Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name NMD3P2
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr7:56501165-56503037  UCSC
Coordinates (T2T) chr7:56733544-56735418  UCSC
Coordinates (hg19) chr7:56568858-56570730  UCSC
Strand -
Parental Sequence NM_015938.5
Parental seq. overlap 1157 bp
Parental seq. overlap (%) 32.8%
Genomic Region Intergenic
Retrocopy Summary NMD3P2, located on chr7:56501165-56503037, is a retrocopy of the parental gene NMD3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NMD3
Full Name NMD3 ribosome export adaptor
Also known as CGI-07
Coordinate chr3:161221292-161253532
Strand +
Gene summary Ribosomal 40S and 60S subunits associate in the nucleolus and are exported to the cytoplasm. The protein encoded by this gene is involved in the passage of the 60S subunit through the nuclear pore complex and into the cytoplasm. Several transcript variants exist for this gene, but the full-length natures of only two have been described to date. [provided by RefSeq, Feb 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NMD3P1
Bonobo Pan paniscus NMD3P1
Gorilla Gorilla gorilla NMD3P1
Orangutan Pongo abelii NMD3P1
Crab-eating macaque Macaca fascicularis NMD3P1
Rhesus Macaca mulatta NMD3P1
Baboon Papio anubis NMD3P1
Golden snub-nosed monkey Rhinopithecus roxellana NMD3P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NMD3P2
CCTCCAGATTTCAAGAGGAGAAATTAAGTTTTAAACCTGAATAAACACGATTGTTTTGATTGCTCACTCAAAGCACTGAAAAACATGGAGGGCTTTGAAGTTTTAGATAATAAACGATTGTGGAGAATGTAATTATTATTGTTATTTAGGCTATTTTACATGTGAAATTTTATCACTGTGCTTTTTTATATGAGGCACTATAGTATTTTCACATGGTATAGTACCCTGGATGTAAAAGCTAAAAAATTGTGATTCCTTGGACATTCACTAAATCTTCAAGCAAAAACATTTTTACATTCTTTTTACATTGATTACTTTAGTGAAAGACAATATGAAAAATCATTTTTAATATTGTTAATATTGTTACATACTTTGGTCCACTTTACATCATTTTTATGTTCTTGAGGTAGGGAAATTAGGGTTCAGTTTATCACTGGATATTCGGGAGGCAAGTCAATCTTTTTTATTTCCTTATAAAATTAACATCTTCAAAAGCTGTTAAACAGAGGGTTGTCTTTTAATTTTTATTGCAGTAGAAGGAAATATATTTAAAATATTTATAGATTTGTAGCAAATAGAGACTCATTATTTAAAGATTAAATAACAATTTTTTCTTTTGTTATTTTTGCCAATTTAAGGCAGTAGCTGCATATGTCATATAAATGTCTTCCTACTACGTCAAAAATGTTGCTTTTAAAATGTTTGTTTATAAATTGAGAAGGAAGGAATTTTCTCTCTGTAAGTTTCTATCATTGAACACGCCACCATCAAAAAGAACATTAGAATCCAGCATGAAGATAATGACTAGTAAAAATGAGGTACATACATTATAAAACCATTAATCAGATTTGAATGAGGAATGCTTTCCACATCCTTGAAAGAAAAACTGTGGCTTAGGTTTTAAAGTGTTCTGAGAATGAAGTATTAAGATCTTATTTCTATAGGCAAGATCAGACTTACTAAGTATGCCACAACTAACAGCTGATTCATTCATTCTATGTGTGCCACTAAATAAAGAGATTGAGCAAGTATTGTTCCAATATGCAAGGATAAAGTTGTCTGTCTCCAAAACTGGTACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATCTGAGTAACCAGTGCCATTCACCTCACTGATCCAAACATCCTACAAGTTGCAGATATTGATGGGAGTACTTTCTGGAGTCACCCTTTCAATAGTTTATGTCACCCCAAACAGCTAGAGGAGTTTATTGTGATGGAACGCAGCATAGTCCGAGATATAAAATGTGGTGCAGATGCTGGAATGATGTAAAAAAGCATACCCTCAGGGAAGTCTGGGTACAGAAGACATCTGAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCTGGAGAGCTGGTGTTAGGGTTTGATTTGGCCAGCTGTAATTTAAATGATGAGCATGTCAATAAAATGAACTCAGATAGAGTTCCAGATGTGGTATGAATCAAGAAGGACTAAGACTGGACCAAACATCAGTGATGTAGAAACTGGAAATTGAAGGAGCTTGCGAGAGAGAGAACATGGATACAGATGATGAAAGGTAATACCAAGATTTTCTTGAAGATCTTGAAAAAGATGAGGCAATTAGAAAAAATGTCAACATTTACAGAGAGTCAACCATCCCTGTGGAAAGCGATGATGATGAAGAGCACCTCGAATTAGTCTGGCTGAGATGCCTGAAGACCTTCATATTTCCCATGATGCCACTGGTGAAGAAGGTGCATCAATGACGATATAATg
