Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name NCAPGP1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:120635499-120638048  UCSC
Coordinates (T2T) chr8:121763942-121766491  UCSC
Coordinates (hg19) chr8:121647739-121650288  UCSC
Strand -
Parental Sequence NM_022346.5
Parental seq. overlap 1457 bp
Parental seq. overlap (%) 31.2%
Genomic Region Intragenic (SNTB1)
Retrocopy Summary NCAPGP1, located on chr8:120635499-120638048, is a retrocopy of the parental gene NCAPG. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NCAPG
Full Name non-SMC condensin I complex subunit G
Also known as CAPG|CHCG|NY-MEL-3|YCG1
Coordinate chr4:17810942-17844865
Strand +
Gene summary This gene encodes a subunit of the condensin complex, which is responsible for the condensation and stabilization of chromosomes during mitosis and meiosis. Phosphorylation of the encoded protein activates the condensin complex. There are pseudogenes for this gene on chromosomes 8 and 15. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NCAPGP1
Bonobo Pan paniscus NCAPGP1
Gorilla Gorilla gorilla NCAPGP1
Orangutan Pongo abelii NCAPGP1
Gibbon Nomascus leucogenys NCAPGP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NCAPGP1
TAAAATAATAAAAAAAAAAGCCTTGAGTTCTTTAGAACTCAGTAGCCATCTTGCAAAAGATCTTCTGGTTCTATTGAATGGGATTCTGGAGCAAGTAAAGGAGAGGGCATATCTGAAAGCTTTGGAGAAAATCAAGATTCGGTTAGCAAAAAGGAAATAAAGAATTTGGTGACCAGCCTGAAGCAGCAAAGGATGCCAGCTTGACTACAACTATTTTTCAAAATGAAGATGAAAAGAATAAGGAAGTACATATGACTCTTCTTAGGGATGTAAAAGCAACCCTGGCATCAAAATCTACTCAACAAAAGACTAACAGGGGACAGAGAAAAGTGATAGCTTCAACTATGATGAAGAGGAGACATCACATTGCTGAGGCTGACTCTGAAAGTGACCATGAAGTTCTAGAACCAGAATCAGAAATGAAGATGAAACTAGCAAGACAAGCCAAAACAGCAGTGCTGGAAAAAAGTAAACTTAATCTTGCACAATTTCTCAATGAATATAGAAGTTAGGAAAGATGGTGGAGGTAGAGTTCTTTAAAATTATCTTCAGTTCTTTGCTTTAATAAAGTACAGAATTTATCTCAGAGATTGGGGCATACATTGTTACTGTTGGTGTTAATAATGACCCAGCTGATGCAAGAAAGGAAGGACTCAAGATGGCTGAAATAAAAGTTAAGCGTATTGAAGCCAAAGAAGCTTTAGAAAATTACATTACCTTACAGGATTTTAACTCGGCATCAAAATTAAAAGAAGAAATAAGAGTATTAGAAGATGTCAAAAGAAACCTTTTGCAAGAGACAGAGCAACTTGAAATCAAAGAAGTCCATGTAGAGAAGAATGACGCAGAAACATTACAGAATGTCTTATCTTATGCTGTGAACTGTTGAAGCAGATGTCCATTTCAACAGGCATAAGTGCAGCCATGAATGGGATCATAGAATTTTTATTCTTCCTAAAATAATAAATGTTTACCCTATAGTAAGAAGCCTGGCTGTTTTATGCTTGGGAGCTGCAGACTACAGAATCAGAATTTTGCACATAACACTTTGTGTTATTATTGCAGGTTTTGCAAATTGATGATGTCACAATAAAAATAAGTACTTTAAAGTGAATCTTTGACTAACTGATAATGTTTGAGGTTGAACCACTTAAACCTAAAAAATCAAAGCCTTTTAATATGAAGGTACAGAGATAAACAGTGATTTATGAGCAACAGTCATAAAAAGTTGAAAAGGCCCTTACAGCGAAGAATGTTCTGAAACTCCTTTCTGATTTCTTAGGTAGTGAGGTATCTACACTTAGGACAGGAGCCACAGGAGGACTAGCCAAGCTGATGTTCTCTGGGCTTTTGGTCAGCAGCAGACTTTTTCCCATCTTATTTTGTTATGGTAGAATCCTGTGACTGAAGAGGATGTTCGACTTTGACATTGCCTAGGCATGCTCTCCCCCATGTTTGCTTATGCAAACAGGACTAATCAGGAATACTTTAAAGAAGTTTCTCTTCCAAGCCTGCAAACACTGGCCAATGCTCCTGCATCTTCTCCTTTAGCTGAAATTGATATCAGAAATGTTGTTCAGTTACTTATAGATTTGACAAGAACAAGTAGATTAAATCCTCAGGCCAAGAATTCCTAAGATTATCAGGCCTTAACAGTACATGACAATTTGGCTATGAAAATTTGCAATGAGATCTTAAGAAGTCCATGCTCACCAGAAATTCGGGTCTCTATAAAAGCCTTGAGTTCTa
>NM_022346.5
GTCATAGAAGACTACTCGGAGAGCGCTGCCTCTGGGTTGGCGGGCTGGCAGGCTGTAGCCGAGCGCGGGCAGGACTCGTCCCGGCAGGGTTCCAGAGCCATGGGAGCGGAAAGGAGGCTGCTGTCGATTAAGGAGGCCTTTCGGCTGGCGCAGCAGCCGCACCAGAACCAGGCGAAGCTGGTGGTGGCGCTGAGCCGCACCTACCGCACGATGGATGATAAGACAGTTTTTCATGAGGAGTTCATTCATTACCTTAAATATGTTATGGTGGTCTATAAACGTGAACCAGCTGTGGAGAGGGTAATAGAATTTGCAGCAAAGTTTGTTACCTCATTTCACCAATCAGATATGGAAGATGATGAGGAAGAGGAAGATGGTGGCCTTTTAAATTATTTGTTTACTTTTCTCTTAAAGTCTCATGAAGCAAACAGCAATGCAGTGAGATTTAGAGTGTGCCTGCTCATAAACAAGCTTTTGGGAAGTATGCCAGAAAATGCTCAGATTGATGATGATGTGTTTGATAAAATTAATAAAGCCATGCTTATTAGATTGAAAGATAAGATTCCAAATGTGAGAATACAGGCAGTTCTGGCGCTTTCACGACTTCAGGATCCCAAGGATGATGAATGCCCAGTGGTTAATGCATATGCTACTTTGATTGAAAATGATTCAAATCCAGAAGTTAGACGGGCAGTGTTATCATGTATTGCACCATCAGCAAAGACTTTGCCAAAAATTGTAGGGCGCACCAAGGATGTGAAAGAGGCTGTCAGAAAGCTGGCTTATCAGGTTTTAGCTGAAAAGGTTCATATGAGAGCTATGTCCATTGCTCAGAGAGTAATGCTCCTTCAACAAGGTCTTAATGACAGATCAGATGCTGTGAAACAAGCTATGCAGAAGCATCTTCTTCAAGGCTGGTTACGGTTCTCTGAAGGAAATATCTTAGAGTTGCTCCATCGGTTGGATGTAGAAAATTCTTCTGAAGTGGCAGTCTCTGTTCTCAATGCCTTGTTTTCAATAACTCCTCTCAGTGAACTGGTGGGACTCTGTAAAAACAATGATGGCAGGAAATTGATTCCAGTGGAAACATTAACTCCTGAAATTGCTTTGTATTGGTGTGCCCTTTGTGAATATTTGAAATCAAAAGGAGATGAAGGTGAAGAATTTTTAGAGCAGATTTTGCCAGAGCCTGTAGTATATGCAGACTATTTATTGAGTTACATCCAGAGCATTCCAGTTGTTAATGAAGAACACAGAGGTGATTTTTCCTATATTGGAAATTTGATGACAAAAGAATTCATAGGTCAACAATTGATTCTAATTATTAAGTCTTTGGATACCAGTGAAGAAGGAGGAAGAAAAAAACTGCTGGCTGTTTTACAGGAGATTCTTATTTTACCCACAATCCCAATATCCCTGGTTTCTTTTCTTGTTGAAAGACTACTCCACATCATTATAGATGATAATAAGAGAACACAAATTGTTACAGAAATTATCTCAGAGATTCGGGCGCCCATTGTTACTGTTGGTGTTAATAACGATCCAGCTGATGTAAGAAAGAAAGAACTCAAGATGGCTGAAATAAAAGTTAAGCTTATCGAAGCCAAAGAAGCTTTGGAAAATTGCATTACCTTACAGGATTTTAATCGGGCATCAGAATTAAAAGAAGAAATAAAAGCATTAGAAGATGCCAGAATAAACCTTTTGAAAGAGACAGAGCAACTTGAAATTAAAGAAGTCCACATAGAGAAGAATGATGCTGAAACATTGCAGAAATGTCTTATTTTATGCTATGAACTGTTGAAGCAGATGTCCATTTCAACAGGCTTAAGTGCAACCATGAATGGAATCATCGAATCTTTGATTCTTCCTGGAATAATAAGTATTCATCCTGTTGTAAGAAACCTGGCTGTTTTATGCTTGGGATGCTGTGGACTACAGAATCAGGATTTTGCAAGGAAACACTTCGTATTACTATTGCAGGTTTTGCAAATTGATGATGTCACAATAAAAATAAGTGCTTTAAAGGCAATCTTTGACCAACTGATGACGTTCGGGATTGAACCATTTAAAACTAAAAAAATCAAAACACTTCATTGTGAAGGTACAGAAATAAACAGTGATGATGAGCAAGAATCAAAAGAAGTTGAAGAGACTGCTACAGCTAAGAATGTTCTGAAACTCCTTTCTGATTTCTTAGATAGTGAGGTATCTGAACTTAGGACTGGAGCTGCAGAAGGACTAGCCAAGCTGATGTTCTCTGGGCTTTTGGTCAGCAGCAGGATTCTTTCTCGTCTTATTTTGTTATGGTACAATCCTGTGACTGAAGAGGATGTTCAACTTCGACATTGCCTAGGCGTGTTCTTCCCCGTGTTTGCTTATGCAAGCAGGACTAATCAGGAATGCTTTGAAGAAGCTTTTCTTCCAACCCTGCAAACACTGGCCAATGCCCCTGCATCTTCTCCTTTAGCTGAAATTGATATCACAAATGTTGCTGAGTTACTTGTAGATTTGACAAGACCAAGTGGATTAAATCCTCAGGCCAAGACTTCCCAAGATTATCAGGCCTTAACAGTACATGACAATTTGGCTATGAAAATTTGCAATGAGATCTTAACAAGTCCGTGCTCGCCAGAAATTCGAGTCTATACAAAAGCCTTGAGTTCTTTAGAACTCAGTAGCCATCTTGCAAAAGATCTTCTGGTTCTATTGAATGAGATTCTGGAGCAAGTAAAAGATAGGACATGTCTGAGAGCTTTGGAGAAAATCAAGATTCAGTTAGAAAAAGGAAATAAAGAATTTGGTGACCAAGCTGAAGCAGCACAGGATGCCACCTTGACTACAACTACTTTCCAAAATGAAGATGAAAAGAATAAAGAAGTATATATGACTCCACTCAGGGGTGTAAAAGCAACCCAAGCATCAAAGTCTACTCAGCTAAAGACTAACAGAGGACAGAGAAAAGTGACAGTTTCAGCTAGGACGAACAGGAGGTGTCAGACTGCTGAAGCCGACTCTGAAAGTGATCATGAAGTTCCAGAACCAGAATCAGAAATGAAGATGAGACTACCAAGACGAGCCAAAACCGCAGCACTAGAAAAAAGTAAACTTAACCTTGCCCAATTTCTCAATGAAGATCTAAGTTAGGAAAGACGATGGAGGTGGAATCCTTTAAGATTATGTCCAGTTATTTGCTTTAATAAAGAAGAAGTTACCCTTGTCAAAATCAGAACAAACCTGATGTCTTTCTGAAGATTTTCTGCTGTGCGCTTCCACGTTACTTTGGCCTGTATTAAAGCAGTAGAGCAGCATCAGTTATTATAGTCCAGAAAAAGTGTGCATCAGTCAGTCACACAGATTTATCACAAtctgaggtgggcctaggaatctcatttttaaatagtctctccaagtgattcttatgAACTCTTTATGTTTAAAATCATGTCATTATGGAAAACTTACAAGTGTAACTAGCTAGTAGCTTGCATTTGAGAAGCTTATGACTTAGATGGGCAGAATCAACAAAGATGAAACCGCCTGAGGACACATTTAACAAGTAACATTTCTAGGGAAAATGAAGGAAGTACCACAAACTGGCTAGAAAGGAGCTTATCAATCACCAGTGAGGAAGACCAGTATAACGTTCAACAACAGTTATTTTGACAAAAACTTATTTTGTGATTCCTACAGTGAAAACATTTTTGGTGATATCTGCCTGGGAAATCTCTCTTCCTAAAGTATTTGTATATGGGAGTCCTTGTTTGTGAATGTTTCCTGGATTAGGGAGGTGTCAACATAAATGTATTATTAACCATGAAGCTGCTCGCTATATTTTTGGCATAACAAAATAATATTTATTTACTGTGGATAATAATTCTAGTGGGAATATAATGTGACAGGAACTTCTCTTTATATACGCTACCAATTTATGAGCACTATTCACTGTCAATTTCATTTCTTGTCTTTTGAAATTGACACTTGGCCTGACTTACGAAACTTGTACTATATGAAATTGGTCCTCTTTTCTGCAATACCCAACGAAACACCTTTTCTCTTTATTATTCAGAAATGTCCTAACATGGATCTGTTTGTTTTAATAATTGTGCTTTTTTTAGGCTTATCATCTACTAGAGGCCATTTACTTAAGGTGAAATTTTAAGATGGAGCTAAAGTAAGATCACTGGTTTTTAGAACCAAATTGCTATACATATGTGCCTCATAGAACTTATAAAAGGAGTCAAAGTTTCAAAGCAAGATAGTTATTAAGCAAAAGGAAAAATGGTAATGATAGAAAGTCAGTTAAAAATAGATGATTGTTCTTCATTCTGTTTGTTGGCTCTGTGTTCTCCTGTGCTTCAGATTCCTTATGTGTTGTTGTTTTAAAGACAATTTGCAGGGGGTTGGGAGAAGGACTGAAAAGGTACATTAAGTGTGCTGTAAGGAAAAGTCTTAGAAACATAATAAGCTAAAATCCCATTCACACATGGCCAGGCTATCCAAAAAGAAAGGAGCCATGTTCTCATGTGGTTTACCATACCAAAGCTTGCTTTCTCTGGCATGGGAAAAATAAATTTAAGCACCAAA

Publications

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