Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name PPM1AP1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:15805924-15807305  UCSC
Coordinates (T2T) chr8:16072224-16073604  UCSC
Coordinates (hg19) chr8:15663433-15664814  UCSC
Strand -
Parental Sequence XM_017021387.1
Parental seq. overlap 1260 bp
Parental seq. overlap (%) 15.2%
Genomic Region Intergenic
Retrocopy Summary PPM1AP1, located on chr8:15805924-15807305, is a retrocopy of the parental gene PPM1A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PPM1A
Full Name protein phosphatase, Mg2+/Mn2+ dependent 1A
Also known as PP2C-ALPHA|PP2CA|PP2Calpha
Coordinate chr14:60245750-60299087
Strand +
Gene summary The protein encoded by this gene is a member of the PP2C family of Ser/Thr protein phosphatases. PP2C family members are known to be negative regulators of cell stress response pathways. This phosphatase dephosphorylates, and negatively regulates the activities of, MAP kinases and MAP kinase kinases. It has been shown to inhibit the activation of p38 and JNK kinase cascades induced by environmental stresses. This phosphatase can also dephosphorylate cyclin-dependent kinases, and thus may be involved in cell cycle control. Overexpression of this phosphatase is reported to activate the expression of the tumor suppressor gene TP53/p53, which leads to G2/M cell cycle arrest and apoptosis. Three alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes PPM1AP1
Bonobo Pan paniscus PPM1AP1
Gorilla Gorilla gorilla PPM1AP1
Orangutan Pongo abelii PPM1AP1
Gibbon Nomascus leucogenys PPM1AP1
Green monkey Chlorocebus sabaeus PPM1AP1
Crab-eating macaque Macaca fascicularis PPM1AP1
Rhesus Macaca mulatta PPM1AP1
Baboon Papio anubis PPM1AP1
Golden snub-nosed monkey Rhinopithecus roxellana PPM1AP1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PPM1AP1
GAGACCTACAGGATTATGACATAATGGGACCATCTTTAGACAAGCAAAGATGGAAGAGCATAATGCCTGGGGGTGGGGTAATTAGTTGCGATACGAGCTACGCAGCATGCAAGGTTGACGTATTGAAATGGAGGATGCACATACGGCTGTGATTGCTTTGCCAAGTGGACTTGAAAGGTGGTCATTCTTTGCTGTGTATAACGGGCATCCTGGTTCTCAGGTTGCCAAATACTGCTGTGAGCATTTGTTAGATCACATCGCCGATAACCAGGATTTACAGGGTCTGCAGGAGCACCTTCTTTGGAAAATGTAAAGAATGGAATCAGAACAGGTTTCCTGGAGATTGATGAACACGAGAGTTATGTCAGAGAAGAAACATGGTGCAGATAGAAGTGGGTCAACAGATGTAAGCGTCTTACTTTCTCCCCAACATAATTATTTCATTAACTATGAAGACTCTAGACGTTTACTTTGTAGGAACAGGAAAGTTCATTTCTTCACAAATTGCAAATCCGCTAGAAAAAGAATGAATTCAGAATGCAGGTGGCTCTGTAATGCTTTAGCATGTGAAAGCCTCTCTGGCTGTATCCAAAGCCCTTGGGGATTTTGATTACAAATGTATCCATGGGAAAGGTCCTACTGGGCAGCTTGTCTCACCAGAGCCTGAAGTCCATGACACTGAAAGATCTGAAGAAGATGATCACTTCATTATCCTTGCATGTGATAGTATCTGGGATGTTATGGGAAATGAAGAGCTCTGTGATTTTGTAAGATCCAGGCTTGAAGTCACTGATGACCCTGAGAAAGTTTACAATGAAATAGTCGACACCTGTTTGCATAAGGGAAGTCAAGACAACATGTGTGTGATTTTTTTCTCTGGTTTCCAAATGCACCCAAAGTATCACCAGAAGCAGCGAAGAAGGAGGCAGAGTTGGGCAAGTACCTGGAATGCAGAGTAGAAGAAATCATAAAGAAGCAGGGGGAAGGTGTCCCTGACTTAGTCCATGTGGTGTACACATTAGCCAATGAGAACATCCCCAGACTGCCACCTGGAGGTGAATTGGCAAACAAGCAAAATGTTATTGAAGCCATTTATAAAAGACGGAATCTTTATAAAAATGATGACAGTGACTCCACATCAACTGATGCTATGTGCTAAAACTGCTCATCTAGCCATGGAGTTTACCTTCACCTCCAAAGCTGAGTACAGCTCAGCTTTGTTGAACCTTTTAACATCCGTCCTCAACTTTAAGGAAGGGGATATGACATGGGTAAGAATGATCACACCAGAGAACTTCAGCAGTACAACTTCTGGCTCATAACTGATTTTTTGTTTTTGTAAATTTGACACTTAAGTAAACATGATTTCAAACCATAATTCA
>XM_017021387.1
ggcgCTAGGGACGGGAGCGCGCGCGGGAGCTAGAGAGCAGTGGTCTCGGCGCTCGTCCGGCCCGCAGCTTCGGGTCCTCAGGCGGCTGTTGCTCCGGAACGGGTGGTTGGGGAGGGGGGGGTGGGGGGACTCTAGACAGCTGAGGCGCGAAAGCGATGAGTCCTCGGCTCTTCCTCCTCCTTCTCCGGGACCCGCTCTCTGCCTCCCTCTCCAACGCCCGGATGATCTGAGCCGCGAGGGCGCCGACAGCCGGGGGCCCGGACGCAGCCCGGCTCCTCCCCTCCTCCGCCCCTTCCCCAGCCTGACCTGGCCCGCCGCTGCAGCGGTGACCCCTCCCCCGGCTGCCGCCGTCGCCGCCGCGGTGACCCCCTCCCCGGCTGCCGCCGCCGCCGCCTCGGCCGACCAGGGACCTGCCCGCCTGCGGCTGCTCCGGAAATAATTTGTTGATCCATGCGGTTTCATTGCTACTGCGGAAACTTATAGTTGGCTGCTTCACCAGGACTCTACAAATTGCTCAGAACCCAAGGAGACCTAGAGGATCAAGACATAATGGGAGCATTTTTAGACAAGCCAAAGATGGAAAAGCATAATGCCCAGGGGCAGGGTAATGGGTTGCGATATGGGCTAAGCAGCATGCAAGGCTGGCGTGTTGAAATGGAGGATGCACATACGGCTGTGATCGGTTTGCCAAGTGGACTTGAATCGTGGTCATTCTTTGCTGTGTATGATGGGCATGCTGGTTCTCAGGTTGCCAAATACTGCTGTGAGCATTTGTTAGATCACATCACCAATAACCAGGATTTTAAAGGGTCTGCAGGAGCACCTTCTGTGGAAAATGTAAAGAATGGAATCAGAACAGGTTTTCTGGAGATTGATGAACACATGAGAGTTATGTCAGAGAAGAAACATGGTGCAGATAGAAGTGGGTCAACAGCTGTAGGTGTCTTAATTTCTCCCCAACATACTTATTTCATTAACTGTGGAGACTCAAGAGGTTTACTTTGTAGGAACAGGAAAGTTCATTTCTTCACACAAGATCACAAACCAAGTAATCCGCTGGAGAAAGAACGAATTCAGAATGCAGGTGGCTCTGTAATGATTCAGCGTGTGAATGGCTCTCTGGCTGTATCGAGGGCCCTTGGGGATTTTGATTACAAATGTGTCCATGGAAAAGGTCCTACTGAGCAGCTTGTCTCACCAGAGCCTGAAGTCCATGATATTGAAAGATCTGAAGAAGATGATCAGTTCATTATCCTTGCATGTGATGGTATCTGGGATGTTATGGGAAATGAAGAGCTCTGTGATTTTGTAAGATCCAGACTTGAAGTCACTGATGACCTTGAGAAAGTTTGCAATGAAGTAGTCGACACCTGTTTGTATAAGGGAAGTCGAGACAACATGAGTGTGATTTTGATCTGTTTTCCAAATGCACCCAAAGTATCGCCAGAAGCAGTGAAGAAGGAGGCAGAGTTGGACAAGTACCTGGAATGCAGAGTAGAAGAAATCATAAAGAAGCAGGGGGAAGGCGTCCCCGACTTAGTCCATGTGATGCGCACATTAGCGAGTGAGAACATCCCCAGCCTCCCACCAGGGGGTGAATTGGCAAGCAAGAGGAATGTTATTGAAGCCGTTTACAATAGACTGAATCCTTACAAAAATGACGACACTGACTCTACATCAACAGATGATATGTGGTAAAACTGCTCATCTAGCCATGGAGTTTACCTTCACCTCCAAAGGAGAGTACAGCTCAACTTTGTTGAAACTTTTAACATCCATCCTCAACTTTAAGGAAGGGGATATGACATGGGTGAGAATGATTACATCAGAGAACTTCAGCAGTACAACAGCTAGCCCAGAACTGAtttttttttttttttttGTAAATTTGAGACTTATGTAAGCGTGATTTCAAACCATAATTCGTGTTGTAAATCAGACTCCAGCAATTTTTGTTGTATGATTTTGTTTTTTTGTAAAGTGTAATTGTCCTTGTACAAAATGCTCATATTTAATTATGAACTGCTTTAAATCACTATCAAAGTTACAAGAAATGTTTGGCTTATTGTGTGATGCAACAGATATATAGCCCTTTCAAGTCATGTTGTGTTTGGACTTGGGGTTGGAACAGGGAGAGCAGCAGCCATGTCAGCTACACGCTCAAATGTGCAGATGATTATGGAAAATAACCTCAAAATCTTACAAAGCTGAACATCCAAGGAGTTATTGAAAACTATCTTAAATGTTCTTGGTAGGGGAGTTGGCATTGTTGATAAAGCCAGTCCCTTCATTTAACTGTCTTTCAGGATGTTCCTTCGTTGTTTCCATGAGTATTGCAGGTAATAATACAGTGTATTCATAAGAATCTCAATCTTGGGGCTAAATGCCTTGTTTCTTTGCACCTCTTTTCAAGTCCTTACATTTAATTACTAATTGATAAGCAGCAGCTTCCTACATATAGTAGGAAACTGCCACATTTTTGCTATCATGATTGGCTGGGCCTGCTGCTGTTCCTAGTAAGATATTCTGAATTCCATTTTATCAATAAAGCTTGATTTAACAAACAAGAAACTTAATCATGTATGTGTAATTCCTCTTTTACCCTGGCCTTTTAAAACACTGTGCCGTTGTAATGAGACGTTTCTCATAGGGAAAGATGTTAGTCTCTTTTAATTGGACAACACTGTCACTCAAGGCATAGATGAAACTTTCCTTCCATTAGAAAGACTAAAAGATTTAATTCTTGGTTGTACCTTAATCTATTTTTTAAATAGGTTTCTTTCAGGCTGCTTATTTTTCATTAAGATGTGTATCAGCTTGGATTTGCCTACTGTTTAATTAAAATATTTATTGTCAAAGTTTGACAATCTAACACTCTATGGTAGGGgtgtgtgtgtgtgtgtttgtgagtgtgtgtttgcctgtgATTTTTAATTGGCCCATGTCTTTAGAATCCAAGTGGTTAAGATGTATTTGTGATTTGAAATATAGCATGTTGATAATATTTAGCTGTTGGCCTTTACAAATAACTTTCAAAGCTTAAGGAATTGTAGATATAAAAATAACCTAATTTAATTTAGGCTTAAATTCCTCTGATTAAGCATGTGAAAGTAAGTTTTAAAATCTGTCGCATTGAAAAGATTACTGTTCCGTGCCCTTCTGTATTTTTGTCTCTTTAGGTTGAATATTGTATTTATCACCATGTAATCATTCAGTAGGCAGATTCCCACTAGAAAACTGTTGAAATGTAAGACTAAAATACAACATTGAATACAAAATCAAAATTTTGTGTATAAAAACCAGTATAGTCCATTTTGTTATATTTGTTTTTTCCCTAACTTGGAAATATACATATTTGTATATATAGCCTTAAAATTAATGTAAAGTTAGGGGAGTAGTGGGGAAAGTAATGTGAAATGTCTCAGATTTAAGTAGTTAAATACCAGCAAAATCTTTTCATTATCCCTCTTATTTTGTGAGGTGattaaatgtaacttaattgtatttaatttatatcttattCCAGCATGAATGAGGAAAAACTGAAGTACTATTTATATTTAGAAATTCATATCAGTTGAAATTACAGAACCAATTCCATACTTACAATAAATACTTAATGTCTAAATCTGTGGTAGAGTGCGAAGTATGATAATGTTCTAAGTTATGGCTTTGCAAGCATCTAAATGTGCATTTAATGAATACCAGTGCTTCTAGTATAGACTAATTACCAGACATACTGGTACTGAAAGCTAAATCCCTATTATAACAAACCAGTTCCTTAATATTTTAAGTAGACTGACAACTTTAGTTCCAGAAATTGCAAAACTTTGAACTGGACTGTGTAATCTTTTGAGATGCAAAACTTAAGTCACAAGTAGAGTATGTGATGGAAAGCTGTATTTCAAACCATAACAGCATATTTAGAGCCTTTTTTTTTTGAGTCTTTAAACAAGAGAAAATTAAAATATTCCTGTCAAAATTATTAGTATTGAAATTAGGCTTGGACACGAGAGAGAACCGTATTTGAGTGATGTGAGAAGACTAAATCTTTTCCACATGAGTCAGCACTGCCATACTAATAATTTTTTTACTATAAAAATACAGGAAGGAAGTATACATTATAACAGCAGACTGTGTGTGTTCCTGATTCCTGGAGGTAATAGTGGGGGGAAACCAACCATACTTTTTAAAGGCACTTTTGCACCTCTATTGTGCACTTCATTCTTGTACCACTTAAATTCTTCACCCCCATCCCCTTTTTTTGTGCTAATTAGCATCTCAGGGCAATGCCTCAAAAATGTTTGATGTGTTCTGTTCTTTGGAGGGAAAAAGTTCTTATGTGATGATAATATAGTACTCAAAATATACTTTTATCATTTAAATGTCTTATTTGCTGCTATGAATAGGAAATAACATTTTGTATAGCAGGCTCTGTTTTACCCTAACATTAAAAAATTTCACTGATCTTTCTTTCATTAACAGGGTAGAATCTCCTAATTTCCACTTTCTTGGGAATATACTTTTATAGACAATAGAAGCAGTTCTCAATATTAGCATATACTTTAAAAAATCAAAGTGATAACTTAATTCAGCTTTGGAAGTATCTCAAACATATTTTTACTTTATAGTGCATTAACTTGCTTCTAGAGTACTTAATGCAACTGCTCTAGCCACTTAATTTTTTATACTAATCTCAACATTAAGAAATTTGGATTAAGTAATAAATTAGTTATGTAATTCAAGTAATCTGAATTACAGCAGTACTTTTAGTGATCATTCATAGGACTATATATTAACCCAGCTAATAACTCAGTTTTTTTACAAAATGTTTCGAGTATTATTGGTAAAACACTGTTCTAGGCTAAGCACATTGGGACTGTAAAGAAATGAGTAGATCCTTGGCTTCAAGTTTACATCTGGACAATTTATAATCTAGTGTATGTTAGTATTATAACTGGATCACTCATCAAAAAATATATATATatatctattgcccacctgctatctaccaggtacttagctgatcaaggcaggcccctgccctaaagACCTTGTTTATACTTCCTTTACTCACCTGAAAACTGTTCTCCAGTTTATTTTCTTCTCTCTAAAGTTAAAGAGTAATTCAGAAGAAAATTTTGCTTAGCATAAGAATAAAATTGGACTGAAGAGGCTTAAGCCCATTCAGTATCCTTGATTGCATTTATCCAACGGCCTTTATTCTTCCTGCTGACAGCAGTAACTCAGAGGAATAGGTAGTAGATTTCTGAAAATTATCCAGCCATGGAAATGTAGGTGGGGTTTGAGTTTAAGGCATTTAAAAATGTAAATATCTCTAGCTAAATTTATCTTAAGTAGAACTCTGTGTTTTTGTAACACACTGCCAGTGTTAATATCAAATTTTAGCCAAATTATTACTATGTGTTTTAATATTTTAAAATAATTTCACTGCCCATCTTTACTGGACAAACTCATTTGGAGTTCAACTTGTGATTTCTGAAAGAACTGATGAAATTGGGTACTGCTTTTTTTCTCCATTTTTCGTTTTGTTTTAATTTTGAATTTCATGGTATATACTTTTAGTTCAAACTCAGCTGTTTGTACAGTATTGTATTAGGATTTGGTATTAGAAAAGATGTGTAAATATCTTAGTATATAATTGTTTCTCATTTGAGGTTTTTCTTCTAAGGGACCTTAAAGAGTTTTATATACTTTTGCTCACAGAAACTGCTGGTGAGATTACCATTTTTTGAGTATCTAGTCTTCTAGTTTTTCTTTTAGGCATTAGGAAGCCTTCTTTAGAGTTCAAAATTTTAGAAGCCTAATTTGCTCTTACTTCCTTCAATTATGTGCCATGTGTTTTGGTTTGTATATGTTTTAAATTGTATATTTCCTTGGAATATGCTTGAAATATTTAAGAATACATTTTCAAAATGTATAATACTGTATTGTTTTGTTGATCAGAATAATAAGTCTCAGTTAAATGTTTGTTATTACTGATAGTCAAAATGCTCAATAGAAATGATGAGAGGCATTGGTTCCAATTCATTGTCAAATGAACGTTTTCTAATTTTGTTCACAGATTCTTTCCCTTTCGATTGTTCTGTATGTTAAGATAGTGGCTTCTGCTCTCACTGTTTTCCTATTTATATTACTAGCAGGTAGGAGTGCTAATTAGAAAAACTTAGATGGTATTGAAATTACAGTTGACAACTTATATTTTTATGAGATGGAGAAAAAAGATTAAGTTGATATAACAACAAAGTGGACTTTTTTTCTTCCTTATCCTGCACGAAATATTGCCCTTGTTTCCTCTACTTTCCTCTTGGTGTTTTCTCTTTTTTTCAAACAGAAACAGGCCAATTCCATTTTCTTGAGCAAGAAAGCTTAGTGTGTTACTTCATCAAGGCCAGCTAATACTGTGTTAAACCGGGCTGAAAATGAGAAAACTTGGGAGATGGAGGAATGGGGAAATGGCAGTGGGATAGGTAGGGAAGGATTACTCTTAATTGTTTTAAAAGCCATAGGAAAGTCTTCCTTGTACGTGGCTGTAAATTTATAAGAACTATTGTGTCACATAAACCAACAAGAATGAACCTTTGCTGCTTCAGATAATTTGATTTTTCCAGCAAGGAAATTAATAAGTTACTGATTCTTCAGCATAGAAACAACTGAGAAGAATTAATGCAATGTTTCTTCACTAGAAAACCCAACCCTTCATTTCTTTTCATTGCTCCAAAACCCAGTTTTCAACTAATGGTTTTCTCATTAAACTAAATGTTTAGAAAAGTTGTTTAGAGTTTTTCTTTTTCTTTTACATAGTCCTCCTGATCCAGTATAAGACTATTTAGTAACGTGCATTTGTATGGTACTATCTAAAGTAAGTTAGATTGATGTAAGAGATCGGGTAGCTGCGGAACAAAATTAGTTATATCCTAATTAGGTACAGTGAATGACACAAAATCATTTTAGcaatgcttcttaaccttttggggtcacaggcgttttgagactgatgaatcctagggacttatttacccaggaaaatgcgtatataacatacatatctccctaaagtttacaatattgtagtggttcatgggccccctggttaagagcccattcTAAAGTACAATAGGGCATCATCCCTTTTCCTGCAAAGCCCAAAAGTATATTTCTAGGGCATGAAAATAACTTGAGTCTATTTTAAGGAATTGTTTCACTCTAGAGGTAGATAGGGGACCTGGCTAGAATCTGACATTAAAATATACTTTTTAAAAAATATTATATTTGGGGTGGGGAAAGTGATTAAAAGGTGAAAAAAAAACATAGTATTCAGAAGTTTTGGAGGTTAATGTCTTTCTCTAAGATTTGCCACTTTAGAAATTCAACAGAAAAGAGGTAAAACAGAAATGGAATGTATCTGGAACATTTTTGGCCTCCATAGTGCAGATATACTATATTAACAAGTAATACATTTATTTACCTGTCAGATCTCCAGGTTTTAAGATTTTGAGCTTTCTAGTATTAGGATTCATTAAATGTTCAATTCATTTCATATTCTAAGGAATTAGGTTATTTACTTACTAATTCAGGATGTTAAAATAACATCCAAGTCGGACAACCACCACCAATGCACACAGTTAATGAGATTTCTAAAATATAATAAGTACAATGTAACAAACGTATAGAATTTTGCATTTGTTGCCAAAATTAGATGTTTAATGACAGCTTATTTAATTCCCATTTGTGGGACTTCTGGAACATAGAAACCATTATCTTACCTGGTTATCCCTTGACTAAATAGCATATCTGCAGGAAAATATCTTGTTTGTAGTGATATGCCCCAATAGTGATTGATTTCACTCTTGAAATGAGTTATATCACTTAATTTGTATAAATGTTATGAGTGGAGAGACATGTACATGTTAAAAGCATGTTGCATTATATATTCATTTTTTAAACTCTATAAATGTTAAGAATAATATAATTGCAGAAATATTTTTCTTAAATACAATGTGTAACAAAATTCTCCGTAGCAACTCACCCACTTTGCAGTTTATGTGATCCACACTTTTAAAGAAATTCCATAAATGTATATTTTGTATTATGTATTATTTCCTGGTCCAAAGAAAATATGTGAATTCAGTTCTAACTTTAAGAATGTACTGTTTGTTTTCAAGTTCATTGAAAAATTGCATTCAGCCTGCGAATGGTTGCAGATTGTATGTTAGATGAAAAGTAGAAATAATTTCTAGTTTGGAAAACTGGTGCCACTAAATAAACAGGCAATTACATAA

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