCGAGGCCCCGATCGGGCTAGGCCGACGGCCTCCCTCCCTTCACCTTTCCTCTCCTGGCGGGGTTCGGCGGCGGGCGAGTGACTGCGGCCACGCCTGAAAGGCGACTCTCCTGATTCAAGATGACCAACGAAGAACCTCTTCCCAAGAAgGTTCGATTGAGTGAAACAGACTTCAAAGTTATGGCAAGAGATGAGTTAATTCTAAGATGGAAACAATATGAAGCATATGTACAAGCTTTGGAGGGCAAGTACACAGATCTTAACTCTAATGATGTAACTGGCCTAAGAGAGTCTGAAGAAAAACTAAAGCAACAACAGCAGGAGTCTGCACGCAGGGAAAACATCCTTGTAATGCGACTAGCAACCAAGGAACAAGAGATGCAAGAGTGTACTACTCAAATCCAGTACCTCAAGCAAGTCCAGCAGCCGAGCGTTGCCCAACTGAGATCAACAATGGTAGACCCAGCGATCAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTGCCTGGAAGTTTACGCCTGATAGGTAAACAAATCATACTCCCCAGTCAAGACTTCCCTGACAGTCCCACTACGAGAAAGCTGTGGTGGGACAGCCAAGTACTCGTTTCCACACCAAGACTCAGACTTTTTGAGCCAAAAAAAAGCCACATTCTTACACTGTCCAGCTTGTAATGGTTAATGTAAAACTTACCAGATGAACCTTGTGTTTCAGCTTTTTTCTTTTCCCCTTCCCCTTGCTTCAGAGGCCTGATGGCGTCGGACTATTCCGAAGAAGTGGCCACCTCCGAAAAATTCCCCTTCTAGAACATGTAGACACTTGAGAAATGTTTCTGTTTGAAGAAAATAGAGGGAGAAACAGAAGTCTTAAGTCTGTGGCACACTGTGTCTTCAGACAGTTTGAAGGAATGAAAACCTAGAGATTTTAAATCATGAATTGAACATGTAAAATTCCAGTAAAATGTAAAAACGGAATATGCATCGCTCTTAACCTTGAGCATAGTGACTTAGAGACACTGTGTATCAGTTTTGCCAATAAGACTGTGGACTTCATGATTGTTGTTGAACTTCTGGGTCAAAACTCAAATGAGGTGAATTTTGCCTTTAAAGGGTTTATTTGCTGAGAACCAACTTTCAATAGTCATGAGAGAATCAAATAATAGATGTCCGTACAAGTAGCGCATATATTTAACCATTTAGTTTGGGGCTCTATATTACTTGCTTGAGCCTTAATCAATGTGGTTTTATTCAATGGTTTGTTCTTTGAATGGTTGCAAAAACTGTAGATAATCTTACTGAGGACTGTACAAACATGAAGGTGTGGTATCAAACTTCAGGTTGAAACTGTTTGAAGCATTATAAACATTCATTTCACAACTAGATTGTATAAGGATATTAGCTGTGATGAGACTCACTGCATTATTTTTTTTAGTGAATTTTATGAAATCCCCGTTCCATTCAACAGGCACATGTTTAAAAGAGCTTTGTCGTTGGTGTTAATGGGGGAATGTGTTCCTTCATTGTATTTGGGCCTTTTGTATTGCACTCTTGATATTAAATTAAATGTGCCTTGAAA |
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