>NM_015938.5
CTCTGTGGCGGAGACAGCCAGGTTGGCAGCTGACGGGACAGCCGGGGTCTATTTTGTTGCGGGTTTTCAGCAAATCCAGGGCTGGTCTGGAGGCGCGAAAACTTAAGGCATACAGAACGATGGAGTATATGGCAGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGATAAGTCCAAATCCTGCCAATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCCGAAACAAGTCTCGATTTCGTTCTGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTGCTTTAGAATCCAGGGAACTTCTTGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTACGGCTTGTAGATGCAGGCTTTGTTTGGACTGAGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCAGAAAGAGGTGATGAATGGTGCTATCCTTCAACAAGTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATGTGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTTCTGGAAGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTCTGAAATATGGAATGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAACAACATGCTCAGAAGATGGTCGAATTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACTGATCTCTCAAGATATCCATAGTAACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCAAGGATAATGTTGTCTGTCTGTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGAGTAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTGGAGTCACCCTTTCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCCAAGATATAAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAGACATCTGAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCCGGAGACCTGGTGTTAGGGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAGAGTTCCAGATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAATTGAAAGAGCTTGCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGAAGATGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGAAAGTGACACCGATGATGAAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCCCAAGATGCCACTGGTGAAGAAGGTGCATCAATGCTGACATAATgagatgttgtagactgtttccatacatgggcttaagaagttggacagagttaccttaagtgtctctactatctttgCCTCCAGATTTCAAGAGGAGAAATTTAGTTTTAAACCTGAATAAACATGTTTGTTTTCAGTGCTCACTCAAACCACTAAAACAGATGGATAGCTTTGAGGTTTTAGATAAGGAAAGATTATGGAGAATGTAGTTGTTATTGATTTTTGGCAATTTTACATTTGGAATTTTATCACTGTGCTTTTTTATATGAGGCACTGTAGTATTTTCACATAGTATAGTACTCTGGATGTAAAAGCTCAAAAATTGTGATTCCTTGAACGTTCACTAAATCTTCAAGCAAAAACACATTTTTACATTATTTTTACGTTGATTATTTTAGTGAAAGACCATATGAAGAAGCATTTTTAATATTAACTTGTTACATACTTTGATCCACTTTACATCATTTTTATGTTGTTGAGGTAGGGAAATTAGGGTTCAGTTTATCACTGGACATTCAGGAGGCAAGTCAATCTTTTTTATTTCCTTATAAAATTAACTCTTCAAAAGCCGTTAAACAGAGAGTTATCTTAATTTTTATTGCAGTAGGAGGAAATATATTTAAAATATTTGTAGATTTATAGCAAATAGAGACTCGTTATTTAAAGGTTAAATAACAATTTGTTCTTTTGTTGTTTTTGCCAGTTTAGGGCAGTAGCTGCTTTTGTCATAAATATCTTCCTACCACATCAAAAATGCTGCTTTTAAAATTTTTGTTTATAAATTGAGAAGGAATTTTCTCTCTATAAGTTTCTGTCATTGAACAGATCACCATTAAAAAGAATATTAGAATCCAGCATGAAGATAATGGCTAATAAAAATGAGGTACATACTTTATAAAACCATTAATCAGATTTGAATGAGGAATGCTTCCCACATCCTTGAAAGAAAAACTGTGGCTTACGTTTTGAAGTATTCTGAGAATGAAGTATTAAGATCCAATTTCTATAAGCAAGATCAGACTTGTTAAGTATGCCGCAAGTAAGAGCTAATTCATTCATTCCATGTGTGCCACTAAATAAAGAGATTGAGCAAGTGCCACTGTGTGGAACATTTTTCTTTTTTTTAATATTGGACTTTCCAATTTTGAAATTATGGATAAAGTCCTAAATTTTCTATAGTGGCTTCTTTTCTGTCTGCATATTTTGTTAAAATTGTGGATCTAAAAGCCATATCCTGTCTTTGGTGGTGGCCTGGTAGGAATGGCTTGTCCTAGTTCTTCAAAGGTAAGATTGACCAAAGCAAGTTCTCATTGGTGGTCTGTGTTTACATCTTCCGTGTCAAGATATTTTAAAGCATGAAAATAAAGCCATTCTTGCCCTTTTTCGTGTGTTTGAAA

Publications

PMID - Link Title