Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EEF1A1P28
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr7:88638963-88640567  UCSC
Coordinates (T2T) chr7:89889603-89891207  UCSC
Coordinates (hg19) chr7:88268277-88269881  UCSC
Strand +
Parental Sequence NM_001402.6
Parental seq. overlap 1398 bp
Parental seq. overlap (%) 39.5%
Genomic Region Intergenic
Retrocopy Summary EEF1A1P28, located on chr7:88638963-88640567, is a retrocopy of the parental gene EEF1A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EEF1A1
Full Name eukaryotic translation elongation factor 1 alpha 1
Also known as CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|EF1A1|EF1alpha1|GRAF-1EF|LENG7|PTI1|eEF1A-1
Coordinate chr6:73515750-73521032
Strand -
Gene summary This gene encodes an isoform of the alpha subunit of the elongation factor-1 complex, which is responsible for the enzymatic delivery of aminoacyl tRNAs to the ribosome. This isoform (alpha 1) is expressed in brain, placenta, lung, liver, kidney, and pancreas, and the other isoform (alpha 2) is expressed in brain, heart and skeletal muscle. This isoform is identified as an autoantigen in 66% of patients with Felty syndrome. This gene has been found to have multiple copies on many chromosomes, some of which, if not all, represent different pseudogenes. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes EEF1A1P25
Bonobo Pan paniscus EEF1A1P26
Gorilla Gorilla gorilla EEF1A1P23
Orangutan Pongo abelii EEF1A1P26
Gibbon Nomascus leucogenys EEF1A1P28
Green monkey Chlorocebus sabaeus EEF1A1P27
Crab-eating macaque Macaca fascicularis EEF1A1P13
Rhesus Macaca mulatta EEF1A1P12
Baboon Papio anubis EEF1A1P16
Golden snub-nosed monkey Rhinopithecus roxellana EEF1A1P22
Marmoset Callithrix jacchus EEF1A1P30
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EEF1A1P28
TGGGTTTGCCACCAGAAAACAAGTATTGTGAAAACTACCCCAAGAGCCAAAATGGGAAAGGAACACACTCATATCAGCATTGTTGTCATTGGACACGTAGATGGGGCAAGTCCACCACTACTGGCCATCTGATCCACAAATGAGGAGGCGTCGACCAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAACGGGCTCGTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAATGTGAACATGGTATGACTATTGATATCTCCCTGCCAAAATTTGAGACCAGCAAGTACTACATGACTATCATTGATTCCCCAGGACACAGACACTTTATCAAAAACATGATTATAGGGACATCTCAGGCTGACCgAATCTGAAGCTGGTATCTCTAAGAATGGGCACACCCATGAGCATGCCCTTCTGGCTTACACACTGGGTGGGAAACAACTAATTGTTGATGTTAACAAAATGGATCCCACTGAGACACCCTACAGCCAGAAAAAATACAAATCCTTAAAGAAGTCAGCACTTTCATTAAGAAAATTAACTACAGCCCCTGGCACAGTAGTAGCATTTGTGCCAGTTTCTGGTTGGAATGGTGACACCATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACTCATAAAGATGTCAATGCCAGTGGAACCAAGTTGCTTGAGGCACTGGACTGCATCCTAACACCAGCTTGTCCAACCGACAGGCCCTCGCCCTTGCCTCTCCAGGATGTCTACAAAATTGGTGGTGTTGCTACTTTGCCTATTGGCGGAGTGGAGACTGGTGTTCTCAAACCTGGTAGGGTGATCACCTTTGCTCCAGTCAGTGTTACACACCTGAAGTAAAGTCTGTTGAAATGCACCATGAAGCTTTGAGTGACTCTTCCTCAGAACAATGTGGCCTTCAATGTCAAGAATGTGTCTGTCAAAAATGTTCATTGTGGCAATGTTGCTGGTGACAACAAAAATGATCCACCAACGGAAACAACTGGCTTCGCTGCTCAGGTGATTATCCTGAAGCATCCAGTCCAAATCAGTGCTGGCTATTCCCCTCTACTGGATTGCCACACAGATCACATTGCATGCAAATTTGCTGAGCTGAAGGAAAAGATTGATTGCCATTCTGGTAAGAAGCTGAAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGTTGCCACCAAATTCTTGAACTCTGGTGATGTTGATATGGTTCTTGGCAAGCCCATGTGTGTTGAGGTCTTCTCAGACTATCCTCCTTTGGGTTGCTTTGCTGTTCATGATATGAGATGGAGAATTGCCATGGATGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGAAAGATCACCACGTCTGCCCAGAAAGTTCAGAAGGCTAAATAAATATTATCCCTAATACCTGCCACCCCAGTCTTACTCAGTGGTAGAAGAATGGTCTCAGAACGGTTTGTTTCAATTGGCCATTTAAGTTTAATAGTAAAAGACTGGTTAACAATAACAATGCCTCATAAAACCTTCAGAAGGAAAG
