Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NMD3P1
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Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr7:63907857-63910540  UCSC
Coordinates (T2T) chr7:65115738-65118421  UCSC
Coordinates (hg19) chr7:63368235-63370918  UCSC
Strand -
Parental Sequence NM_015938.5
Parental seq. overlap 1501 bp
Parental seq. overlap (%) 37.4%
Genomic Region Intergenic
Retrocopy Summary NMD3P1, located on chr7:63907857-63910540, is a retrocopy of the parental gene NMD3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NMD3
Full Name NMD3 ribosome export adaptor
Also known as CGI-07
Coordinate chr3:161221292-161253532
Strand +
Gene summary Ribosomal 40S and 60S subunits associate in the nucleolus and are exported to the cytoplasm. The protein encoded by this gene is involved in the passage of the 60S subunit through the nuclear pore complex and into the cytoplasm. Several transcript variants exist for this gene, but the full-length natures of only two have been described to date. [provided by RefSeq, Feb 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NMD3P2
Bonobo Pan paniscus NMD3P2
Gorilla Gorilla gorilla NMD3P2
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>NMD3P1
CCTCCAGATTTCAAGAGGAGAAATTAAGTTTTAAACCTGAATAAACATGATTGTTTTGATTACTCACTCAAAGCACTGAAAAAGATGGATGGCTTTGAAGTTTTAGATAATAAACGATTATGGAGAATGTAATTATTATTGATATTTAGGCTATTTTACATGTGAAATTTTATCACTGTGCTTTTTTATATGAGGCACTATAGTATTTTCACATAGTATACTACCCTGGATGTAAAAGCTCAAAAATTGTGATTCCTTGGACATTCACTAAATCTTCAAGCAAAAACACATTTTTACATTCTTTTTACATTGATTAGTGAAAGACCATATGAAAAATCATTTTTAATATTGTTAATATTGTTACATACTTTGATCCACTTTACATCATTTTTATGTTCTTGAGGGAGGGAAATTAGGGCTCAGTTTATCACTGGATATTCAGGAGGCAAGTCAATCTTTTTTATTTCCTTATAAAATTAACATCTTCAAAAGCTGTTAAACAGAGGGTTATCTTAATTTTTATTGCAGTAGAGGAAATATATTTAAAATATTTGTAGATTTGTAGCAAATAGATACTCATTATTTAAAGGTTAAATAACAATTTTTTCTTTTGTTATTTTTGCCAGTTTAAGGCAGTAGCTGTGTATGTCATATAAATGTCTTCCTACCACATCAAAAATGTTGCTTTTAAAATTTTTGTTTAAAATTGAGAAGGAAGGAATTTTCTCTCTGTAAGTTTCTATCATTGAACACGCCACCATCAAAAAGAATATTAGAATCTAGCATGAAGATAATGACTAATAAAAATGAGGTACATACTTTATAAAACCATAAATCAGATTTGAATGAGGAATGCTTTCCACATCCTTGAAAGAAAAACTGTGTCTTGGGTTTTAAAGTGTTCTGAGAATGAATTATTAAGATCCTATTTCTATAAGCAAGATCAGACTTACTAAGTATGGCACAACTAAGAGCTCATTCATTCATTCTATGTGTGCCACTATGGCAGCTGACAGGACAGCCGGGGTCTATTTTGTTGCAGGTTTTCAGCAAATCCAGGGCTGGTCTGGAGGTGTGAAGCATACAGAACAATGGAGTATATGACAGAATCGACTGACCGCAGCCCTGGACTCATCCTGTGCTGTGAGTGTGGTATTGCAATAAGTCCCAATCCTGCCAATATTTGTGTGGCCTGTTTGCAAAGTAAAGTGGGCATCAGCCAAGATATTCCAAAACAAGTCTCACTTTTGTTCTACAAACAATGTCAAAGGTATTTTCAGCCACCAGGAACTTGGATACGGTGTGCTTTAGAATCCAGGGAACTTCTTGCTTTGTGTTCAAAGCCCCTCTGAGTAAGGAACGGCTTGTGAATGCAGGCTTTGTTTGGACTGAGCCCCATTCTAAGAGATTTAAAGTTAAACTGACTCCAGAAAGAGGTGATGAATGGTGCTGTCCTTCAACAAGTGTTTGTGGTGGATTATGCTGTTCAGTCCCAAATATGTGGAGATTGCCATAGAGTAGAAGCTAAGGGTTTCTGGAGGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCACAAAAAAGCTTTCTACTATCTGGAACAGTTAATTCTGAAATATGGAAGGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAACCACATGCTCAGAAGATGGTCGAATTTATTCAGTATACAGTTCCCTGTAGATACAACGCATCCCAAAGACTGATCTCTCAGGATGTCCATAGTAATACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCCAGGATTATGTTGTCTGTCTGTCTCCAAAACTGACACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGAATAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTTGCAGATATTGATGGCAGCACTTTCTGGAGTCACTCTTTCAGTAGTTTATGTCACCCCAAACAGCTAGAGGAATTTATTGTGATGAAATGCAGCATAGTCCGAAATATAAAACACGGTGCAGATGCTGGAATGATATCAAAAAAGCATACCCTCAGGGAAGTCTGGGTACAGAAGACATCTGAAATGAATACAGATAAACAGTATTTTTGTCATACTCATTTGGGACATCTTCTAAATCCTGGAGAGCTGGTGTTAGGGTTTGATTTGGCCAGCTGCAATTTAAATGATGAGCATGGCAACAAAATGAACTCAGATAGAGTTCCAGATGTGGTATTAATCAAGAAGAACTAAGACTGGACCAAACATCAGTGATGTAGAAACTGGAAACTGAAAGAGCTTGCAGGAGAGAGAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGAAGATGAGGCAATTAGAAAAAATGTCAACATTTACAGAGAGTCAACCATCCCTGTGGAAAGTGATGATGATGAAGGAGCACCTGGAATTAGTCTGGCTGAGATGCCTGAAGACTTTCATATTTCCCACGATGCCACTGGTGAAGAAGGTGCGTCAATGATGATATAATg
