Retrocopy Name | PAICSP8 |
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Species | Homo sapiens | |
Coordinates (hg38) | chr7:147704151-147704573 UCSC | |
Coordinates (T2T) | chr7:148884313-148884735 UCSC | |
Coordinates (hg19) | chr7:147401243-147401665 UCSC | |
Strand | - | |
Parental Sequence | NM_001079525.2 | |
Parental seq. overlap | 363 bp | |
Parental seq. overlap (%) | 5.7% | |
Genomic Region |
Intragenic (CNTNAP2) |
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Retrocopy Summary | PAICSP8, located on chr7:147704151-147704573, is a retrocopy of the parental gene PAICS. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | PAICS |
Full Name | phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase |
Also known as | ADE2|ADE2H1|AIRC|PAICSD|PAIS |
Coordinate | chr4:56435752-56464578 |
Strand | + |
Gene summary | This gene encodes a bifunctional enzyme containing phosphoribosylaminoimidazole carboxylase activity in its N-terminal region and phosphoribosylaminoimidazole succinocarboxamide synthetase in its C-terminal region. It catalyzes steps 6 and 7 of purine biosynthesis. The gene is closely linked and divergently transcribed with a locus that encodes an enzyme in the same pathway, and transcription of the two genes is coordinately regulated. The human genome contains several pseudogenes of this gene. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | PAICSP3 |
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Bonobo | Pan paniscus | PAICSP3 |
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Gorilla | Gorilla gorilla | PAICSP3 |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>PAICSP8 |
ATGGTTTGGGACCAGTGACATCTGGAAATGCTGCATCTCCAGCTATCAGCTGTCCTCCCCTCACACTAGACTGGGGAGCTCAGGATGGGTGGTCTTCTCTTCCACTACCCAGTGGCTTTGGCTGTCCAACCACCCTTTCTTCAGAAGGAATTGCTTGGTTTGCTGGTCAGATATTTGGATTAAACAGCCATTTGGTATGGGGCAAACTGATAGCAAGTATTTTGCACACATGGATTTTCTTGAAGCAGGCTGACAAGAAAATCAGAGAATATAATTTATAAGAAAGAACTTTATTGTATTTTTTTAGGGAGAAAACGACAAATTTCCGATTTAGCTGCATGAAAATCAAGCGAGATGAAAAGATGACATTAAGTTAGAGAACACAAAGAAAATGTATTAGCGAATAAATGTTTCTCTAGAG |
>NM_001079525.2 |
AGAGTTCTGCCTCGCTTCCCGGCGCGGTCGCAGCCCTCAGCCCACTTAGGATAATGGCGACAGCTGAGGTACTGAACATTGGTAAAAAATTATATGAGGGTAAAACAAAAGAAGTCTACGAATTGTTAGACAGTCCAGGAAAAGTCCTCCTGCAGTCCAAGGACCAGATTACAGCAGGAAATGCAGCTAGAAAAAACCACCTGGAAGGAAAAGCTGCAATCTCAAATAAAATCACCAGTTGTATTTTTCAGTTATTACAGGAAGCAGttacctcatataagtcaaatcGTATTAAAACTGCCTTCACCAGAAAATGTGGGGAGACAGCTTTCATTGCACCGCAGTGTGAAATGATTCCAATTGAATGGGTTTGCAGAAGAATAGCAACTGGTTCTTTTCTCAAAAGAAATCCTGGTGTCAAGGAAGGATATAAGTTTTACCCACCTAAAGTGGAGTTGTTTTTCAAGGATGATGCCAATAATGACCCACAGTGGTCTGAGGAACAGCTGATTGCTGCAAAATTTTGCTTTGCTGGACTTCTTATAGGCCAGACTGAAGTGGATATCATGAGTCATGCTACACAGGCTATATTTGAAATACTGGAGAAATCCTGGTTGCCCCAGAATTGTACACTGGTTGATATGAAGATTGAATTTGGTGTTGATGTAACCACCAAAGAAATTGTTCTTGCTGATGTTATTGACAATGATTCCTGGAGACTCTGGCCATCAGGAGATCGAAGCCAACAGAAAGACAAACAGTCTTATCGGGACCTCAAAGAAGTAACTCCTGAAGGGCTCCAAATGGTAAAGAAAAACTTTGAGTGGGTTGCAGAGAGAGTAGAGTTGCTTTTGAAATCAGAAAGTCAGTGCAGGGTTGTAGTGTTGATGGGCTCTACTTCTGATCTTGGTCACTGTGAAAAAATCAAGAAGGCCTGTGGAAATTTTGGCATTCCATGTGAACTTCGAGTAACATCTGCGCATAAAGGACCAGATGAAACTCTGAGGATTAAAGCTGAGTATGAAGGGGATGGCATTCCTACTGTATTTGTGGCAGTGGCAGGCAGAAGTAATGGTTTGGGACCAGTGATGTCTGGGAACACTGCATATCCAGTTATCAGCTGTCCTCCCCTCACACCAGACTGGGGAGTTCAGGATGTGTGGTCTTCTCTTCGACTACCCAGTGGTCTTGGCTGTTCAACCGTACTTTCTCCAGAAGGATCAGCTCAATTTGCTGCTCAGATATTTGGGTTAAGCAACCATTTGGTATGGAGCAAACTGCGAGCAAGCATTTTGAACACATGGATTTCCTTGAAGCAGGCTGACAAGAAAATCAGAGAATGTAATTTATAAGAAAGAATGCCATTGAATTTTTTAGGGGAAAAACTACAAATTTCTAATTTAGCTGAAGGAAAATCAAGCAAGATGAAAAGGTAATTTTAAATTAGAGAACACAAATAAAATGTATTAGTGAATAAATGCTTCTCTAGATCCATATTAATAAACATGAGCATCTAACCCCTCCTTTCTTAGGCTAGACACCAAGATATTTCAGCCAGCCTTTATCATTCCTCTTACTTTATCCTTTTTCCTTAAGTATTGGTGGTCACTACTATTGAGTTTCTTCCTTAACACTGATTAAATGATCTTAACTCCCTCAGCTAAAACTGGCATTACtgactcccagctatatttctccagacttgcatttttttttttttttttgagacagggtctcactgtcgcccaggctggagtgcagtggcgtgatctcagttcactgctgctttccctcctgggctcaagcagttctcccacctcagcctctcgactaacagggactataatcttgcagcaccatgccgagctaattttattttttgtagagatgagctctcactatgtcacccaggttcgtctcaaactcctgaaccctagtaattctcctatctcagcctcccaaagtgctagggttacagacatgagccactgtgcctgtctagacttgtactttcaactgtccatttctccctgtctgtcccatgggcactcatgaaaaaacagaatgctcccaactttattcatcttccaagcctgtagctcttggtatactcactgttgcaagtcagaagcttgatttcatcattgatgtttttctcacgtttcacatctcactcatcaccaagtcatgttggtgttaatttctgattaacccttgaatttaccgtcttctcatcctctgtacAAAAGCCTCAAGTGAGGGTCAAATTCAACATTATCCTGATCTAGACAGCCCCCATTCTCAATCCACCCTTTTCCAAGTTGATTGCCCAAGGACTTCTAACAATAAACTctcttttgcaccacagacttctttgaaaatatacatgctgttgaccctctctgtagaaaaccgcacacataaaacttaccaacagatttcattggttcttgggttctcccgaagcctatccatggtttatagattaagaaTTGATGAGGTAgctgggcacagtggctcacacctacgatcacagcacttcgggaggctgaagcaagcagatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaagtagccagccgtgatgacaggcacctgtaatcccagctactcgggaggctgaggcatgagaattgcttgaacccgggaggcggaggttgcagtgagcctagatcatgccactgcactccaacctgggcagcagagcaagactctgtctcaaaaggggaaaaaaaaaaTTGCTGATGTGACCCATGAAGGGAACTCATTTTCCTCGTAATTTTGGACTGCCACACATTGGTACCTTTAGTTCTCTGAAGGCCCACGTTTTTATCATTAAGACCTATTTGTTAGCTAGTAGAGCTTTATGTTCGCTGTCCATGAAACCTTCTGTAACCACAGTGACTACAAGTAGTTCTTTCTCTATTGAATTATTAGGTCCAGAATAGAAGATGTCATTGTACACTTTATTTCCCTCACACTGTGTTATGCTCTGATGTGCTATGCTTAGCTATCTGTCAGAGATTAGTAAATTATAAAACTCATGTGTACTACTTAAGTTTATATCTTATGCTAGTTTATAAGAACAATTAAAAGGACTTAGAAGATTAACTTTGGTTTCATGGTCTCTGAAGTCACTGACTGCTATTTCAGCTTGTTTACCCTTACCTAGCATTAAGACTCCATCTACTTCTGTGCAGTATATGAAAATTTTTAAACTTTCATTTAGACTGGTGGATAGGACTGACCATTACAAATTGTCGTTATCAAttttttttcctttttttttttaagagccaagttctcactgtctcccaggctggagtgcagtggcatgattatggctccctgcagccttgaactcctggactcaagctgcagcctctcgagtagctgggtgcatgtgctaccacacccaattaTGAATTTCATCATTAGTTTCTTAGTAGAGTCCACATGTCCTCAGTAGTAAGTTCATCAGTGCTAAATATTTGAAGGTATTTCTACTGTTTTGTAAAAGTAACTTAAGCCTACCTGGTCTGCTATCTTTTGAGTATTTATACTTTCTACGGGCTTGTAGGTAAACATAAAAAGAGAAAAAATATCCCAATAATACAGTTTTTAACCTTTTATGATAAAGACATGCTTAGAATTGCTGTTAAGCTTTCTGAGATTTAACCACTGAAACTAAGTAAAAGACAAAGCACTTAGGTAAAGCttcattcagtatccattcacccaatactggtttgattctagggcctaggaaaataggactgagcaaagcccttgtccagatggaacttatgttttagaggggaaaacaaaccataaaaaggtaaacagtataaaatcaggaaaggataaatgtatatgaagaatcaaaatgaggacggtgatggggataagaggggaaggtttttgaggagagcagagcaatgatgtaaaagcaagacacacagatagggaaatagctttccatactaagggaatgggaaataaagctgagttttgccttgaggacctccaaacatgagaattgctagagctctgtgaacaaggatgagagtggaagacaatataagcaaaggctacatcacttagggcctataggccacactgaagtgtgacaggaaaaactcagtttgagcagaggcttgacatacttaacatatttaaaggttctctggctgttgtgtggacaagaggagaagcagagattagttaagaggctattgtagcccaggtgagggatgatgtatgatcttcaacatgtctaatttttttgtgcctcaatttcatgaaatgaaaatgcgactaataccacctcataaagttgtgagaattacatgagtcaatatatgtaaggcccatcatggcacacaAATGTGTTATGTAATATCCATTTGGCAGACTGAAGAACAACAGTATGAATGGAATTCATTCACCATGAGAATTACCTGGAATTCTctgggcatggtagctcatgcctgtaatcccagcactttgggtggccgaggcaggtggatcacctgagatcaggagttcgagaccagcctgaccaacatggagaaacccagtctctaataaaaatacaaaactagccgggcatggtggcacattcctgtaatcccagcgactcaggaggctgaggcaggagaatcgcttgaacctgggaagcggaggttgtggtgagccgaggttgcgccattgtactccagcctgggcaacaagagcaaaactctgtttcaaaaaaaaagaaagaaagaaaaTTACCTGGAATTCAATATTGCCATCGGCTGATTTAATTTCTAATATGAAGAAAGGGGCAGTGTGATGTGCCACGGAGCATCCACAACCTGCCATTTCAGCCCAGCCAACCTTAGAAAGCCATTGAAAAGAGTTGTTTTTAATGGTGTTTTTACATCCAGCTTCCCACACCTCAAATACTTGGGGTGGAATTGTTAATCTCACATTGCAGTACAATGAAAATAGTGGAATGGAAATCAAGTTATAAAATGGAGCTAAATATTTCTTCTGCTTGCCTCTGAGTTGATAAGATACCATAAGATACTGTACATGAGGCTGGGCGCGGTGGCTCACGTCTTATTTCTTCTGCTTGCCTCTGAGTTGACAAGATACCATAAGATACTGTACATGAggctgggtgcagtggctcacgcctgtaatcccagcactttgggagggtgaggtgggcagatcacctgaggtcgggagttcaagaccagcctgactgacatggagaaaccccctctttactaaaaatacaaaattagccaggcatggtggtgcatgcctataattccaactactcgggaggctgaggcaggagaatcgcttgaacctggaaggcagaggttgtggtgagctgagatcgaaccattgcactccagcctgggcaacaagagcgaaaatctgtcgccaaaaaaaaaaaaaaaaaGATACTGTACATGGAAGCTTCTCAGGCTAAATCCATTAATATAAAAATACATTGTGGATACTGAtgagatggctaattctgtcaacttgactaggctacgggatgccttgatagctggtcaaacaacatttctaggtacatctgtgatggtgtttctggaagagactagcacttgaatcagtagacttgagtaaagaagactgccttcacccatgtgggtgagcgtcatctaatccattgagggcctgaatagaacaaaaaaggggaagaagggtgaactgctgggacatccatttcgtgcccccagatgttggtgctcctggtcctcaggccttcagactaggacttaacgttattgcctcccctgattctcaagccctcgggtttggaactacactggctttcctgggccttcagcctgcagaaggcagactgtgggacttcacctccattttgcagagccaatttctcataatctgtacatatcctattggttctgtattttttagagaacAAATACAgcctattatgtatatataagaccctgggaatgcaaagatgaacaaaattaaccttctgctctcaatgaatcttggaagtctccagaggcagacaatttcaaaacaccgtatatagtcttaatatggaattaacaatagggtattgtgaatacacaaaagtaggAAGGACTCTGATCTCTAGAAAACAATTGTATACTGTGAATGAAAAAGACTAATTCTCCACAGTCTATActcaatctctcttacctttccataattttcttcagcaaacttattaccaccaaacatagtacatgtttatttattacccatctctcccaactagaaaataaatgtattacactgg 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