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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name OOSP4BP5
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:47167598-47168228  UCSC
Coordinates (T2T) chr8:47543366-47543996  UCSC
Coordinates (hg19) chr8:48079221-48079851  UCSC
Strand +
Parental Sequence NM_001368161.2_2
Parental seq. overlap 534 bp
Parental seq. overlap (%) 66.4%
Genomic Region Intergenic
Retrocopy Summary OOSP4BP5, located on chr8:47167598-47168228, is a retrocopy of the parental gene OOSP4B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name OOSP4B
Full Name oocyte secreted protein family member 4B
Also known as -
Coordinate chr11:60023803-60031095
Strand +
Gene summary Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus OOSP4BP5
Gorilla Gorilla gorilla OOSP4BP5
Green monkey Chlorocebus sabaeus LOC103234798P2
Baboon Papio anubis OOSP4BP4
Golden snub-nosed monkey Rhinopithecus roxellana OOSP4BP3
Chimpanzee Pan troglodytes Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>OOSP4BP5
AATTAGAACTGGTGACATACATCTGGGAAATAACTGTCTTGTAACAAGACTGTTGTCATTTAACTACCAGTTTTGTTATCCTGTAACTTCTTGTGGGATGAAGAAAATTGTGTTCCAAAGAAATGATGTTTGCCATATTATTGGAGATCAGTTGTAAAACAATGTTGGATACTTCCTACGAATTACCAGTGGTTTGCTTTGTGAAGAGGTTTAAATTCCCATCTCTGGTGCATTTTGGAACAAGTGGCTTTGAGGTCAACACCTTGAAAGGTAGCCCTCAAAAGAACAAGAGTCTTCAGTTCCCACACAAAGTAAAAAATGTGAACTTAATTTTAGCATTGTTAATAGGGAACAACTATCCATGAATCCCTGCATCAAAATGCCTATGTTATAACATCCTCTCTTCCTAAGGCACAGGAGCAAGTGGTACATACTTGTCTGGCAACCAGTTTCATTAATGCTGTTGTTGTATCTGTCCAAAGATGAGAAGTAGTTTGTTACCAGTTTCACTACCTTTTGGAGTTTTAGATAACATATATCCACACTGTGATATTTACACTTTTTAATGACTCCCTTTTAAATAAAATTACCACTTTATGTGAAATCCAGTTCATGCATAATAAAGCTTGCC
>NM_001368161.2_2
GTCTGTCAGCACTGATAGTGTAATGTCTTGGGAGGAAGTATACTACCATATTACTTTTTGGATTTTTTTTCTTTTAGCAATAACTGCAATGTGCTCTGATGATTGGTTGTTAGTCAGAATGAAAATAAGGCCTTTTGATAAGAACACAGACATTAGAATTGGCGACATACACCTGAGAGATAACTGTCCTGTAACAAGACTGTTGTCATTTAACTACGCGTTTTCTTATCCTGTCACTTCTTGTGGGATCAAGAAAATTATGTTCCAAACAAATGATGACGCCATATTATCAGAGATCAGTTACAAACCAAGGTTGCATACTACCTATGAATTTCCAGTGGTTTGCTTTGTGAAGAGGCTTAAATTCCCCTCTGTGATGCATTTTGGAATGAGTGGGTTTGATGCCCACACCTTGAAAGAAATCCCTCAAAAAACAAAAGGACAAGAGTCACCAACTCCCACACAAAGTAAAACATGGACACTTAATTTTAACAGTGTTAATAAGGAGCAACTATCCAAGAAGTCACTGTATCAATAATGCCTGTGTTATAACACCCTCTCCTCCCTAAAGCAAGGGAACAAGTGATACATCTTGTCTGAAAACCAGTTTCATCAATACTGTTGATGTGTCTGTACAAAGATGAGTAGCAACATCTGTTACCAGTTTCACTACATTTTGGAGTTTTGAATAACATATCTATACCATGATATTTATACTTTTTAATGAGTTAATTTTAAGTGAAATTGCCATTCTAACTCTGAAATCAAGCTCATACATAATAAAGCTTGCCCATACCCA

Publications

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