Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name NETO2P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:124141912-124143884  UCSC
Coordinates (T2T) chr8:125274357-125276329  UCSC
Coordinates (hg19) chr8:125154153-125156125  UCSC
Strand +
Parental Sequence NM_018092.5
Parental seq. overlap 1660 bp
Parental seq. overlap (%) 22.3%
Genomic Region Intergenic
Retrocopy Summary NETO2P1, located on chr8:124141912-124143884, is a retrocopy of the parental gene NETO2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NETO2
Full Name neuropilin and tolloid like 2
Also known as BTCL2|NEOT2
Coordinate chr16:47077703-47144025
Strand -
Gene summary This gene encodes a predicted transmembrane protein containing two extracellular CUB domains followed by a low-density lipoprotein class A (LDLa) domain. A similar gene in rats encodes a protein that modulates glutamate signaling in the brain by regulating kainate receptor function. Expression of this gene may be a biomarker for proliferating infantile hemangiomas. A pseudogene of this gene is located on the long arm of chromosome 8. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Jan 2011]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NETO2P1
Bonobo Pan paniscus NETO2P1
Gorilla Gorilla gorilla NETO2P1
Orangutan Pongo abelii NETO2P1
Gibbon Nomascus leucogenys NETO2P1
Green monkey Chlorocebus sabaeus NETO2P1
Crab-eating macaque Macaca fascicularis NETO2P1
Rhesus Macaca mulatta NETO2P1
Baboon Papio anubis NETO2P1
Marmoset Callithrix jacchus NETO2P1
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NETO2P1
AAAGATGGACAAAATGTTGGAATCAAGCACATTCCTGCAATCCAGTATGACATTTGGATTCAAACCAGCAATGAGGTCATTTTGCTTCACCAAATTATCCTGTCTCATATCCACCAAACAAGGAGCGTATCTACATTTTGGACGCTGCTCCACGTGAAAGAATCGAGCTTCGATGAACATTATTATATAGAGCCATCATTTGAGTGTCGGTTTGATCCCTTGGAAGTTCCAGATGGGCCATTTGGTTTCTCTCCCCTTATAGATTATTACTGCGGCATGAAAAACCCTCCATTAATCAGATCAACAGGGAGATTCATGTGGATTAAGTTTAGTTCTGATGAAAAGAACTAATATTCATTTATTCCAGATCCAGACTTTACTTACCTAGGAGATTGTGGGTTTCAGCTCTTGGGAGCCGATGGAATAGTGCACTCTAGTCAGGTACAACAAGAAGAGAAAACAAAACCTGGCCAAGCCGTTGATTGCATCTGGACCATGAAAGCCACTCCAAAAGCTAGGATTTGAGGTTCCTAGATTATCCAATGGAGCACTCAAATGAATCCAAGAGAGACATTGTTGCAGTCTACGATGAAAGCAGTTCTATTGAAAACCTGAAGGCCAAGTTTCGCAGCACTGTGGCCAATGATGGAATGCTTAAAACAGGAATAGGCGTGATACAAATGTGGGCAGATGAAGGTAGTCGGCTTAGCTCAAATTCTCTTTACtCAGCTCCCTGCACAGGCAGCACTGTCTTTTGCCATAGCAACATGTGCATCAATAATCCTTTAGTCTGTAATGGTGTCCAAAATTGTGTATACCCTTGGGATGAAAATCATTGTAAAGAAAAGAGAAAAGGCAGGACTATCTGAACAAATCACTGAAACTCATGGGACAGTTATTGGCATTACTTCAGAGATTGTCTTGGTCTTTCTCATTATTTCTGTTTTAGTACAAGTGAAACAGCCTCAAGAAAAGGTCATGGCTTGCAAAACTGCTTTTCATAAAACCGGGTTCCAAGAAATGTTTGATCCTCCTTATTATGAACTGTTTTCGCTAAGGGACAAAGACATTTCTGCAGATCTGGCAGACTTGTCAGAAGAACTGAACAACCACTAGAAGACGCGGCACTCCTCCACCACCTCCCAGTGCATCCATGACCACCACTGTGGGTCGCTGACCTCCAGCGTCAAACAAAGCAGGACCAACCTCAGTTCCACGGAGCTTCCTTTCCAAAATGACTTTGCACAACCACAGCCAATGAAAACATTTAATAGCACCTTCAAGAAAAGTAGTTACACTTTCAAACGGGGACACAAGTGCCCTGAACAGCCCCTAGAAGATCAAGTAATGGAGGAGATTCCTTGTGAAATTTATGTCGGGGGGAGAGAAGATTCTGCATAAGCATTCATATCCATTGAATTCTAATCTTCTGCTAAAGGTGATGTGAATTCTTAAGTGTGTACATATGCAGCCTCCAGGGTACCATACTGTTTCCAGCAGCCAACCCTTTTCTCCCGCCACAACTACGAAGACCTTAATTCACCATTAACCTATTATATGGTGATGTTTTTATTCTCTCAGGCAGTCTATGTATGTTAAACCAATCAAGGAACTTACTGTATTCAGTGGAAACAATAATCATCATCTATTGCTTGGTGTCATAAAGCACCACCAGTTAAAGAGCATTGGAAGAGGTGGTTGGATGGAGCCAGGCTTGGGCTGCCTATTAGTTTTAGCAAGGGGAATACTGCTCTTAACGATACAGCTCTGTCAATATTCTGATCCCACAATAAACTT
>NM_018092.5
ACTTcagtggatcccgcgccggggccgcgggcggagctgcctgccggtcccgcgccgcgcgtccgcactcctcggccctcgggcggtcgatgggacggggcgccgcggagcaggaggcggcgcccgtcggggtgctcgggccgcgcgggagcccactgtggggctcgggcatggcgggccgcaggacctgagctctcctcaggggagcggggaggcagctgctggccggcgatggggacggagtggggccgtcgccgccgcgccgagccgtgagcgccgagccaccgccgccgctacctcagcccttcgcgaagcgccgggcagctcgggaacatggccctggagcggctctgctcggtcctcaaagTGTTGTTAATAACAGTACTGGTAGTGGAAGGGATTGCCGTGGCCCAAAAAACCCAAGATGGACAAAATATTGGAATCAAGCATATTCCTGCAACCCAGTGTGGCATTTGGGTTCGAACCAGCAATGGAGGTCATTTTGCTTCGCCAAATTATCCTGACTCATATCCACCAAACAAGGAGTGTATCTACATTTTGGAAGCTGCTCCACGTCAAAGAATAGAGTTGACCTTTGATGAACATTATTATATAGAACCATCATTTGAGTGTCGGTTTGATCACTTGGAAGTTCGAGATGGGCCATTTGGTTTCTCTCCTCTTATAGATCGTTACTGTGGCGTGAAAAGCCCTCCATTAATTAGATCAACAGGGAGATTCATGTGGATTAAGTTTAGTTCTGATGAAGAGCTTGAAGGACTGGGATTTCGAGCAAAATATTCATTTATTCCAGATCCAGACTTTACTTACCTAGGAGGTATTTTAAATCCCATTCCAGATTGTCAGTTCGAGCTCTCGGGAGCTGATGGAATAGTGCGCTCTAGTCAGGTAGAACAAGAGGAGAAAACAAAACCAGGCCAAGCCGTTGATTGCATCTGGACCATTAAAGCCACTCCAAAAGCTAAGATTTATTTGAGGTTCCTAGATTATCAAATGGAGCACTCAAATGAATGCAAGAGAAACTTCGTTGCAGTCTATGATGGAAGCAGTTCTATTGAAAACCTGAAGGCCAAGTTTTGCAGCACTGTGGCCAATGATGTAATGCTTAAAACAGGAATTGGAGTGATTCGAATGTGGGCAGATGAAGGTAGTCGGCTTAGCAGGTTTCGAATGCTCTTTACTTCCTTTGTGGAGCCTCCCTGCACAAGCAGCACTTTCTTTTGCCATAGCAACATGTGCATCAATAATTCTTTAGTCTGTAATGGTGTCCAAAATTGTGCATACCCTTGGGATGAAAATCATTGTAAAGAAAAGAAAAAAGCAGGAGTATTTGAACAAATCACTAAGACTCATGGAACAATTATTGGCATTACTTCAGGGATTGTCTTGGTCCTTCTCATTATTTCTATTTTAGTACAAGTGAAACAGCCTCGAAAAAAGGTCATGGCTTGCAAAACCGCTTTTAATAAAACCGGGTTCCAAGAAGTGTTTGATCCTCCTCATTATGAACTGTTTTCACTAAGGGACAAAGAGATTTCTGCAGACCTGGCAGACTTGTCGGAAGAATTGGACAACTACCAGAAGATGCGGCGCTCCTCCACCGCCTCCCGCTGCATCCACGACCACCACTGTGGGTCGCAGGCCTCCAGCGTCAAACAAAGCAGGACCAACCTCAGTTCCATGGAACTTCCTTTCCGAAATGACTTTGCACAACCACAGCCAATGAAAACATTTAATAGCACCTTCAAGAAAAGTAGTTACACTTTCAAACAGGGACATGAGTGCCCTGAGCAGGCCCTGGAAGACCGAGTAATGGAGGAGATTCCCTGTGAAATTTATGTCAGGGGGCGAGAAGATTCTGCACAAGCATCCATATCCATTGACTTCTAATCTTCTGCTAATGGTGATGTGAATTCTTAGGGTGTGTACGTACGCAGCCTCCAGGGCACCATACTGTTTCCAGCAGCCAACCCTTTTCTCCCATCACAACTACGAAGACCTTGATTTACCGTTAACCTATTGTATGGTGATGTTTTTATTCTCTCAGGCAGTCTATATATGTTAAACCAATCAAGGAACTTACTCTATTCAGTGGAAACAATAATCATCTCTATTGCTTGGTGTCATTTATAGGAAGCACTGCCAGTTAAAGAGCATTAGAAGAGGTGGTTGGATGGAGCCAGGCTCAGGCTGCCTCTTCGTTTTAGCAACAAGAAGACTGCTCTTGACTGATAACAGCTCTGTCAATATTTTGATGCCACAATAAACTTGATTTTTCTTTACATTCCTTTTATTTTTCCTTTCTCTAAATTTAATTTGTTTTATAAGCCTATCGTTTTACCATTTCATTTTCTTACATAAGTACAAGTGGTTAATGTACCACATACTTCAGTATAGGCATTTGTTCTTGAGTGTGTCAAAATACAGCTAGTTACTGTGCCAATTAAGACCCAGTTGTATTTCACCCATCTGTTTCTTCTTGGCTAATCTCTGTACTTCTGCCTTTTAATTACTGGGCCCTTATTCCTTATTTTCTGTGAGAAATAATAGATGATATGATTTATTACCTTTCAATTATATTTTTCTCAGTTATACTAGAAAATTTCATAATCCTGGGATATATGTACCATTGTCAGCTATGACTAAAAATTTGAAAAAGATAAAAATTTCTAGCAAGCCTTTGAAGTTTACCAAGTATAGTCACATTCAGTGACAGCCCATTCATTCCAGTAAAGAATCATTTCATTCACTTTGGGAGAGGCCTATAATTACATTTATTTGCAATGTTTCTCTTCGCTAGATTGTTACATAGCTCCCATTCTGTTGGTTTTGCTTACAGCATATGGTAACCAAGGTTAGATGCCAGTTAAAATTCCTTAGAAATTGGATGAGCCTTGAGATTGCTTCTTAACTGGGACATGACATTTTTCTAGCTCTTATCAAGAATAACAACTTCCACTTTTTTTTAAACTGCACTTTTGACTTTTTTTATGGTATAAAAACAATAATTTATAAACATAAAAGCTCATTGTGTTTTTTAGACTTTTGATATTATTTGATACTGTACAAACTTTATTAAATCAAGATGAAAGACCTACAGGACAGATTCCTTTCAGTGTTCACATCAGTGGCTTTGTATGCAAATATGCTGTGTTGGACCTGGACGCTATAACTTATTGTAAAGACCTTGGAAATGTGGACATAAGCTCTTTCTTTCCTTTTGTTACTGTATTTAGTTTGTGATAAATTTTTCACTGTGTGATATTTATGCTCTAAATCACTACACAAATCCCATATTAAAATATACATTGTACCTGACCCTTTAATCATGTTATTTATGCCACCAAGGTTGTGGATCTTAAGGTATGTATGGAAAGGAACTCATTTATCAAATTGTAAGTAATACAGACATGCCATTTAAAAGAGGTAAATTCTTGTTTTCTATATTTTGTTAGTAAATTCTCAATGAAATAAGTTGAAGTTTCACTGGATTTCATTAACTTTTAAATATTACATATATGTGTTTTCTCAGATTAGTGAAAATTGTGACCTTAAATTTAATACACATATACTGCCTCAGAGTGCTTTCTTGTATCAAAATTTTTGTTTTTTAAAAAAGTAGATAATATTTAGGAGACAGAAAAACCTATACATAATGTATTCATGATTTAAATTTTTTTAAGTCAGCCTAGTTTCTTGTTTTAAAAATATAACGTGGAAACATGAAAAGACTTGATGCATATAATATTCAATGAACTAATACCAGAGACAGCTAAGTTTTTTCAGTAGTTATGCTGAATAAGCATTTTAGTAGGTAACTTACACCAGCTAACATTTGAACAGCATAATAAATACTTAATATAACAACAACTATGATCTTATGATGATAAAAGGGAAGTTAGCATATTTTCTATGTAAAATTATTCATTTTTTAAAATAGCTGTTAAACCTATATTTAATCTTTAGATTATAATAGCAAATAATACAGTATGCTAAACTATAGTCACTTGTAACTACATTTTTGTTTTTGAAATTTGATTTCTATTTATAAGGTCTTGAAGAGGCCTACAAAATACAGAGCCTTTAAAGAAGACATAACAGTAAAATAGAAGTACACAGTTTTATACGAGTCAATGTAGCAAGTAACATTTAGACAGTAAGTTTGGTTCTGAATTTTCTGGCTGCTAAAACACTTTTTGCTTTTCACAGTAAAAAAACTTATGTGCAGAGGCTAATTTCCTCTTGAACTACAGCATGAGGGTCTGTATATAGGAACATTTCTTCAGAATGTAAAAAAGATGCAAAATGGAGACAGAGGTTATAATGGTGCTTCTTAACCCAGTGAAGGCACAACTTAATGTCGTCTAGGAACATTGGTTTAGGGTCAGTCTGTATTTTCAGGGATAGAACTAAAGAACCAGATGATCAATAGCTAAGCCAGCCTTAGCCTGTCACATGTTATACACCTTCATTGAATCATAGATGGGCATTAGATCTCATTTATTTATTAAACTTCTCTATGCTTTTGGAAGAGGTAAGAATGGAACTAATAAATCTTAGGCATTATTGCCAGAATAATGCTAATTGCTGTATATACAGCCTTTAATCTTTGAGATCAGTGAGAAAACTTTATAAATTGCTTACTAAAATGAAAGCCATAAAATTTAATAACAGAAGACATGAAATTTAGCAATCTTGTGGAATTCATTACACAGTATTAACTGTCACGCAGGGTACCCCACACAGTGTCCCAGTGTTGAACACAAAATGCAAATCTGGAAGGGATAAATATCTTCAATTCAGAAACAGCATTAAGTATACCTGTATAATACTGTCACCATTATCTTCCATCTGCAATTCACCGCATCATCCCCCAAATGCCCACAGATCTATTGCAGGAAACCTACTAATCCCAACATCTAAAGCATGTAGGAATAAGATGTGATATTCCTTTTGTGTGTGGGGAGAGTGTCAATCTAAACGTTTAACAAAAGGCAAAGAATGTTCACATTTCACATCACAAAAGAGATTTCAAAGACTCCTTTAACCCGACAGCGCTTATGTCAGTGTCTTTGTCATGTTTCATAGAATTGTTAGACTTTAAAAGAACCTCCTGAAAGTCTGCCTCTGAACATTTGTATGGTTCTGCCAATGTCTGATGAGAAGAATGCTTCCCTGTTTGAGGAGTGTGTTCACTGATGAGAGGGGACGGGAGAAGCCTGGTTGTGATTTCAGGAATAATTCTCAAAGGAGATTATACTCTTATTGCAAAATGGGGTCTGCTATATATTGTTCATGTCACTTTATTGCAAGTGACATGAATTATATGACATTAAAAATAATATGCCTTGAATCACACTGATTAGACCCAGAAGGATCATTGAGTTTTTGGTGGTTTTAAAGATCCAAGAAAGACCTATCTAGCCCAAGTGTATGAATGAGAAGACTGAAGCCCACAGAAGTGAACTCAGCACCAGTGTCTCAAGAACCCCAGTACTCTGGtttttttcttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgctattctcctgcctcagtctcccaagtagctgggactacaggcgcccgacaccatgcccggctaatttcttgtatttttagtagagacggggtttcaccgtgttagccaggatagtctcaatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggccTTCTGtttttgtttttctgtttttttgttttttgagacagagtctcgctctgtcacccaggctagagtgcagtggcgtgatctcggctcactgcaagctccgcctcccgggttcatgccattctcctgtctcagcctctcgagtagctgggactacaggcgcccgccaccatgcccggctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggagtgagccaaggcgcccagccCAGCTGTACGTTTTAAAAGTCAAGCACTTCTGTTTAGCAGCCCATGTAAGCTTGTCAATCATTCTGAATTGAAATGTAATTTATTCTGTAATTTCTTCAATGCATTATATTTCCCCTTTTCTTTAAATGTATGTAACATTGTGTTCTACAGTTTTGCTGCCATGATTCCTTGGCACCGTGAATTCTTACTAAGCAATGTTTGTTAACAGTATACAGGCTCGATACTAGGCAGGAAGAGCTCCTGTGTTCTTGCTTTTTTGATCTTTTTTAAATCTAAAGGAGACGTGTATTCTAGAAATTAAATATTTGTGTGCCATATCTCTTGAGTTTTGGAGAATGATTGGAGTTTGAGTTACTGTAAATAACAAGATTATCTTGGATATTTTAGTTTTCTGCAAAATCACTTATGTTTTATATACCTCTGCTAATAATTCAAAACTCTGAATTTGCTTTACTTTAACTTTTTAAAAATGTATTTTTGCAATTGGTTTAATGACTACCAAAGCCTAAAAAGCTAATGACTAGGGTGCATGTTTAGTATGCACTGTCTAGTGTAAGCTTTTTAAAAGCAGTAGATTTTTATTAGAGATGAACTTCCAGGCCATATGAGAATATGCTTAATCCTAGATTTGGCATTTTATAGAAAAGAATTTTGACTCTTGAACTAGAATTAAAAACTTGTTCTGATTTCCTTGCTTGCCTCAATTTCTAAAGTCTAGAAGTGGCAAATAATTTAGATCACTTATACCAACAGAATCTGTATTTCCTTCCGGGGCAAAGTTGGCATTTCCTATCCACTAGCTTCCAAAATACAATAATCCTAGTTATGATAAGGGCAACTTTATTTTATTACACTTAGAACCATTTTATGTTTTCAAATTCATTAATCTTCAAGTGAAGATGAACTAAAGAAAAAAATGCGTTTTGTCCCAGGTTGCCTGCAGGTTGCAGTCTGCTGCATCCGGTCACTGAAGAGGCAGTGAGGACTGTCACAGAGTGGGCTGGAGAGCCAAGCTGTTCTTTCGGGGTGCACAGTGCACCAGCCATAACACAGCTTAGAAACATGGATGAGTATACCTCAAGACAGGTGAACACGGAGTGGGGAGCAAAAGAAGGCAGAAACTCCTCTGAGTTTCACAAGCATCAGGCACAGATCAGGGCACAGAGGAAGAAGAAAGAAGGTTTACCACTGGTCTGTCTCTGTAAATTGTTACAGAGCAATTTTACTTTGTGTTATTTAGGATCAAGAAACAAGTGTTATTTAAAAGTTCTCTTACCCTCCAACCTTTGTCATACT

Publications

PMID - Link Title