Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NUFIP1P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr6:66091474-66094945  UCSC
Coordinates (T2T) chr6:67249561-67253034  UCSC
Coordinates (hg19) chr6:66801367-66804838  UCSC
Strand -
Parental Sequence NM_012345.3
Parental seq. overlap 2637 bp
Parental seq. overlap (%) 67.5%
Genomic Region Intergenic
Retrocopy Summary NUFIP1P1, located on chr6:66091474-66094945, is a retrocopy of the parental gene NUFIP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NUFIP1
Full Name nuclear FMR1 interacting protein 1
Also known as NUFIP|Rsa1|bA540M5.1
Coordinate chr13:44939249-44989471
Strand -
Gene summary This gene encodes a nuclear RNA binding protein that contains a C2H2 zinc finger motif and a nuclear localization signal. This protein is associated with the nuclear matrix in perichromatin fibrils and, in neurons, localizes to the cytoplasm in association with endoplasmic reticulum ribosomes. This protein interacts with the fragile X mental retardation protein (FMRP), the tumor suppressor protein BRCA1, upregulates RNA polymerase II transcription, and is involved in box C/D snoRNP biogenesis. A pseudogene of this gene resides on chromosome 6q12. [provided by RefSeq, Feb 2012]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NUFIP1P1
Bonobo Pan paniscus NUFIP1P1
Gorilla Gorilla gorilla NUFIP1P1
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NUFIP1P1
TTTGATATATTCAAAGATGTGATTCCCAACCAACTCAGGATGAAGTAACTAGTGTTACAACTGAGTTGATATTCTAAAATATAACACAGTTTGTACTTTTATTACTAGTTAGCATACACATTTTATAGGCTTATGGTTAATAAATGAATTCACGGACTCCTGGACTACTTTCATTGATGACCATATCTCCAGGGATGTTGTTGATCCCCACACTGCCTTAAGGTATATTATATAAACAGTTTTATTTTCCGTTTTTCTTGTTTCCTGATAATCAATGTATTTAGGACTGAAAATACTTCTGAGTACTCCCTTGGCAGTATGTCTGACAGTCTTTAGCTATGGTGACTATTGTTTATTTTTAACGGGTATTTCAGATTCCAAGTGTATTTAAAATTTCTAAGGAGATATAATATAGCCTGTATGGTTTCTATTTTATGGAATTATATGGTCAATATTTGTAAATATTCTATGAGTTTTGGGTGGGTAGAGGGGTGCTTTGCCTGTTTTGGGTACAGGTTTTTTTGGATTTAGCTTGTTAATTGTTCAAACTTTCTGCCTTCTACATTCCTATCTTATTGTTCATTTAATCAGTTCCTGAAATGTAAGCATTACATGACTATTGTTGAGTTCTGCCTTTTATAACTGAAATACTTTACTTTTTCTCATATCCTCTATAATTGACTTCTATTTTCCTTAATCAAACCAGCTCTGGGAAATTTAATACATTTATTTTAATTGAGATTATTAAAACATTTGGACTATTCCCAGTTTTTCACTTTTTTTGTGATACCTGTGATCGTGGTTTTAAAAATCGAGAAAAGTATGACAAACACATGTCTGAACATACAAAATGCCCTGAAGTAGATTGCTCTTTTACTGCACACAAGAAGATTGTCCAGTTCCATTGGAGAAATATGCATGCTCCTGGCATGAAGAAGATCAAGTTAGACACTCCAGAGGAAATTGCACGGTGGAGGGGAGAAAGAAGGAAAAACTAGCCAACTCTGGCCAATATTGAAAGGAAGAAGAAGTTAAAACTTGAAAAGGAGAAGAGATGAGCAGTACTGACAACAACACAATATGGCAAGATGAAGGGGATGTCCAGACATTCACAAATGGCAAATATCAGAAGTCCTGGCGAGAATCAGAAATGAAAAAACAATTATAGACAGAGAGCAGTCACTGGATCAGGCAATCACTTGTGTGATTTGAAGCCAGAAGGTCCACCTGAGGCAAATGCAGATCCTCTTGGTGTTTTGATAAACAGTGATTCTGAGTCTGATAAGGAGGCACAACATTCTGTGATACCCAAGGAAGTGACACCAGCCCTATGCTCACTAATGAGTAGCTATGGCAGTCTTTCGGGGTCAGAGAGTGAGCCAGAAGAAACTCCCATCAAGACTGAAGCAGACGTTTTGGCAGAAAACCAGGTTCTTGATAGCAGTGCTTCTAAGAGTCCAAGTCAAGATGTTAAAGCAACTGTTAGAAATTTTTCAGAAGCCAAGAGTGAGAACCGAAAGAAAAGTTTTGAAAAGACAAACCCTAAGAGGAAAAAAGATTATCACAACTATCAAACGTTATTCGAACCAAGAACACACCATCTATATCTCTTGGAAATGCTTCTAGCTCCGGACATTCGACATGAAAGAAATGTGATTTTGCAGTGTGTTCGGTACATCATCAAAGAAGACTTTTTTGGACTGGATACTAATTCTGCGAAAAGTAAAGATGTATAGGCGTCTGGTGTTTCAGCATACATAACTGAAGCATGTGAAACAGTATCATCCTCATTAGTAGAGGAAAACCAAAACCCTTTTTTCCCTCAAAACTGGATTTGTAATTAAATTGTAAGCCTCGTAGGATGTATGTTGGAATTTTAAGTCTTTCCTTTGGTTCTATGCAAATAAATACATAACTGATTTTTTAAGACTGTGTCTGTATTGTTGGGATTGAATCTAGTATTTGCTGGGAGAATTTTTTCTTTGTATTTATTTTAATGTATTGTTCTCATGTAAAAATGACTGATGTTGTGTCAGTTAAGAATTGAAGATAGGTTTAGCAGTAAAGAAAGCTTTTAAAAGGATTGATTCAGCTAAGCAAAGTTGGGCAGAGAAATACAGCCATTTTGTTTTTAATGCAGAAAAGGAAGATGTTCTGTAGCAGGGGGGAATATTTTAAAAATAAACCAGATCAAATTAATACAATCAGAAGGTTTCGAAATGTAAATATTCCTTATTTAAGACATGTTTATATTCACCTACTAGCACGAGTTACATAGCTCAAATATTGAATGTTTAAAATATTAATACAGATGGGGCCTCTGTTTTATGTTTAGATATAATTGAAGTACTTAATTGAAGCTTTTTAAAAATTGTAAAGAAAATGAAAGCTACTGAGATCTTCTTGTCTCCTATAATACCAGGGAATTTGAGCTTGTGTTCTAGTCATTGTACTAGCTGTAGCTATTGGTCTGCCCTTTTGACATACAGCTAAAAGGGACTAAATTTTTAAAAAATTAGTCTGTTATAGTTGAAGATTAACTTTTCTTAACATTGTGATTATTGAAGTTCATGAATCTTGCTGTCAAGGAAGAAAGGTAAGAAAGCTGAGAGCTCCTCCATGTTGGTAAAATCCTCTCCAGAATCTTGGAACACCTGGCATGTGACCCTAGTGACGTCACAGACCTGAGATGAAGATTCATGTTTAGCCAGTGTTTTCCAGCCTTGTACCCACCATACAGATCTGTTTATTCTGTTTCACCCTACTCCTCCAGTGAGCCCCATATTTTGGGAAATTATCTGCCTCATACATTAACTAACAGTTGCGTGCTAGACTCCGGACCCGGCCGGTGGTATGGCTGAGCCGACTAGTGATTTCGCGACTCCTATCGGGTGGCCTGCATCTCCCGGGCTGACTCCCACGTTAGGGCCCCTGACCGACACTGCCCCGCCGCGGGACAGCTGGATGTTCTGGGCAATTCTGCCGCCACCGCCACCACCGCTTACGTCCTCGCTTCCCGCAGCCGGGTCAAAGCCTTCCTCTGAGTCGCAGCCCCCCATAGAGGCCCAGTCTCTCCCCAGGGCTCCGCCCCTCTTTGACGCCCAGCTTCTTCCCGGGGCGCAACCCCCCTTCCACGCACAGTCCCCCCTTGATTCTCAGCCTCAACCCAGCGGCCAGCCTTGGAATTTCCATGCTTCCACATCGTGGTATTGGAGACAGTCTTCTGATAGGTTTCCTCGGCATCAGAAGTCCTTCAACCCTTCAGTTAAAAATTCTTATTATCCACGAAAGTATGATGCAAAATTCACAGACTTCAGCTTACCTCCCAGTa
>NM_012345.3
ACAGTCGCGTGCTAGACTCCGGACCCGCCAGTGGTATGGCTGAGCCGACTAGTGATTTCGAGACTCCTATCGGGTGGCATGCGTCTCCCGAGCTGACTCCCACGTTAGGGCCCCTGAGCGACACTGCCCCGCCGCGGGACAGCTGGATGTTCTGGGCAATGCTGCCGCCACCGCCACCACCACTTACGTCCTCGCTTCCCGCAGCCGGGTCAAAGCCTTCCTCTGAGTCGCAGCCCCCCATGGAGGCCCAGTCTCTCCCCGGGGCTCCGCCCCCCTTCGACGCCCAGATTCTTCCCGGGGCGCAACCCCCCTTCGACGCCCAGTCTCCCCTTGATTCTCAGCCTCAACCCAGCGGCCAGCCTTGGAATTTCCATGCTTCCACATCGTGGTATTGGAGACAGTCTTCTGATAGGTTTCCTCGGCATCAGAAGTCCTTCAACCCTGCAGTTAAAAATTCTTATTATCCACGAAAGTATGATGCAAAATTCACAGACTTCAGCTTACCTCCCAGTAGAAAACAGAAAAAAAAGAAAAGAAAGGAACCAGTTTTTCACTTTTTTTGTGATACCTGTGATCGTGGTTTTAAAAATCAAGAAAAGTATGACAAACACATGTCTGAACATACAAAATGCCCTGAATTAGATTGCTCTTTTACTGCACACGAGAAGATTGTCCAGTTCCATTGGAGAAATATGCATGCTCCTGGCATGAAGAAGATCAAGTTAGACACTCCAGAGGAAATTGCACGGTGGAGGGAAGAAAGAAGGAAAAACTATCCAACTCTGGCCAATATTGAAAGGAAGAAGAAGTTAAAACTTGAAAAGGAGAAGAGAGGAGCAGTATTGACAACAACACAATATGGCAAGATGAAGGGGATGTCCAGACATTCACAAATGGCAAAGATCAGAAGTCCTGGCAAGAATCACAAATGGAAAAACGACAATTCTAGACAGAGAGCAGTCACTGGATCAGGCAGTCACTTGTGTGATTTGAAGCTAGAAGGTCCACCGGAGGCAAATGCAGATCCTCTTGGTGTTTTGATAAACAGTGATTCTGAGTCTGATAAGGAGGAGAAACCACAACATTCTGTGATACCCAAGGAAGTGACACCAGCCCTATGCTCACTAATGAGTAGCTATGGCAGTCTTTCAGGGTCAGAGAGTGAGCCAGAAGAAACTCCCATCAAGACTGAAGCAGACGTTTTGGCAGAAAACCAGGTTCTTGATAGCAGTGCTCCTAAGAGTCCAAGTCAAGATGTTAAAGCAACTGTTAGAAATTTTTCAGAAGCCAAGAGTGAGAACCGAAAGAAAAGCTTTGAAAAAACAAACCCTAAGAGGAAAAAAGATTATCACAACTATCAAACGTTATTCGAACCAAGAACACACCATCCATATCTCTTGGAAATGCTTCTAGCTCCGGACATTCGACATGAAAGAAATGTGATTTTGCAGTGTGTTCGGTACATCATCAAAAAAGACTTTTTTGGACTGGATACTAATTCTGCGAAAAGTAAAGATGTATAGGCATCTGGTGTTTCAGCATACATAACTGAAGCATGTGAAACAGTATCATCCTCGTTAGTAGAGGAAAACCAAAACCCTTTTTTCCGTCAAAATTGGATTTGTAATTAAATTGTAAGCCTCGTAGGATGTATGTTGGAATTTTAAGTCTTTCCTTTGGTTCTATGCAAATAAAAAAATAACTGATTTTTTAAGACTGTGTCTGTATTGTTGGGATTGAATCTAGTATTTGCTGGGAGAATTTTTTCTTTGTATTTATTTTAATGTATTGTTCTCATGTAAGAATGACTGATGTTGTGTTAGTTAAGAATTGAAGATAGGTTTAGCAGTAAAGAAGAAAGCTTTTAAAAGGATTGATTCAGCTAAGCAAAGTTGGGCAGAGAAATACAGCCATTTTGTTTTTAATGCAGAAAAGGAAGATGTTCTGTAGCAAGGGGGAATATTTTAAAAATAAACCAGATCAAATTAATACAATCAGAAGGTTTCGAAATGTAAATATTCCTTATTTAAGACATGTTTAAATTCACCTACTAGCACGACTTACATAGCTCAAATATTGAATGTTTAAAATATTAATACAGATGGGGCCTCTTTATGTTTAGATAAAATTGAAGTACTTAATTGAAGCTTTTTAAAAATTGTAAAGTAAATGAAAGCTATTGAGATCTTTTTGTCTCCTATAATACCAGGGAATTTGAGCTTGTGTTCTAGTCATTGTACTAGCTGTAGCTATTGGTCTGTCCTTTTGACATACAGCTAAAAGGGACTAAATTTGTAAAAAATTAGTTTGTTATAGTTGAAGATTAACTTTTCCTAACATTGTGATTATTGAAGTTCATGAATCTTGCTGTCAAGGAAGAAAGGTAAGAAAGCTGATAGCTCCTCCATGTTGGTAAAATCCTCTCCAGAATCTTGGAACACCTGGCATGTGACCCTAGTGACGTCACAGACCTGAGATGAAGATTCATGTTTAGCCAGTGTTTTCCAGCCTTGTACCCACCATACAGATCTGTTTATTCTGTTTCACCCTACTCCTCCAGTGAGCCCCATATTTTGGGAAATTATCTGCCTTATACATTAACTAATTCAATTCATGTAACACTGTTGAGTGCTTACTCTTTGTACCTCTATTGTGCCTATATTAAAGGTATACAAATAAATAAGGCCATGTCTGACTTCAAGGAACTCAGTTTAATTTTGATATATTCAAAGATGTGATTCCCAACCAACTCAGGATGAAGTAACTAGTGTTACAACTGAGTTGATATTCTAAAATATAACACAGTTTGTACTTTTATTACTAGTTAGCATACACATTTTATAGGCTTATGGGTTAATAAATGAATTCATGGACTCCTGGACTACTTTCATTGATGACCATATCTCCAGGGATGTTGTTGATCCCCACACTGCCTTAAGGTATATTATAGAAACAGTTTTATTTTCCATTTTTCTTGTTTCCTGATAATAAATGTATTTAGGACTGAAAATACTCCTGAGTACTCCCTTGGCTGTATGTCTGACAGTCTTTAGCTATGGTGACTATTGTTTATTTTTAATGGGTATTTCAGATTCCAAGTGTATTTAAAATTTCTAAGGAGATATAATATAGCCTGTATGGTTTCTACTTTATGGAATTATATGGTCAATATTTGTAAATATTCTATGAGTTTTGGGTGGGTAGAGGGGTGCTTTGCCTGTTTTGGGTACAGGTTTTTTTGGATTTAGCTTGTTAATTGTTCAAACTTTCTGCCTTCTACATTCCTATCTTATTGTTCGTTTAATCAGTTTCTGAAATGTAAGCATTACATGACTATTGGTGAGTTGTGCCTTTTATAACTGAAATACTTTACTTTTTCTCATATCCTCTATAATTGACTTCTATTTTCCTTAATCAAACCAGCTctgggaaatttaatacatttatattaattgagattattaaaacatttggactatt

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