Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SLC16A1P1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr7:143985120-143986538  UCSC
Coordinates (T2T) chr7:145265480-145266898  UCSC
Coordinates (hg19) chr7:143682213-143683631  UCSC
Strand +
Parental Sequence NM_001166496.2_2
Parental seq. overlap 1145 bp
Parental seq. overlap (%) 25.2%
Genomic Region Intergenic
Retrocopy Summary SLC16A1P1, located on chr7:143985120-143986538, is a retrocopy of the parental gene SLC16A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SLC16A1
Full Name solute carrier family 16 member 1
Also known as HHF7|MCT|MCT1|MCT1D
Coordinate chr1:112911847-112956196
Strand -
Gene summary The protein encoded by this gene is a proton-linked monocarboxylate transporter that catalyzes the movement of many monocarboxylates, such as lactate and pyruvate, across the plasma membrane. Mutations in this gene are associated with erythrocyte lactate transporter defect. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Oct 2009]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SLC16A1P1
Bonobo Pan paniscus SLC16A1P1
Gorilla Gorilla gorilla SLC16A1P1
Orangutan Pongo abelii SLC16A1P1
Gibbon Nomascus leucogenys SLC16A1P1
Green monkey Chlorocebus sabaeus SLC16A1P2
Crab-eating macaque Macaca fascicularis SLC16A1P1
Rhesus Macaca mulatta SLC16A1P1
Baboon Papio anubis SLC16A1P1
Golden snub-nosed monkey Rhinopithecus roxellana SLC16A1P1
Marmoset Callithrix jacchus SLC16A1P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SLC16A1P1
CTGGAATTTTTCTACACTTAAAATGCCACCAGCAGTTGGAAGTTCAGTTGGATACACCCCTTCAGACAGATGTTGGGGGTGGGCAGTCGTAGTGGAAGCTTTCATTTCCATCAACTTCTCTTAGCATTTCTCAAATATATTACTGTCTTCTTCAAAGAGATGGAAGGTATACTCCATGCCACCACCAGCAAAGTGTCACAGATATGCTCCATCATGCTGCCTGTCATGTATGGTGGAGGTCTCATCAGCAGTATCCTGGTGAATAATTTGGCAGTTGTTCAGTCATGATTGTTGGTGTTGCTTGTCAGGCTGTAGCTTGATTGTGGCTTCTTTCTGTAGCATTATACAGGAACTTTACTTGTGTATAGGAATCATTGGAGGTCTTGGGCTTTCCTTTAACTTGAACCTAGCTCTGACCATGATTGGCAAGCATTTCTATAGGAAGTGACCATTGGCCAACAGACTGGCCATGGCAGGCAGCCTCTCTATGCTGGCCTCCTCAGTAAGGCTTTCTTTGGTATCTACGGATGGAGAGGAAGCTTCCTAATTCTTGGGGGCTTCCCTGCTAAACTGCTGCGTAGCTGGAGACCCGATGTGACCAATAAGGTCCAAGCCAACAAAGGCAGGGAAAGAGGTCTAAAGAATTCCTTCAGGAAGCTGAAAAATCAGATGCAAAAAAGGTGCAGGTGATACAATACAGATCTTATTGGAGGACACCCAAAAGAAGGGAAATGATTAATCTTCCAAACAATTAATACATTCTTGTACTCATCCCTGTTTACTCAGAGAGATTTTTTTTGCTGTACCTCTCTGGAAATGTGCTCACATTTTTCTGGACTCTTTACACCTTTGGCCTTTCTCAGTAATGATGGCAAGAGTCAGTATCACTCCAGGAGAAGTCTGCCTTCCTTCTTTCCCTTCTGGCTTTTGTTGACACACAGCAAGGCCTTCTATGGGACTTGCAGCCAACACAAAGCAGATAAGGCCTCAAGTTCTCAAGTTCAGTATTTCTTTGCTGCTTCCATTATCATGAACGGAATGTGCCATTTGCTAGCACCTTTATCCACCAGCTATATTGAGTTCTGTGTCTCTGTGGGATTCTTTGGATTTACCTTAGTGGCTCAGTTCCATATTGTTTGAAATACTGATGGACCTCATTGGACCCAGAGGTCCTCCAGCACTGTGGGTTTGGTTTACCATTGTGGGATGCTGCTGTGTGGGATGCTGCTGTGTCCCCCTGGGGCCACCATTTTTAGGTAATCTCAATGACTTATTGAAATTACAAATAGACATATGGGCATATGGCATAATCTTAATTATTGCAGGTGTCTAGCTCTTCATTGTTAGGTGATAGGTATCAATTATCAACTTTT
>NM_001166496.2_2
CAAAGTGGTGAGCTGCGACGTGACTGGCTAGCTGCGTGGGTACTGGAACAAGCAAACGAGGCAGCGAGCGAAGGACGGGAGCCGGACCCTGGGCCCCGTGGAACTCCAGCCTGCGCCACCACGTCACGCACACGCTCGGCGCTGCGATCCGCGCATATAACGGTTAGTTGGGTAACAGCCGGCGGCACGCGGCGCGGACCCCACGGTGCCCTCGCTGCCCTGGTGGGGTCGGAGGGGACCTCCGGGGTTGGGAGACTTTGTCTCCGGCGGAGGGAGGCGGCCCAGCAGAGGGCATCGTGGTCACAGGCAGCCGCGTGGCCTCGGACTGCAGTGCTGGTGAAGGAGACCTTGAGGCGCTGGGGTCAGCGCCTCTCTTAGCCGAGCCGCGGGCCCCGTGCTAAGATGCCGGTCCCAGGCCTGGCCGAGGAGTTGGGTCGTGGTGCCCGGTGACGGTGGGGAAGTCCCTTCCCCCCTAAGTCTTCAATAGGCTCCTCGAGAGATGCTTTGATCTGGAAAAGGGATAACATGAGGCTGCTGCATGTGGTACCTCCAGACTCTCCTGGCCGCTTCTGCCCCAAGGGAAGGGACTCGGGGCAGAAGTTATTTATGATTCGTGACATTGTCCGCCCCAACCTTCTTGGCCCGCCGATCCTTGCCCCACCTGGTGACTTGCGAGAGTGGTGCGGAGAGCCGCATTCCCCACAGCCAAGGCGTGACTGCAGGGTTCGAGTAGACTTTGCGGAGGGGACGGGGCAGCCCGCAGACTCCTGGGAGTGGTGCTGACGGGGGCTCTTTGTCATTCAACCTGTGGCTGCCAGCGTCCGCCGCAGCGCCCTTCTACTCATGGACTTAAGGCGGCCCTGTTGAGAGAAATCTGGAGGATAGCGTTACACTTGGTCCGATGCAAGTTTTTTGTTCCAAATATTTGGATTTGACCTGCATTTTGGAATTTATCTACACTTAAAATGCCACCAGCAGTTGGAGGTCCAGTTGGATACACCCCCCCAGATGGAGGCTGGGGCTGGGCAGTGGTAATTGGAGCTTTCATTTCCATCGGCTTCTCTTATGCATTTCCCAAATCAATTACTGTCTTCTTCAAAGAGATTGAAGGTATATTCCATGCCACCACCAGCGAAGTGTCATGGATATCCTCCATAATGTTGGCTGTCATGTATGGTGGAGGTCCTATCAGCAGTATCCTGGTGAATAAATATGGAAGTCGTATAGTCATGATTGTTGGTGGCTGCTTGTCAGGCTGTGGCTTGATTGCAGCTTCTTTCTGTAACACCGTACAGCAACTATACGTCTGTATTGGAGTCATTGGAGGTCTTGGGCTTGCCTTCAACTTGAATCCAGCTCTGACCATGATTGGCAAGTATTTCTACAAGAGGCGACCATTGGCCAACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTGTACTCTGGCCCCCCTCAATCAGGTTTTCTTCGGTATCTTTGGATGGAGAGGAAGCTTTCTAATTCTTGGGGGCTTGCTACTAAACTGCTGTGTTGCTGGAGCCCTCATGCGACCAATCGGGCCCAAGCCAACCAAGGCAGGGAAAGATAAGTCTAAAGCATCCCTTGAGAAAGCTGGAAAATCTGGTGTGAAAAAAGATCTGCATGATGCAAATACAGATCTTATTGGAAGACACCCTAAACAAGAGAAACGATCAGTCTTCCAAACAATTAATCAGTTCCTGGACTTAACCCTATTCACCCACAGAGGCTTTTTGCTATACCTCTCTGGAAATGTGATCATGTTTTTTGGACTCTTTGCACCTTTGGTGTTTCTTAGTAGTTATGGGAAGAGTCAGCATTATTCTAGTGAGAAGTCTGCCTTCCTTCTTTCCATTCTGGCTTTTGTTGACATGGTAGCCCGACCATCTATGGGACTTGTAGCCAACACAAAGCCAATAAGACCTCGAATTCAGTATTTCTTTGCGGCTTCCGTTGTTGCAAATGGAGTGTGTCATATGCTAGCACCTTTATCCACTACCTATGTTGGATTCTGTGTCTATGCGGGATTCTTTGGATTTGCCTTCGGGTGGCTCAGCTCCGTATTGTTTGAAACATTGATGGACCTTGTTGGACCCCAGAGGTTCTCCAGCGCTGTGGGATTGGTGACCATTGTGGAATGCTGTCCTGTCCTCCTGGGGCCACCACTTTTAGGTCGGCTCAATGACATGTATGGAGACTACAAATACACATACTGGGCATGTGGCGTCGTCCTAATTATTTCAGGTATCTATCTCTTCATTGGCATGGGCATCAATTATCGACTTTTGGCAAAAGAACAGAAAGCAAACGAGCAGAAAAAGGAAAGTAAAGAGGAAGAGACCAGTATAGATGTTGCTGGGAAGCCAAATGAAGTTACCAAAGCAGCAGAATCTCCGGACCAGAAAGACACAGATGGAGGGCCCAAGGAGGAGGAAAGTCCAGTCTGAATCCATGGGGCTGAAGGGTAAATTGAGCAGTTCATGACCCAGGATATCTGAAAATATTCTACTGGCCTGTAATCTACCAGTGGTGCTCAATGCAAATAGTAGACATTTGTGTGGAAATCATACCAGTTGTTCATTGATGGGATTTTTGTTTGACTCCTTACCAATAGCCTGAATTTGAGGAGGGAATGATTGGTAGCAAAGGATGGGGGAAAGAAGTAGGTTCTGTTTTGTTTTGTTTTAATCTTAGCTTTTAATAGTGTCATAAAGATTATAATATGTGCCTTAAGTTTTAGTCTTTAGAACTCTAGAGAGCCTTAACTTCTTAAACCATTTTTGCTGAATTCATCTATTTCGAGTGTTGTGTTAAAAGGAAAAATAACAACTAACTTGTTTGAGGCAAATCTAAAATTTAAAATTAATCTTGCTTCATTGTTACATGTAATATATTTCAGACATTTTCACTGGAAGATTTATGAACAGAAATATTGGTTGAAAGTTAGAGATTTTACAAAATGCTGACAAAAATATTTTCCTAGCATCAGTAGATTTCTGGCATATGTTTCTGCTAGCTATATATTTAGGAAATTCAAAGCATAAAACTTTGGCAACATCTTGGCTGTTCTAGACACAGTGTACTTGTCAACCCCTCTCAGGTACCTTTTCTTGGGATGCTTATTAGAAGCCAAGTAAAGTGCTTAAGGTTTGTTTTCATTAAATTAGCTATTTCTGCTCCCCTGTTCAAAGATGCATTTTGAGTGTTTATAGATCACTGCCCTTTTTGAAATCACCTGGTATTATTTTTCTTACTGGAAAAGTTAGTATTAAAATCTACAGAACTACATATTTGTGCCTCCTTGGTAAATACAACACATCTAATTAAATGTAGACAGATATTTCAAACATCAGCTGAATTCACTTAAGTTTTTCCAAAACCTCAGTTAAACTGTGAAGCTATTGGAATTTTTTTTTCCTGGAATTTTTCCCCTTTGATTCACAGTGGTCCCATTTATATCTGCTTCTAGCTTAGTGCTATGTGTGAGATATGTGtgtgtttggtgtttttgtttttttgtttttttttttttAAGGTTTGCAAATTAAAAAGGGCCAGAAAAATTTGGCACCAGGCAAACGAATAAAGATAGGATTGGGAAAGAAGTTGCTAAGTGTGCTTAGTTTTAATAAGTAATTCCTTCTCTTTTTTCAGAGAAGGCCTTACAGAAAATTGTTGTGCTTAGAATTGCTGGATGCATTTTTACCCTCCACACAAACCTAAAAATTTTGTGACCCCTTTCACTTACCTGAAAAGTAGAGAAATGGATTCAGTATAAGGATAAGGAGGGAAGGTGGACCAGAATGAAAACTGTAAATATTTTTTTAACCTAATATCACTTAAATCGAGGCAGAAAGATACAGACATTCAATGAATTATATTCAATGCATTTAAAATACCACTGTAATTGACAGAGTAAAAGTATAGATACAAAACCTTGTGTAAGAGGCTGACTTTTCCAAATAAACATTTTTTAAGAAAACATTTCTTCTCCCAAATGTCTATTTTCTTGAGGAAAATATTGCTGTGTCTTCATTTTCATTACCAGGTTTCATTTTGGGCCTTGCTAAATTGATTGAATTAAATCCTCCAGCTTTTGAACCTTGATATTTGTGTATATGATTTATTTTCATTTGAATTTCTCCTTTCCTCTTCTTTGCTGTAAGGCAAGGAGGAGGGGAATTTTAAAACCATCTTATTTGAACTGAGAGCATCCAGAGCAGTTAACCTTAAGGAAACAATGAAAAACTCCCTTTGTATGCCTGGGCATCATGGCAGATAGAGGAAGAGTGTTAGAGGAGAAAACTGCTGCTGAGAGTATTGGCAGGCTTGGCCTCAGTTTGGACTCTGTAATTTTCTTTGGACCCAAGTCTGTAACCTCTGCGTACTTCTTCTCTCTTACCTTCTATAAAAATGAGGATTACTGTTGGTGAGGGAATAAGGAATGTAAGTAAAGGAAATCTGAAAAAATAAAAGTAAAGCAAGTATAAA

Publications

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