Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name SUB1P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:11789951-11793265  UCSC
Coordinates (T2T) chr8:7947046-7950357  UCSC
Coordinates (hg19) chr8:11647460-11650774  UCSC
Strand +
Parental Sequence NM_006713.4
Parental seq. overlap 3076 bp
Parental seq. overlap (%) 88.2%
Genomic Region Intergenic
Retrocopy Summary SUB1P1, located on chr8:11789951-11793265, is a retrocopy of the parental gene SUB1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SUB1
Full Name SUB1 regulator of transcription
Also known as P15|PC4|p14
Coordinate chr5:32531778-32604079
Strand +
Gene summary Enables identical protein binding activity; single-stranded DNA binding activity; and transcription coactivator activity. Involved in negative regulation of DNA metabolic process and regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. Part of transcription regulator complex. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SUB1P1
Bonobo Pan paniscus SUB1P1
Gorilla Gorilla gorilla SUB1P1
Orangutan Pongo abelii SUB1P1
Gibbon Nomascus leucogenys SUB1P2
Crab-eating macaque Macaca fascicularis SUB1P2
Rhesus Macaca mulatta SUB1P2
Baboon Papio anubis SUB1P2
Golden snub-nosed monkey Rhinopithecus roxellana SUB1P2
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SUB1P1
GAGTCGCGAGCGAACAAGCAGGAGGGTGTTCGACTGCTAGAGCTGAGCTAAGCGATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCTGGCAGTGATCCTGACAGTGAGGTTGACAAAAAGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAGCAAAAGACAGGTGAAACTTCGAGAGCTCTGTCATCTTCTAAACAGAGCGGCAGCAGCAGAGATGATAACAAGTTTCAGATTGGGAAAATGAGGTACGTTAGCGTTGGAGATTTTAAAGGGAAAGTGCTAATTGATACTAGAGAATATTGGATGGATCCTGAAGGCGAAATGAAACCAGGAAGAAAAGGTATTGCTTTAAATCCAGAACAATGGAGCCAGCTGAAGGAACAGATTTCTGTCATTGATGATGCAGTAAGAAAACTGTAAAATCCGAGTCATACAAACAAAACCTGTACTTTTCTAGTTGTTTTAATCTGTCTTTTTACATTGGCTTTTGTTTTCTAAATGTTGTTCTCCAAGCAATTGTATGTTTGGATTGCAGAAGAATTTGTAAGATGAACTTTTTTTTAATGTGCATTATTAAAAATGTTGAGTGAAGCAATTGTCACCTTTATTAAGGAGGATTGCTTTGTGCCCACCACCTAGTGTAAAATAAAATCGAGCAATACAGTCTTAAATGTTGTGGCCTTTTTTGATCATAAGAGTTGGTACTGTTTAAGGCCAAAAGTAATAGTTTTTATAAATCTTTTAGTCTCAACTCAGCTTTTACAATAAAAAGGATTTGTATTGCATTGAGTTTATAAACTTTTGGTTTGTGAAATCCATATTTGATCTGTTTTCTTCCAATCAAATGTTTATTTGGAAAGTCAGTGAAACTGTCAAAATGTTACCTCAATAAGATATTTATAATTGTATGAGAACTACAATCACCAAATCGACTGTCTTCAGTATTAGCAGATCTAGTTTGATAAACAAATGGCTTGTGTGAAAACCGAGCAGGTGTTTGTCATTACCCATAGTGTTCTGTGTAGTTATTGCTTAGTCTGCAGAAAATAATGACCTAGATGAGATGTCTGACTTGCTTTCACTTATTAAACATGTTCACCATGGGATGATGTCTGTAACGTCAGATATTGTTAAACTAGACTAGGATTTAATAAAAATTGTGAAAGCTTACTGGCCTAACAGTTTATTTTATAATATTGAGTATGAATTATATGTAGCCAGAGATGTCAATAAGGCTTACTGTCGGTAGGTAATATGGTTAGTTTGTAGGGAAAAGAGCGTATGAGCACATGCTTGTGTATTTCGGCCTTTGCCCCAGTAGATCAGACAATGACATTCTAGTCTTGATGTTACTAAGTTTTAGCAGACACTAGCAAGTGGTTTGTATTTAACCACAGCCATGAAGCAGACAGACTGAGGCACAGATTTTAGTGGCTTTGTGGCAATAAATAGGGCATGGTGTGCCTTAGGAAAAGAATGTTTATAAAGGGAACTATAACTGAAATTAAAGGAGGCGGCAGTGAAGAGGAAATAATTATCTTCTATCTAAATGATATACATATGATATTTTGAGATTTTTATAACTGCAGTGGAACACAATTCTGGGTAGAGTAGAAAAAGGAAAGGTTTAAAGACATATAAAAGATTCTTGTTGACAATTTATTTTTGGTAGCAAATCTCAAATGATTACCTGCTATTAAGGGCTGCCATATCAGAGTTTTGCACTATTTTGCTACCAAGTTTGATTCGTACATCTAAAACATTTTGTAGTTGATTGTCAAGGACTTAATTTGAAAATCATTTGCCAGGCCACATAGTTATCAATTTTCTTTCTAGCAGCTATTCTGTTGTATTTTTAAAACATTTTTTAGATGACTTTTTAAAGTCTATTTAGCAGTAACCTTAAGAGGTGCATATTAGTAAAATAAATCTCTTCTTGTCATTTAGCCTTCATCAAATAATAGGTACCAATGTATTAAAAATATGTGGTTTTTTTTTTTTTcCAAAATTTGTATTTTAGACACGTCATGCTTGATTGGTAACTTCCCTCCTTTTTTGGGGAACATGTTTGTGTCCTATTAACTTAATTGGATAGATTTTTAAGTATTTCTTATTTTTGGCACACAGGATGGTTAGAATACAGAACTTTGATTTTTGGTGTAGATACGGAGAGAATGATGGGTAAATTTCCTAGGTTTATATGAATTTAGGGGGTGTACGCATTTTGAAACGCTATTAACAGATGGTGCTGAAATCTATTGCCTACATGTTTTCTAGCTCTTTAGCATTATGTTAATGAAGCCTCCATATAAGGAGTGTTTCTCTGGCACAGTTGGTAAGTTGACTGCTAACTTCATTGAAATGTGTTACTGGATATGCAGTATACTGAAATTATTGATCTTTTTTGTGTATAGGAAAAGAGAAGTGGGTTAAAAGAAGCAAATTAACTTGTTCTGAAAAGAAAGTATAGATTAATTTTGTTTTCTGTTTAAATTTTATCTCCTTGGTAAGACTTTTTTTCCAAGGCAGAAAGCTTGGCATTTTTAGGCATAGATCCCTTACCTTATAATGTCAAAATGAATTTAATTCCAGTACTCAGGTTTTTCCCTTTAACAGACTCTATGTGTATCAGGGCTTTCTAATGGGTTTTTCCTCTTTGTTTTTAAAATGTGAGCAGCTTTTGACCAATTTCCAGTGCTCTTAGCATTTTACTTAAAGAACAACCACTAAAAAAGAAAAACTTCGTAATTTGCTTGTCTTTTGCTTTGCTTTATTAATGTCTAAGAACTTAAGAATACTCCTACCTCATTAGCTACTCAAGATGCTGTGACGACCAAATCTATTCTACATAATGTGTTTAGAAACAAAGACTTGGGTGAAAAATGAAATAAGTATATTCTGACTTGGCTATTGAGGGTAAAAAGAAAGAATTAAGTATTAAGTGTTCCTTGTAGGAGATATGTTAGTAGAATACCATAAAAGTTTGAAAATTTTAAAAAGTACTAATATTTAGGTATCCTGAAATTATTTGCAGTTCATTTTTTATGGAAATTAATCCAGTGAATCACGCAAAAGTTTTTTTTTTAAATGGTGTTTTTCCAGATCAACTCTAGGGTAAACATTCACATAATCACAAATATGCAATTCTGTAATTGTGAAATGCCTGTATGTTTTGTTTTCATACATCTTCCTTGGAGATGTCTGAATATAATACTCCATCTATGAATATTTTAAATGTTGAAATAAAAGTAAGAAATGTG
>NM_006713.4
ACTTCCGGTTCTCTGTCAGTCGCGAGCGAACGACCAAGAGGGTGTTCGACTGCTAGAGCCGAGCGAAGCGATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCTGGCAGTGATTCTGACAGTGAGGTTGACAAAAAGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAACAAAAGACAGGTGAGACTTCGAGAGCCCTGTCATCTTCTAAACAGAGCAGCAGCAGCAGAGATGATAACATGTTTCAGATTGGGAAAATGAGGTACGTTAGTGTTCGCGATTTTAAAGGCAAAGTGCTAATTGATATTAGAGAATATTGGATGGATCCTGAAGGTGAAATGAAACCAGGAAGAAAAGGTATTTCTTTAAATCCAGAACAATGGAGCCAGCTGAAGGAACAGATTTCTGACATTGATGATGCAGTAAGAAAACTGTAAAATTCGAGCCATATAAATAAAACCTGTACTGTTCTAGTTGTTTTAATCTGTCTTTTTACATTGGCTTTTGTTTTCTAAATGTTCTCCAAGCTATTGTATGTTTGGATTGCAGAAGAATTTGTAAGATGAATACTTTTTTTTAATGTGCATTATTAAAAATATTGAGTGAAGCTAATTGTCAACTTTATTAAGGATTACTTTGTCTGCCCACCACCTAGTGTAAAATAAAATCAAGTAATACAATCTTAACTGTTGTGGCCTTTTTTGATCATAAGAGTTGGTACTGTTTAAGGCCAAAAGTAACAGTTTTTATAGATCTTTTAGTTTCAACTCAGCTTTTACAATAAAAAGGATTTGTATTGCATTGAGTTTATAAACTTTTGGTTTGTGAACTTCATATTTGATCTTTTCTCTTCCAATCAAATGTCTAGGCTTGTTTGACTTCCACCCCCAATGGTTTTTCACTCTTTTTATTTACTTCATTTTCCTTTAATAACTTAATCTCTTCATGTTCAGTTTTTACTTCACTCTTTATTCTTTTCTTTGATTATGGTATGCTTATTTGGAAAGTCAGTGAAACTGTCAAAATGTTATCTCAATAAGATACTTATATGAGAACTACAATCACCGAATCTACTGTATTCAATATTAGCAGATCTAATTTGATAAACAACATGGCTTGTGTGAAAACTGAGCAGGTGTTTGTTTACCCATAGTGTTCTGTGTAGTTATTGCTTAGTCTGCAGAAAATAATGACTTAGATGAGATGTCTGACTTGCTTTCACTTATTAAACATGTTCACCATGGGATGATGTCTGTAACATCAGATATTGTTCAACTAGACTAGGATTTAATAAAAATTGTGAAAGCTTACTGGCCTAACATTTTATTTTATAATATTGGGTATGAATTATATGTAGCCAGAGATGTCATTAAGCTTTACTGTTATAGTAGGTAATATGGTTAGTTTGTAGGGAAAAGAGCATATGAGCACATGCTTGTGTATTTTGGCCTTTGCCCCAGTAGAACAGACCAATGGCATTCTAGACTTGATGATACTAAGTTTTAGCAGACACTAGTAAGTGGTTTGTATTTAACCATACTGATGAAGCAGACAGATTGAGGCACAGATTTTAGTGGCTTTGTGGCAATAAATAGGGCATGGTGTGCCTTAGGAAAAGAATGTTTATAAAGGGAATTATAACTGAAATTAAAGGAGGCGGCAGTGAAGAGGAAATAATTCTCTTCTATCTAAATGATATACATATGATATTTTGAGATTTTTATAACAGCAGTGGAACACAATTCTAGGTAGAGTAGAAAAAGGAAAGTTTTAAAGACATATAAAAGATTCTTGTTGACAAATTATTTTTGGTAGCAAATCTCAAATGGTTACCTGCTATTAAGGTCTGCCATATTAGAGTTTTGCACTATTTTGCTACCAAGTTTGATTCATACATCTAAAACATTTTGTAGTTACTTGTCAAGGACTTAATTTGAAAATCATTTGCCAGGCCACATAGTTATCAATTTTTTTTTCTATCAGCTATTCTGTTGTATTTCTAAAACATTTTTTAGATGACTTTTTAAAGTATATTTAGCAGTAACCTTATGAGGTTCAAATTGGTAAATCTCTTGTAATTTAGCCTTCATCGAATAATAGGTACCAGTGTATTAAAAATGTGTATTTTTTgcagccccttgaaccagagtaggttcagagaaactccCAAAGTTTGTACTTTAGACACATCATGCTTGATTGGTAACTTCCCTCCTTTTTTGGGGAACATGTTTGTGTCCTATTAACTTAATTGGATAGATTTTTAAATATTTCTTATTTTTGGCACACGGAAAGGGTAGTTCGAGTACAGAACTTTGATTTTTGGTGTAGATGCAGAGGGAATGATGGGTAAATTTCCTAGGTTTATGTGAATTTAGGGGGTGTATGCATTTTGAAACAATCTACTAACAGATGGTGCTGAAATCTATTACCTACATGTTTTCTAGTTGTTCAGCATTATGTTAATGAAGCCTCCATATAAGGAGTGTTTCTCTGGCACAGTTGGTAAGTTGACTGCTAACTTCATTTAAATGTGTTACTGGATATGCAGTATACTGAAATTATTAATCAGTTTGTGTATAGGAAAAGAGAACTGGGTTAAAAGCAAATTAACTTGTTCTGAAAAGAAAGTATAGATTAATTTTGTTTTCTGTTTAAATTTTATCTCCTTGGTAAAGATTTTTTTTTCCTGGGCAGAAAACTTGGCATTTTTAGGCGTAGATACCTTACCTTACAATGCCAAAATGAATTTAATTCCAGTACTCAGGTTTTTCCCTTTAACAGACTCTATGTGTATCAGGGCTTTCTAATGGGTTTTTCCTCTTCGTTTTTAAAATGTGAGTAGCATTTGACCAATTTCCAGTGCTCTTAGCATTTTACTTAAAGAACAACCACTACAAAAGAAAATCTTTGTAATTTGATTGTCTTTTGCTTTGCTTCATTAATGCCTAAGAACTTAAGAATACTCCTACCTCATTAGCTACTCAAGATGCTGTGACGATCAAATCTATTCTACATAATGCGTTTAGAAACAAAGACTTGGGTGAAAAATGAAATAAGTATATTCTGACTTGGCTATTGAGGGGAAAATTCAGTATTAAGTGTTCCTCACAGGAGATATGTTAGCAGAATACTATAAAAGTTTGAAATTTTTAAAAAGTAAAAGTACTTAAATTTAGGTATCTCTCCTGAAATTCTTTGCAGTTCATTTTTTATGGCAGTTAATCCAGTGAAACACTCAAAAGTTTTTTTTTTTTTAAAAGTGTTTTTCCAGATAAACTGTAGGGTGAACATTCACATAATCACAAATATGTAATTCTGTAATTGTGGAATGCTTGTATGCTTTGTTTTCGTACATCTTCCATGGAGATGTCTGAATATAATACTCCATCTGTGAATATTTTAAATGTTGAAATAAAAGTAAGAAATGTG

Publications

PMID - Link Title