>NM_015938.5
CTCTGTGGCGGAGACAGCCAGGTTGGCAGCTGACGGGACAGCCGGGGTCTATTTTGTTGCGGGTTTTCAGCAAATCCAGGGCTGGTCTGGAGGCGCGAAAACTTAAGGCATACAGAACGATGGAGTATATGGCAGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGATAAGTCCAAATCCTGCCAATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCCGAAACAAGTCTCGATTTCGTTCTGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTGCTTTAGAATCCAGGGAACTTCTTGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTACGGCTTGTAGATGCAGGCTTTGTTTGGACTGAGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCAGAAAGAGGTGATGAATGGTGCTATCCTTCAACAAGTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATGTGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTTCTGGAAGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTCTGAAATATGGAATGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAACAACATGCTCAGAAGATGGTCGAATTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACTGATCTCTCAAGATATCCATAGTAACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCAAGGATAATGTTGTCTGTCTGTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGAGTAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTGGAGTCACCCTTTCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCCAAGATATAAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAGACATCTGAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCCGGAGACCTGGTGTTAGGGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAGAGTTCCAGATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAATTGAAAGAGCTTGCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGAAGATGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGAAAGTGACACCGATGATGAAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCCCAAGATGCCACTGGTGAAGAAGGTGCATCAATGCTGACATAATgagatgttgtagactgtttccatacatgggcttaagaagttggacagagttaccttaagtgtctctactatctttgCCTCCAGATTTCAAGAGGAGAAATTTAGTTTTAAACCTGAATAAACATGTTTGTTTTCAGTGCTCACTCAAACCACTAAAACAGATGGATAGCTTTGAGGTTTTAGATAAGGAAAGATTATGGAGAATGTAGTTGTTATTGATTTTTGGCAATTTTACATTTGGAATTTTATCACTGTGCTTTTTTATATGAGGCACTGTAGTATTTTCACATAGTATAGTACTCTGGATGTAAAAGCTCAAAAATTGTGATTCCTTGAACGTTCACTAAATCTTCAAGCAAAAACACATTTTTACATTATTTTTACGTTGATTATTTTAGTGAAAGACCATATGAAGAAGCATTTTTAATATTAACTTGTTACATACTTTGATCCACTTTACATCATTTTTATGTTGTTGAGGTAGGGAAATTAGGGTTCAGTTTATCACTGGACATTCAGGAGGCAAGTCAATCTTTTTTATTTCCTTATAAAATTAACTCTTCAAAAGCCGTTAAACAGAGAGTTATCTTAATTTTTATTGCAGTAGGAGGAAATATATTTAAAATATTTGTAGATTTATAGCAAATAGAGACTCGTTATTTAAAGGTTAAATAACAATTTGTTCTTTTGTTGTTTTTGCCAGTTTAGGGCAGTAGCTGCTTTTGTCATAAATATCTTCCTACCACATCAAAAATGCTGCTTTTAAAATTTTTGTTTATAAATTGAGAAGGAATTTTCTCTCTATAAGTTTCTGTCATTGAACAGATCACCATTAAAAAGAATATTAGAATCCAGCATGAAGATAATGGCTAATAAAAATGAGGTACATACTTTATAAAACCATTAATCAGATTTGAATGAGGAATGCTTCCCACATCCTTGAAAGAAAAACTGTGGCTTACGTTTTGAAGTATTCTGAGAATGAAGTATTAAGATCCAATTTCTATAAGCAAGATCAGACTTGTTAAGTATGCCGCAAGTAAGAGCTAATTCATTCATTCCATGTGTGCCACTAAATAAAGAGATTGAGCAAGTGCCACTGTGTGGAACATTTTTCTTTTTTTTAATATTGGACTTTCCAATTTTGAAATTATGGATAAAGTCCTAAATTTTCTATAGTGGCTTCTTTTCTGTCTGCATATTTTGTTAAAATTGTGGATCTAAAAGCCATATCCTGTCTTTGGTGGTGGCCTGGTAGGAATGGCTTGTCCTAGTTCTTCAAAGGTAAGATTGACCAAAGCAAGTTCTCATTGGTGGTCTGTGTTTACATCTTCCGTGTCAAGATATTTTAAAGCATGAAAATAAAGCCATTCTTGCCCTTTTTCGTGTGTTTGAAA

Publications

PMID - Link Title
No publications available for this retrocopy