Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TAGLN2P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:106696738-106698095  UCSC
Coordinates (T2T) chr8:107824858-107826215  UCSC
Coordinates (hg19) chr8:107708966-107710323  UCSC
Strand -
Parental Sequence NM_003564.3
Parental seq. overlap 1314 bp
Parental seq. overlap (%) 95.4%
Genomic Region Intragenic (HCRTR1)
Intragenic (OXR1)
Retrocopy Summary TAGLN2P1, located on chr8:106696738-106698095, is a retrocopy of the parental gene TAGLN2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TAGLN2
Full Name transgelin 2
Also known as HA1756
Coordinate chr1:159918111-159925507
Strand -
Gene summary The protein encoded by this gene is similar to the protein transgelin, which is one of the earliest markers of differentiated smooth muscle. The specific function of this protein has not yet been determined, although it is thought to be a tumor suppressor. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2013]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes TAGLN2P1
Bonobo Pan paniscus TAGLN2P1
Gorilla Gorilla gorilla TAGLN2P1
Orangutan Pongo abelii TAGLN2P1
Gibbon Nomascus leucogenys TAGLN2P2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TAGLN2P1
GCAGCTGCAGCCATTGCCTTGAGTGAGTGTGCCGCTCTCCAGCCCGTTTGAACGCTCCCCGCAGCCACCGCCACCCATTGGAATGGCCAACAGGGGACCTGCATTATGGCCTGAGCCAGGAGGTGCAGCAGAAGATTGAGAAACAGTATGATGCAGATCTGGAGCAGATCCTGATCCAGTGGATCACCACCCAGTGCCGAAAGGATGTGGGCCGGTCCCAGCCTGGACGCGAGAACTTCCAGAACTGGCTCAAGGATGGCACGGTGTTATGTGAGCTCAATAATGCACTGTACCCCAAGGGGCAGGTCCCAGTAAAGAAGATCCAGGCCTCCACCATGGCCTTCAAGCAGATGGAGAAGATCTCTCAGTTCCTGCAAGCAGCTGAGCGCTATGGCATTAACACCACTGACATCTTCCAAACTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGAGGAATCTGGGTGGGTTGGCAGTAGCCTGGGATGATGGGCTCTTCTCTGGGGATCCCAACTGGTTCCCTAAGAAATCCAAGGAGAATCCTCGGAACTTCTCGGATAACCAGCTGCAAGAGGGCAAGAACGTGATCGGGCTACAGATGGGGGGCATCTCAGGCAGGCATGACTGGCTACTGGATGCCACACCAGATCCTTTGATCCCACCCCAGGCCTTGCCCCTGCCCTCCCACGAGTGGTTAATATACATGTAGATATATATTTTAGCAGTGACATTCCCAGAGAGCCCCAGAGCTCTTAAGCTCCCTTCTGTCAGGGTGAGGGGTTCAGCCTGTCCTATCACCTCTGAGGTGCCTGTTGGCAGCCTCTCCCCCGTGCTTACTAATACATTCCCTTCCCCATACCCATCAAAACTGGACCAACTGGCCTCTTCTTTTCCCCTGGGATCAAAATTTAGGGGCCTCAGTCCCTCACCGCCATGCCCTGGCCTGTTCTGTCTCTCCTTTTTCCCCCTGGCCTGTTCTGTCTCTGAGCTCTGTGCCCTCCGTTCATTCCATGGCTGGGAGTCAGTGATGCTGCCTCTGCCTTCTGATGCTGGACTGGCCTTGCTTCTACAAGTATGCTTCTCCCACAGCTGTGGCTGCAGGAACTTAATTTATAGGGAGGAGCCTGTGGCAGCTGCTGCCCCAGCCACAGCTGCACTGACTGTGCTCACCACACATCTGGGGCAGCCTTCCCTGGCAGAGGCCCTCATGGCTTCTCATTTTCCATTCCCTTCACTGTGGCTAAGGGGTGGGGTGAGGGGACGGAGAGGGAGGGCTGCCTACCATGGTCTGGGGCTTGAGGAAGATGAGTTTGTCGATTTAAAGAATTTGTCATTTCTGAAT
>NM_003564.3
ACTTGCAGCTGCAGCCCTTGCCTTGAGTCAGTGCGCCGCTCTCCAGCCCGCTTGAACGCTCCCCGCAGCCACCGCCACCCATTGGAATGGCCAACAGGGGACCTGCATATGGCCTGAGCCGGGAGGTGCAGCAGAAGATTGAGAAACAATATGATGCAGATCTGGAGCAGATCCTGATCCAGTGGATCACCACCCAGTGCCGAAAGGATGTGGGCCGGCCCCAGCCTGGACGCGAGAACTTCCAGAACTGGCTCAAGGATGGCACGGTGCTATGTGAGCTCATTAATGCACTGTACCCCGAGGGGCAGGCCCCAGTAAAGAAGATCCAGGCCTCCACCATGGCCTTCAAGCAGATGGAGCAGATCTCTCAGTTCCTGCAAGCAGCTGAGCGCTATGGCATTAACACCACTGACATCTTCCAAACTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGATGAATCTGGGTGGGCTGGCAGTAGCCCGAGATGATGGGCTCTTCTCTGGGGATCCCAACTGGTTCCCTAAGAAATCCAAGGAGAATCCTCGGAACTTCTCGGATAACCAGCTGCAAGAGGGCAAGAACGTGATCGGGTTACAGATGGGCACCAACCGCGGGGCGTCTCAGGCAGGCATGACTGGCTACGGGATGCCACGCCAGATCCTCTGATCCCACCCCAGGCCTTGCCCCTGCCCTCCCACGAATGGTTAATATATATGTAGATATATATTTTAGCAGTGACATTCCCAGAGAGCCCCAGAGCTCTCAAGCTCCTTTCTGTCAGGGTGGGGGGTTCAGCCTGTCCTGTCACCTCTGAGGTGCCTGCTGGCATCCTCTCCCCCATGCTTACTAATACATTCCCTTCCCCATAGCCATCAAAACTGGACCAACTGGCCTCTTCCTTTCCCCTGGGACCAAAATTTAGGGGCCTCAGTCCCTCACCGCCATGCCCTGGCCTATTCTGTCTCTCCTTCTTCCCCCTGGCCTGTTCTGTCTCTGAGCTCTGTGTCCTCCGTTCATTCCATGGCTGGGAGTCACTGATGCTGCCTCTGCCTTCTGATGCTGGACTGGCCTTGCTTCTACAAGTATGCTTCTCCCACAGCTGTGGCTGCAGGAACTTAATTTATAGGGAGGAGCCTGTGGCAGCTGCTGCCCCAGCCACAGCTGCACTGACTGTGCTCACCACACATCTGGGGCAGCCTTCCCTGGCAGGGGCCCTCGTGGCTTCTCATTTTCCATTCCCTTCACTGTGGCTAAGGGGTGGGGTGAGGGGATGGAGAGGGAGGGCTGCCTACCATGGTCTGGGGCTTGAGGAAGATGAGTTTGTTGATTTAAATAAAGAATTTGTCATTTTTGAA

Publications

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