Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GATCP1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr7:130644170-130645544  UCSC
Coordinates (T2T) chr7:131958492-131959866  UCSC
Coordinates (hg19) chr7:130329040-130330414  UCSC
Strand -
Parental Sequence NM_176818.3
Parental seq. overlap 874 bp
Parental seq. overlap (%) 20.3%
Genomic Region Intragenic (COPG2)
Retrocopy Summary GATCP1, located on chr7:130644170-130645544, is a retrocopy of the parental gene GATC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GATC
Full Name glutamyl-tRNA amidotransferase subunit C
Also known as 15E1.2|COXPD42
Coordinate chr12:120446444-120463749
Strand +
Gene summary Enables glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Located in mitochondrion. Part of glutamyl-tRNA(Gln) amidotransferase complex. Implicated in combined oxidative phosphorylation deficiency 42. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes GATCP1
Bonobo Pan paniscus GATCP1
Gorilla Gorilla gorilla GATCP1
Orangutan Pongo abelii GATCP1
Gibbon Nomascus leucogenys GATCP1
Green monkey Chlorocebus sabaeus GATCP1
Crab-eating macaque Macaca fascicularis GATCP1
Rhesus Macaca mulatta GATCP1
Baboon Papio anubis GATCP1
Golden snub-nosed monkey Rhinopithecus roxellana GATCP1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GATCP1
AGCATTTCTTAATAGCAGACTCTTCTGAAGACAGAATTGGGAAATATCTGGCACCAACAAGGCAATGAGTTCCTGATGCTAACTGAAGTAAAAGGAAAGCAAAAGTCAGCTTCCAAGGAAATAGCTTCCAAGGTATTCACTTAACAGGCCTGTTCAGTATGGAAGACACTATTTATCCCCCTTTAACTCTCGCCAAAGGACTATACCAACTGCATGAAAGTGAACTTTTACATCTACTTAAATGGTAGATGGAGCACCTTGATCACTATGTGACAACCTTGGTTGTCATTTTTAGTTGCTATTTGAATTGATTTGAGCAGCCCTATCTTCACCGGACATACCTGAATTTGTTCCTAGGTACCCACTTTGTTCCTAGAAAAGGGCTAACTTTCTACTATGGTCTGAAGAGTGTTCAAAGTAGACTAGAGCTTGGGAACTCCTAACCTAGAACCATCTGCCATCCCACAAAGTGATTAGATGCAAAAGGGATACTAGTCATACCTAGTGTTTCTCTTTCTGAAAAGAGAACTTATCCTAAAAGTAGCCATGGGCCTGGGACAAAGTAGCCCTTTCCACCCCCAAAATGATTATTAGATTGACGTGAGTCCAAGGCAGTGGCCGGATCATGATTGAGGTGATTGAGCCCCTGGAGCCTCTAGTGCCTGTGGATTTTGGCAGTCTCGAGGCAGTGGTCCGGTTGGAGAAAGACATCATCTTCGCCCATGGGCTCCACCCCATGGACACCGACGGGTGGAGCCCATGGAGTCGGTCCTGGAGGGCAGATGTCTATACCTGAGATCTAACAATGTAGTAGAAGGCAACTGTGCTGAAGAATTACTACAAAACTCCCATTGCGTCGTGAAGGAGTATTTTGTGGCCCCCCAGGTAATATCTCTTTGCCAAAGCTGGATGAACAAGAGCCTTTCTCACACAGCCGAGTAGCTCATTCTGGAAAGGGGGTACTCTCTGAATACGTGGAAGCATGAGGACCATATTTTCTTACTGTGAACACTAATTTTCCTGCTTTTTCCAGTCACCTGAAAAAATGGATGCTTAAGCATTTCt
