Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KCTD9P6
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:31218195-31221150  UCSC
Coordinates (T2T) chr8:31499349-31502304  UCSC
Coordinates (hg19) chr8:31075711-31078666  UCSC
Strand -
Parental Sequence NM_017634.4
Parental seq. overlap 2508 bp
Parental seq. overlap (%) 68.6%
Genomic Region Intergenic
Retrocopy Summary KCTD9P6, located on chr8:31218195-31221150, is a retrocopy of the parental gene KCTD9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KCTD9
Full Name potassium channel tetramerization domain containing 9
Also known as BTBD27
Coordinate chr8:25427847-25458433
Strand -
Gene summary Enables cullin family protein binding activity; identical protein binding activity; and protein self-association. Predicted to be involved in intracellular signal transduction; protein homooligomerization; and protein ubiquitination. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes KCTD9P2
Bonobo Pan paniscus KCTD9P2
Gorilla Gorilla gorilla KCTD9P2
Orangutan Pongo abelii KCTD9P2
Gibbon Nomascus leucogenys KCTD9P2
Green monkey Chlorocebus sabaeus KCTD9P3
Crab-eating macaque Macaca fascicularis KCTD9P2
Rhesus Macaca mulatta KCTD9P2
Baboon Papio anubis KCTD9P2
Golden snub-nosed monkey Rhinopithecus roxellana KCTD9P2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KCTD9P6
TTGTAAATAATGGCATTAATTTATTGGGTGTGTTAGAAGCAGCAAGATTTTTTGAAATTTATTCATTGATTGAACACCTAGAAGTGGCAATAAAGAATTCTCAACCACCGGAGGATCATTCACCAATACCCCGAAAGGAATTTGTCCAATTTTTGCTAGCAACTCCAACCAAGTCAGAACTGCGATGCCAGGGTTTGAACTTCAGTGGTGCTGATCTTTCTTGTTTGGACCTTCGATACATTAACTTCAAAATTGCCAGTTTAAGCCGCTGCAGTCTTGCACATGCAAATCTTTGCTGTGCAAATCTTGAACGAGCTGATCTCTCTGGATCAGTGCTTGACTGTGCAAATCTCCAGGGAGTCAAGATGCTCTGTTCTAATGCAGAAGGAGCATCCCTGAAACTGTGTAATTTTGAGGATCCTTCTGCTCTTAAAGCCAATTTAGAAGGTGCTAATCTGAAAGGTGCTGATATGGAAGGAAGTCAGATGACAGGAATTAACCTGAGAGTGGCTACCTTAAAAAAATCCAAAGTTGAAGAACTGTAACTTCAGAGGAGCAACTCTGGCAGGCACTGATTTAGAGAACTGTGATCTGTCTGGGTGTGATCTTCAAGAAGCCAACCTCAGAGGGTCCAACGTGAAGGGAGCTATATTTGAAGAGATGCTGACACCATTACACATGTCACAAAGTGTCAGATGAGAATTTTAGGGGCTGGAGGAAGATGTAGAAAATGAAAATGTTTTCCTTATCACTTTTCTTTCTCTACCCACTCAGTTGTCTAGAAGAAACAACACTGTAAGGAAATTTTTTAAAAAAACATTTAGAGGATTATGCTTGTTCTCAGCGGTACATAAGAGAAAAAACTGACCTTTTTTTCCATATTCTGATTTGTAACACAAAAGCACTCATTCAATATATGTAGGGAAACTAGATGTTTCTGCCTTTTGAACGGGGTAGGGTGGTTTACCTGGTTTTATGGCCAGGAATAGTATCTATTATGTTTGCTTTTAAATAGGCATGATGTGGAAATACCATCCTGGTTTGAGAGGCATTTGAGGATTTTAATTTATGGAAAGCACAACATATGCAATTATATTTATTGAATACCTAGATGCAGTATAGATATTTAAATTGTTAAAACTTTATGAAAACTTGAAAAACATTGTTCAGGTTCATAAATAGCTTTAGTGATGCCTCCCCTCTTTAAATACCTGTCACACCGTATGAATATGGTGAGATCAGACTCCCTAAGACTCTTTTCAGGCTCATTTTCATAATGTTTACTTTTTAGGGCAAAACAGTAGCTAAATTAAAGTAATAGCCAGTTCTTACTGATTGAGACAGAGTGGAAAGAAAGACATCATTGTACATCACTGTCATTCCAAAGGTACAGTGGAACTCCGGATGGATGAAGAACTTACCTATCACTACAACACTTATAAATGAGAATTTCTCAGAATTTCATTCTAGACAAGTTCCACGCAACACCAGACCAAGCAATTCTATCTATTTACAATATTAGCCTAGTTTTCTCATACAATCATCACAAGCATAGGAAGATACTTCAAAACCAAAAAACCAAGGTCTGTCATTAATATTCATTTAATTCAAATACCAAATAGTTTATATAGGGCCAGCTTAGAAATAGATACTAAATCCAGAGCTACTGCAATCAAAGCTTATATGAATGAAGATGGTAGAGTTGCCTGTTAAAAGGCAATGTAATATAATTGCAGCTAGAACCCCACAGTTGGGAATGAGGAATTTTAAACACATTTGATTACAGCCACCAAAAAATATATATAAAGTAAAAATAAAGGCATTTGGCTGGTCCAAGATGTAATACCAATCAGTCAGCACCTGTGATTCTTTTACTTATTTTTTAGGTTTTTTTTTTTTAAACAAATTTTAGCCTAGTTTTCTCGAGTCATTACCTCTCTGCAGCAGCAGAGGAAGGGCCTGTACCTCCCTACCAGTGACCTGGTGTCCTTATTTCTACCGCAAGAGCAGGGATATTAGCTGTGTCCAAATGGGTTCTGAATTCTACAGACTCATCAACATGAGGCAAGGAATCATTGAAAAACCCGTGTCTCCTTTGGGAGAATGACATATCTTTAGTATTTATGTAGCTTATTCTTCTATATCTACATATGCAAAGCTTTCCTTAACAGTAAAGGGTACATATGCATAGTGGGAGGAGATCAGACCTTTACAAGTGAAGGAAAGCAACTTCAGAAATGAATTATTTGCTTTGCTTTATTATTTTTACCAAGACAGAGAAGTATTGTATTGAGAAATAATCTATTTTCATAATCAATATGTGCCCAAATTATATTTAAATTATTTCACTCTATATTTTCAGGAATTATAGAATGTGTTATTTATTCACTTAAAGGTACCTCTGTAGAAATAACCTAAAACTGCAGAAGGATCTGAAAGATCTAAACATAGTGTGCTTAGAAACTACAGATTTTAGATCTAACGTATACTGCATTAATAAATGATATAAAGTGTTACCAAGGGCAGGAAGGTGGCAAAGGGAGGCGAATCCGAGAGGGTAGAGGGAGGGGAAGGGCGGAAGGAGAAAAAGGTGGGAGGAGGACCAGGTGGGAGGGTGGCGGCTCACTCAGGACCCAGCAGGGGCAGCGCGATGAGGCGGGTGGCCCTGTTCCTGAATGGCAGCCCCAAGAACGGAAGATCCTCAGGCAGATTCTAAGCCTCCTGAAGGATTGTTAGGATTCCACACAGACTGGCTGACATTAAATGTTGGAGGGGCGGTACTTTACAACTACACGGAGCACTTCAGTGAATAAAGAACCTGACAGTATGCTGGTCCACATGTTTAAGGACAAAGGTGTCTGGGGAAATAAGCAAGATCATAGAGGAGCTTTCTTAATTGACCGAAGTCCTGTGTACTTTGAa
>NM_017634.4
GAGGACCGGCCGAACCTTGGGTGTGGGACAGAGTGCGTGCGTGTGGTGTGTCCCCAAGGGCAGGAAGGTGGCGAAGGGAGGCGAATCCGAGTGGGTGGAGGGAGGGGAAGGGCGGGAGGAGAAAAAGGTGGGAGGAGGACCAGGTGGGAGGGTGGCGGCTCACTCAGGACCCAGCGGGGGCAGCGCGATGAGGCGGGTGACCCTGTTCCTGAACGGCAGCCCCAAGAACGGAAAGGTGGTTGCTGTATATGGAACTTTATCTGATTTGCTTTCTGTGGCCAGCAGTAAACTCGGCATAAAAGCCACCAGTGTGTATAATGGGAAAGGTGGACTGATTGATGATATTGCTTTGATCAGGGATGATGATGTTTTGTTTGTTTGTGAAGGAGAGCCATTTATTGATCCTCAGACAGATTCTAAGCCTCCTGAGGGATTGTTAGGATTCCACACAGACTGGCTGACATTAAATGTTGGAGGGCGGTACTTTACAACTACACGGAGCACTTTAGTGAATAAAGAACCTGACAGTATGCTGGCCCACATGTTTAAGGACAAAGGTGTCTGGGGAAATAAGCAAGATCATAGAGGAGCTTTCTTAATTGACCGAAGTCCTGAGTACTTCGAACCCATTTTGAACTACTTGCGTCATGGACAGCTCATTGTAAATGATGGCATTAATTTATTGGGTGTGTTAGAAGAAGCAAGATTTTTTGGTATTGACTCATTGATTGAACACCTAGAAGTGGCAATAAAGAATTCTCAACCACCGGAGGATCATTCACCAATATCCCGAAAGGAATTTGTCCGATTTTTGCTAGCAACTCCAACCAAGTCAGAACTGCGATGCCAGGGTTTGAACTTCAGTGGTGCTGATCTTTCTCGTTTGGACCTTCGATACATTAACTTCAAAATGGCCAATTTAAGCCGCTGTAATCTTGCACATGCAAATCTTTGCTGTGCAAATCTTGAACGAGCTGATCTCTCTGGATCAGTGCTTGACTGTGCGAATCTCCAGGGAGTCAAGATGCTCTGTTCTAATGCAGAAGGAGCATCCCTGAAACTGTGTAATTTTGAGGATCCTTCTGGTCTTAAAGCCAATTTAGAAGGTGCTAATCTGAAAGGTGTGGATATGGAAGGAAGTCAGATGACAGGAATTAACCTGAGAGTGGCTACCTTAAAAAATGCAAAGTTGAAGAACTGTAACCTCAGAGGAGCAACTCTGGCAGGAACTGATTTAGAGAATTGTGATCTGTCTGGGTGTGATCTTCAAGAAGCCAACCTGAGAGGGTCCAACGTGAAGGGAGCTATATTTGAAGAGATGCTGACACCACTACACATGTCACAAAGTGTCAGATGAGAATTTTAGGGGCTGGAGGAAGATGTAAAAGATGAAAATGTTTTCCTTATCACTTTTCTTTCTCCACCCACTCAGTTGTCTAGAAGAAATAACACTGTAAGGAAATTTAAAAAAAAAACATTTAGAGGATTATGCTTGTTTTGAGTGGTGCATAAGGGAAAAAACTGACTTTTTTTCCATATTCTGATTTTTAACAGAAAAGCACTCATTTAATAGATGTAGGGAAACTAGATATTGCTGCCTTTTGAATGGGGTAGGGGGGTTTACCTGGTTTTATGACCAGGCATAGTATCTATTATATTTGCTTTTAAATAGGCATGATGTGGAAATACCATCTTGGTTTGAGATGCATTTGAGGATTTTAATTTATGGAAAGCACAACATATGCAATTATATTTATTGAATTCCTAGATGCAGTATGGATATTTAAATTGTTAAAACTTTATGAAAACTTGGAAAAGGTTGTTCAGGTTTATAAATAGCTTTAGTGATGCCTCCCCTCTTTAAATACCTGTCACACCGTATGAATATGGTGAGATCAGACTCCCTAAGACTCTTTTCAGGTTCATTTTTATAATGTTTACTTTTTAGGACAGAACAGTAGCTAAATTAAAGTAATATCCAGTTCTTACTGATTGAGACAGAGTGGAAAGAAAGACATCATTGTACATCACTGTCATTCCAAAGGTACAGTGTAACTCTGGATGGAGGAATAACTTACCTATCACTACAACACTTACAAATGAGAATTTCTCAGAATTTCATTCTAGGCAAGTTCCACTCAACACCAGATCAAGCAATTCTATCTATTTACACTATTAGCCTAGTTTTCTCATACAGTCATCACAAGCATAGGAAGATACTTCAAAACCAAAAAAACCAAGGTGCATCATTAATATTCATTTAATTCAAATACCAAATAGTTTACATAGGGCCAGCTTAGAAATAGATACTAAATCCAGAGCTACTGCAATCAAAGCTTATATGAGTGAATATGGTAGAGTTGCCTGCTAAAAGGCAATGTAATATAATTGCAGCTAGAACCCTACAGTGGGGAATGAGGAATTTTAAACACACATTTGATTACAGCCACCAAAAAAATAGACGTAAAAATAAAGGCATTTGGCTGGTCCAAGATGTAATTATCAATCAGTCAGCACCTGTGAttcttttacttatttttttgtggttttttttttttAAACAAATTTTAGCCCAATTTTCTTGAGTCATTCTCTCTCTGCAGCAGCAGAGGAAGGGCCTGTACCTCCCTACCAATGACTTGGTGTCCTTATTTTCTACCCCAAGAGCAGGGATATTAGCTGTGTCCAAATGGGTTCTGAATTCTACAGACTCATCAACATGAGGCAAGGAATCATTGAAAACCACCTGTGTCTCCTTTGGGAGAATGACATATCTTTAGTATTTACGTAGCTTATTCTTCTATATCTACATATGCAAAGCTTTCCTTAACAGTAAAGGGTACATATGCATAGTGGGAGGAGATCAGACCTTTACAAGTGAAGGAAAGCAACTTCAGAAATGAATTATTTTCTTTGCTTTATTATTTTTACCAAGACAGAGAAGTATTGTATTGAGAGATAATCTATTTTCATAATCAATATGTGCCTAAATTATATTTAAATCATTTCACTCTGTACTATATTTTCAGGAATTACAGAATGTGGTATTCATTCACTTAAAGGTACCTCTGTAGAAATAACCTAAAACTGCAGAAGGATCTGAAAGATCTAAACATGGTGTGCTTAGAAACTGCAGATTTTAGATCTAATGTATACTGCATTAATAAATGATATAAAGTGTTTGTTGAAAAGGAGTTTCTTCTCTTCCTTTTGAAAATCATCACTTTCTGTATTTTGCTTACATTTCTTCAATATGTGTTGACAACCAGCCCTGTGGTTCTGGGTAGCAAAGGAAATACAGTATAACTTAATTTGTTATGGATTAGTCTTTTTGAAAGTACCATTAAAGTAAATTTATTTCTTTAAA

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