>NM_001402.6
CTTTTTCGCAACGGGTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAGGAAAAGACTCATATCAACATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCTTCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTTGAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGGACATCTCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCCGAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACACAGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGATGGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGTGGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAATGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTTCGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCTGAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCCTGTATTGGATTGCCACACGGCTCACATTGCATGCAAGTTTGCTGAGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCCATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCGTGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCTAATACCTGCCACCCCACTCTTAATCAGTGGTGGAAGAACGGTCTCAGAACTGTTTGTTTCAATTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCACTTTGGTTTTCTTTTTTGCGTGTGGCAGTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATTTGTCACAGAATTTTGAGACCCATTAAAAAAGTTAAATGAGAAACCTGTGTGTTCCTTTGGTCAACACCGAGACATTTAGGTGAAAGACATCTAATTCTGGTTTTACGAATCTGGAAACTTCTTGAAAATGTAATTCTTGAGTTAACACTTCTGGGTGGAGAATAGGGTTGTTTTCCCCCCACATAATTGGAAGGGGAAGGAATATCATTTAAAGCTATGGGAGGGTTGCTTTGATTACAACACTGGAGAGAAATGCAGCATGTTGCTGATTGCCTGTCACTAAAACAGGCCAAAAACTGAGTCCTTGTGTTGCATAGAAAGCTTCATGTTGCTAAACCAATGTTAAGTGAATCTTTGGAAACAAAATGTTTCCAAATTACTGGGATGTGCATGTTGAAACGTGGGTTAAAATGACTGGGCAGTGAAAGTTGACTATTTGCCATGACATAAGAAATAAGTGTAGTGGCTAGTGTACACCCTATGAGTGGAAGGGTCCATTTTGAAGTCAGTGGAGTAAGCTTTATGCCAGTTTGATGGTTTCACAAGTTCTATTGAGTGCTATTCAGAATAGGAACAAGGTTCTAATAGAAAAAGATGGCAATTTGAAGTAGCTATAAAATTAGACTAATCTACATTGCTTTTCTCCTGCAGAGTCTAATACCTTTTATGCTTTGATAATTAGCAGTTTGTCTACTTGGTCACTAGGAATGAAACTACATGGTAATAGGCTTAACAGGTGTAATAGCCCACTTACTCCTGAATCTTTAAGCATTTGTGCATTTGAAAAATGCTTTTCGcgatcttcctgctgggattacaggcatgagccactgtgcctgaccTCCCATATGTAAAAGTGTCTAAAGGTTTTTTTTTGGTTATAAAAGGAAAATTTTTGCTTAAGTTTGAAGGATAGGTAAAATTAAAGGACATGCTTTCTGTTTGTGTGATGGTTTTTAAAAAttttttttaagatggagttcttgttgcccaggctagaatgcaatggcaaaatctcactgcaatctcctcctcctgggttcaagcaattctcctacttcagcctcccaagtagctgggattacaggcatgtgctaatttggtgtttttaatagagatgaggtttttccatgttggtcaggctggtctcaaactcctgaccttaggtgatcgcctcggcctcctaaagtgctggaattacaggcatgagccaccatgcctggccAGGACATGTGTTCTTAAGGACATGCTAAGCAGGAGTTAAAGCAGCCCAAGAGATAAGGCCTCTTAAAGTGACTGGCAATGTGTATTGCTCAAGATTCAAAGGTACTTGAATTGGCCATAGACAAGTCTGTAATGAAGTGTTATCGTTTTCCCTCATCTGAGTCTGAATTAGATAAAATGCCTTCCCATCAGCCAGTGCTCTGAGGTATCAAGTCTAAATTGAACTAGAGATTTTTGTCCTTAGTTTCTTTGCTATCTAATGTTTACACAAGTAAATAGTCTAAGATTTGCTGGATGACAGAAAAAACAGGTAAGGCCTTTAATAGATGGCCAATAGATGCCCTGATAATGAAAGTTGACACCTGTAAGATTTACCAGTAGAGAATTCTTGACATGCAAGGAAGCAAGATTTAACTGAAAAATTGTTCCCACTGGAAGCAGGAATGAGTCAGTTTACTTGCATATACTGAGATTGAGATTAACTTCCTGTGAAACCCAGTGTCTTAGACAACTGTGGCTTGAGCACCACCTGCTGGTATTCATTACAAACTTGCTCACTACAATAAATGAATTTTAAGCTTTAA

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