>NM_176818.3
ACGCGCGGGCGCACTGCGGGGGCCAAGGAAGGAAGAAATGTGGTCGCGGTTGGTGTGGCTGGGCCTTCGGGCCCCTCTGGGCGGGCGCCAGGGCTTCACCTCCAAGGCGGATCCTCAGGGCAGTGGCCGGATCACGGCTGCGGTGATCGAGCACCTGGAGCGTCTAGCGCTTGTGGACTTCGGCAGCCGCGAGGCAGTGGCGCGACTGGAGAAAGCTATCGCCTTCGCCGACCGGCTACGCGCCGTGGACACAGACGGGGTGGAGCCCATGGAATCGGTCCTGGAGGACAGATGTCTATACCTGAGATCCGACAATGTGGTAGAAGGCAACTGTGCTGATGAATTACTACAAAACTCCCATCGCGTCGTGGAGGAGTACTTTGTGGCCCCCCCAGGTAATATCTCTTTGCCAAAGCTGGATGAACAAGAGCCATTCCCACACAGCTGAGTAGCTCATTCTGGAAAGGGGGTACTCTGTGAACATGTGGAAGCATAATGACAGTATTTTTTTACTGTGAATACTAATGTTCCTGCTTTTTTCAGTCCCCTGAAAAAATGGATGCTCAAGCATTTCTTAATAACAGATTCTTCTGAAGACAGAATTGGGAAAGATCTGGCCCCAACAAGGCAGTGAGTTCCTGATGCTAACTGAGGTGAAAGAAAAGCAAAAGTCAGCTTCCAAGGAATTCACTTAACAGGCCTGTTCAGTATGGAAGACATTATTTATCTGCCTTTAACTCCCCCCAAAGGACCATACCAACTGCATGAAAGTGAACTTTTCTATCTACGTAACTGGTAGACGGAGCATCTTGATCACTATGTGACAACCTTGGCTGTCATTTTTAGTTGCCATTTGCATTGATTTGAGCAGCCCTATCTTTACCGAACATACCTGAATTTGTTCCTGGGCTCCCACTTTCTTCCCAGAAGAGGGCTAACTTCCTACTAAGGTCTGAAGAGTGTTGAAAGTAGACTAGAGCTTGGGAACTCCTAACCTAGAACTATCTGCCATCCCACAAAGTGATTATATGCCAAAGGGATACTAGTCATACCTAGTGTTTCTCTTTCTGAAAAGAGAACTTATCCTAAAATTAGCCCTGGGCCTGGGACAAAGGAGCCCTCTCCGCCCCCAAAATGATTATTAAATTGAGATGAGTCCAGGATAAAACTCAGATACCAAGGATAAATGAAACTTATTTAGGGATAAAAGTGggctgggcgcagtggctcactcctgtaatcccagcactttgggaggctgagacgggcggatcacaaggtcaggagatcaagaccatcctggctaatgcggtgaaacctcatctctactaaaaatacaaaaaattagctgggtgtgatgacaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggagacggagcttgcagtaagccgagatcgcaccactgcactccagcctgggcgacagagcaagtctcaaaaaaaaaaaaaaaGTGATAGAATCAGAGAGTTTTTCCTCTAACCAAACTGCCAAAGTTGGTTTTGGCTAAGAATTTCCCAATAATATTTATGCTGCTGCTCAtttttttagttttctgagacaggggtctccctctgtcacccaggctggagtgcagtggtgacagatcactgcagcctccaactcctgggctcaagtgatcctcccacctcagcctcctaagtaactgggactacatatgtgcatcaccacgtccagttaatttttttttaagtagaggtgggggttttgctatgttgcctatctggtcgtgaactcctggcctcaagggatcctctggcatgccttggcctcccaaagggctaggatcacaggcaaaagccaccgtgTGTTTATTTTTCCCATTCCCTTCCTTTATCTGCAATGCTTTTTTCTTTAAGGCAGCCTAATTTACAAGCTTGGCCTTGAATTAAAAGAGAACCCAGAACCCGCTCTTGGAGTTTACGTTCTCAAACCAACATCAGAGCAACTGTCTATCCCCATATAAATAAAGTTATCTACCCCTGCTCCTAACTGGGTACAAGTTATGACTACAACTCAGTGATTTTTTAAATTAGTGTGCCTATTTGGTGAAATCTGTGAACTTAATCAAGGACAACCACACATGTCAATTACTAAACATTTAAAATATATTTCTAAACAGAATGGGCCGACTCAGTCACAGTAACTGTTGATCTCCATAGTAGAGCAACCCACAAAGACAGAACTGATTTTTTTCCCATAATCAGGGGTGAAAAATATACAACTTGTTTCTGAACCAAAACCACAATTTCTGCAGTTTAAAATGTTTCACTGCTAATATGGCCCTGGTAGAAATTATGTAGTTTTTTTTCTTCTTTAAAAAAAAAAAATTAAAAAAATTTCCTAAGACACTAAATCCTCAATCTGGAATGTAGATTCTGAGCACAAAGCAGCTCAGTTAACCTAAAAAATAAAGAAAAAATTCCCATCACCTGTCTCAGTAGGGCCTGAAAGGAGAGAAGTAGTGTGGGGAACCCCTGCTTTGGTATGGAGAGTCACGGCCCCTTGACCCAGACCGAGACCGTGAGTAGCCATAGCTGGTGCTTCTCTCAGGATAAACTCGGATGTAGGAAGTTTCACCCTGAAATGCAAACAAAAACAAAAAGAGTAAAGGGGAAAAAAATCAGAGCCAGAAGAATAAGCAAACCAACATCTAACaataatagttaagtattgagcacttactgtgtactctgtgcctggcatgaggctatctcattaaaccttcataacattatgaggtaggtactcttactatcccatttcaagaatgaagaaaattaagacttaagttatatcatttgcccaaggtaacacaataaatgccaATTTGACATGTTGATACTCAATTAACTATGATAAACAATATATCTGAATTACTGCCATTGACCCCCCTCAAAGCTAagaactggaaaggatctcaggggtcatatagtttaatcccctgccACCTCATGTATGCATCTTTGGATGGGCATCTATGGAAGgagctagcctgtatttaataccttccagatgtgaggacctgagctagatgctttagacgttatcctcttgctctagattcctggcaagtcttgtgatggtgctattatgtgaccattttgcccatgaaggaatcgaggtcccaagagtagttcaggtaaggaattaataagcagcagaggagtcatgtccaggctggcttgtccccaggccctctgccttCAGCCACCATTCTCAGAAGATCCAAAGATGCCAAGGGGAAAGAAGCCGGATGCTTTTTCACCTTAGGTGAAAGTCAGTAATTGGAGTTACCCTTTCTGAGGCCCTGCTTTGCAGTATAACTGAGGATCAGGTGCTGTTCTGTTTCTGCTTCAAATTCAAGTCCTAGAGGACAGTCTGAACAAAAGCATCATTAAACCAGGGAAGGACCAACCTCTAAGCCAAAAACTAGGCAATTATATGAATCCTCAGAAAAAGAAATGAGCCCAGAGACCTGTGTCCCCAAACATCCGTAAATCTCATAGTAAGGCAGGACAGGATAACCAGAAAAAAACAATGTCCAACTGGTCTGGTTTCTGGTCTCAATGGTACCAAAGGGATAGTCACCACCTCAATCAAACTGAGATCCAAAACAGCAGCTGCTTTCCTACAAGGAAAGACATCAAGAACTACTGAGTCTGAAGGGTGACATAATCAACCACAAGAAAATGTTACGGTTTAgcctggcacagtggtgcatgcctgcagtcccaactactggagaggctgaggtgggaggactgcttgggcccaggagttcaaggtcagcctcggcaatataatgagactgtctctaaaatcaaaaaTTAGAGAAATATAAAAATTATAAAATTAAAAAAGAAAATGTCATGATAGCTCAGGTTTCAGAGAGGATGCTGCACTACTCTGGGAAAAAAGTGAAGTGACAGCTCAGCCCTGACAGCAGGACCTAGAAGGGCTGAGATGAAGAGGCTGACCTGTAGAGCTCAGCCTGGACCCACAGGAGGGGTAGTTGAGTTCACAGAGGGATACTGCCATTTAAGCTGGTTGTGAATGGGGTGGTATGAAGACCGACTGCACTAGTATTCTCTCCAGGTTACAAATACCATGACCAAACTGTGTAATGTGATACTAATATGCAGAATAAAGCATATTAAAAAACAAA

Publications

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