Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GOLGA2P1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr8:86656737-86660348  UCSC
Coordinates (T2T) chr8:87777019-87780630  UCSC
Coordinates (hg19) chr8:87668965-87672576  UCSC
Strand -
Parental Sequence XM_005251932.1
Parental seq. overlap 2180 bp
Parental seq. overlap (%) 41.3%
Genomic Region Intragenic (CNGB3)
Retrocopy Summary GOLGA2P1, located on chr8:86656737-86660348, is a retrocopy of the parental gene GOLGA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GOLGA2
Full Name golgin A2
Also known as GM130
Coordinate chr9:128255829-128276000
Strand -
Gene summary The Golgi apparatus, which participates in glycosylation and transport of proteins and lipids in the secretory pathway, consists of a series of stacked cisternae (flattened membrane sacs). Interactions between the Golgi and microtubules are thought to be important for the reorganization of the Golgi after it fragments during mitosis. This gene encodes one of the golgins, a family of proteins localized to the Golgi. This encoded protein has been postulated to play roles in the stacking of Golgi cisternae and in vesicular transport. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of these variants has not been determined. [provided by RefSeq, Feb 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes GOLGA2P1
Bonobo Pan paniscus GOLGA2P1
Gorilla Gorilla gorilla GOLGA2P1
Orangutan Pongo abelii GOLGA2P1
Gibbon Nomascus leucogenys GOLGA2P1
Green monkey Chlorocebus sabaeus GOLGA2P1
Crab-eating macaque Macaca fascicularis GOLGA2P1
Rhesus Macaca mulatta GOLGA2P1
Baboon Papio anubis GOLGA2P1
Golden snub-nosed monkey Rhinopithecus roxellana GOLGA2P1
Marmoset Callithrix jacchus GOLGA2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GOLGA2P1
GTGTTGCGGCTTGTGGGCAACCACAACAAGTGGCATGGCAAATTCCTGGCAGCTGCCAAGAACCCTGTTGATTAGCCCGCTCCAGGTGCCCCAGCTCCCACAGGAGCTCGGGGCTGCCAACAAACAGGGTGATCTTTGCAAGATGAGCCTCGCCCACAGCATGGAGCCTGCACAAGAAGAGGCCAGGGAGGGTTCTCCCCATGACAATCCCACTGCACAGCAGATTATGCAACTGCTTCCTGAGATGCAGAACCCCCAGGAGCACCCAGGCTTGGGCAGCAACCCCTGCATTCCATTTTTCTATCATGCTGACAAGAAATGAGGTGAAGATCACCATCATCTAAAAGCCGGCCACTGTCAGCAAAGCTTGGAGAAGTGGGGCCAGAGGCTCCATCCCCACCAGGTCCTTACCACCCCTTCCCAGTCACCCCATTATCCTTAGAGGAGCAAGGTAAGACCCCTGTGTGATGGGGGGAGACAAACAAGTGCAGACCCTTTGCCACCTTGGCCAGGGCTGAGTCCTTAATTTCTGGATGATTATGTTGTTATTTAAGAGCCAGAGGCTCATAGGGTTGATTTATTTGCAGGAGGCCTGGTGGCCTCCCTGATGGCCTGACTCACTAAGCAACTTTTCCTTCACGGGGGCTCCCATCTTCTTACTCAGAGAGGCAGCTGAGGCAGGACAATGGGGCTAAATGTAGACCAGGCAAGAGAACAGGCTGCTGGGGGTGGCTCCCCTTCCCCAGTGTACATATTCTATCTGTGTAAAATTTTGTATATTCCAGGGTAGGGCCACCCCCTGTATCATACATAGAGGAGGTTGAAGCTGGTACATGGGGAGGAGGTTCTAGTAATTATTTGGGACTGGGAAACTTCTTTATTGATAGTACGGGACAGAGAAAGGAGGCAAGGATGGGGTCATGGTGCCCTGGTGATGCAACTTCTGTTTATTTTGCTTTTTCTTTTGGAATAAATGGATTTAGCCATTGCAGTGGTTGCCAGGATCGTGCTGATATGGCCCCAACCCCACCTCCCACCCTGCCTGTGATGTCTGAAGAAACCCTACAGAGCAAATTGGCTGTGGCCAAGAAAACATTGAGAGAATATCAGCATACAAACAACTCTGGTGTAGGTACAAGAGCAAAAAAGGAGAAAATGAAAAATGGCAGCAATCCTGAGACAACCACTTCTGGTGGTTGCCATTCACCTGAGGATATGTGCAAAGACCATGCTTTCTCCTCTACAACTGTCTGCTCATGACACCATGTTAGCTGGTGGTGTCTCTTCCCCTGGTGCCAGTCTCACTAGCATGGCGGCACCTCAGAATCATGATGCTGACATTGGTCCCAATCTCATGGATGAAACCAAGACTTTCTCATTGATCAAGAGCCCAGGACAACTCTTCAACAGCTCAATTGTCTTGCCTCTGAGTCTACATCCTTTGTCAATGGGGAGGGCCCTGCATCATCTGCTAACCTGAAGGATCTGGAGAAACAACAAAACCAAGAAATTCTGGATCAACTGGAAGAAGAAAAGAAAGCAAGCAACTGAAAGCAGGGAGCCAAAGGGAGTGGTTACAGGTTCAAATTCAGACCATAGGGATCCTCATGTCCGAGAAGGCAGAGTTATGGACAGCTCTGTATTACACTCAGCATGCTGCCAGGCAGTTTGAAGGAGAGTCAAAGGATCTGGCCAGCTGCCTGCAGTATTCCTGGCGCGTGTGGGAGAGTTGGAGTGGGCTCTCTCTGCTGTCTCTACATAGCAGAAGAAGACACAAATACAACAAAGAGTTAACCAAGGAGAGAGATGCCCTCAGGCTGGAGTTATATGAGGATCTGAAGCCACAGAACTCAGAATTAGAAGAGAAATTTGAGTCCTAGTGACAGAGAAGTCAGGAATCCAGCTCAACTTGGAGGATCTGCAAAAGAAGCTGGAGAGGCCAAGCTCCTGCTTCAATAGTCCTCAAGCCAGTGTGAACCCCCTGATGCTAACCAGCAGTTACAGCAGGCCATGGAGGAGCAGGCACAGCTGGAAGCACACCTGGGGCAGGTTATGGAGTTGCTGAAACAGCTACAGATGGAGAAAGACCAATATACTGAAAATCTGAAAGGAGGGAGGGCCATGCGGTAGCAGAGGATGCAGCCGATGTCAGAGCAGGTGCACACATTGAGGGAGGAGAAGGAGCACAGCATGACTCGGGTACAGGAGCTGGAGACCAGCTTGGCCAAACTGAGGGAACAGATCGCTGAACCCCTGCTCCTGGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAGCAGCTATAAGTGGAGGCCGAGCACCTGCGGAAGGAGCTGGAGGGTCTGGCAGGACAGCTCCAAGCCCAGGTGCAAGACAATGAGGGCTTGAGTCTCCTGAACCGAGAGCAGGAGGAGAGGCTGCTGGAGCTAGAGCAGAAGGCTGAGCTCTGGGAGGAGCAGGTGGAGGTGCACAGGCAAACCCTGGAGACCATGCAGAATGACCTCACCACCATCAGTCATGCAGTCTTCCAGAATGGTGAGCTCAAAGAGCAGCTGGCCAAGTTGCAGACTGGCTTCATGAAGCTGAACAATGAGAACATGGAGATCACCAGCACACCACAGTCGGAGCAGCACATCAAGAAAGAGCCGAGCGAGAAGCTGGGTGAGCTGAAGGAGATGGTAGAGCTGAAGAGCCAAGAGGCTCAGAGTCTACAGCAGTAGTGAGATCAGTACCTGGGTCACCTGCAGCAGTATGTGGCCACCTATCAGCAGGTGCCCTATGAGAAGGAGCTCCACAAGCAGTTACTGCTGCAGACCCAGCTCATAGACCAGCTGCAGCAGGAGGAAGCTCAGGGCAAAGTCGTGGCCAAGATGGCCTGCCAAGGGTTGCAGGAGACCCAGGAGCACCTGGAAGCTACCAGCCAGCAGAAGTAGCAGCCACAGGCCCAGCTGACCCTCATGGCTCTCCATGGGGAAGGAGATGGACTGGACAGTGAGGAGGAGGCGCTTCCGCTCATGCCAAGCATCCCGGAGGAACTGGAGAGTCGGGAGGCCATGGTGGCATTTTTAAACTCAGCTGTGGCCAGTGCCGAGGAGGAGCAGGCATGGCCACGTGGGCAGCTGAAGGAGCAAAGGGTGAGCTGTCAGGCTGTCAGTGTCTGGCTCACCTGGTGGCCTCAGTCCAGAAGGAGCCAGAGGCAGCAGCCCTAGTCCCAGGGACTGGAGGCGATTCTGTGTGTGGGGAGGCCCACCCGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGAGCCACTTTATGGAGCTCATGCAGGAGAAGGTGGACCTGAAGGAGCAGATGGAAAAACTGGAACGTCGCTGCATCCAGCTGTCTGGAGAGACAGACGTCATCAGTGAGGGGGAGGCCAGGGCATGGCAGGGGGAGCTGCACGGTGGTCAGAGGGGTCCCAGCGTCTGAACCCTGTCCTCCCGCAGGAAAGTACATCACACTGTACCAGAGCTAGAGGTCAGTGCTGAAGACGTGGCACCAGAAGGAATACATCAGCAGCCTGGCCCAGGACAAGGAGGAGATGAAGGTGAa
>XM_005251932.1
GCAGTGGTTGCCGGGATCGCGCTGATGTGGCCCCAACCCCGCCTCCCTCCCCGCCCCGCGATGTCGGAAGAAACCCGACAGAGCAAATTGGCCGCAGCGAAGAAAAAGTTGAGAGAATATCAGCAGAGGAATAGCCCTGGTGTTCCTACAGGAGCGAAAAAGAAGAAGAAAATAAAAAATGGCAGTAACCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGATACACCCAAGGACAATGCTGCTACTCTACAACCATCTGATGACACCGTGTTACCTGGCGGTGTCCCTTCCCCTGGTGCCAGTCTCACTAGCATGGCGGCATCTCAGAATCATGATGCTGACAATGTCCCTAATCTCATGGATGAAACCAAGACTTTCTCATCAACCGAGAGCCTGCGACAACTCTCCCAACAGCTCAATGGTCTTGTTTGTGAGTCTGCGACATGTGTCAATGGGGAGGGCCCTGCATCGTCTGCTAACCTGAAGGATCTGGAGAAACAACAGAACCAAGAAATTACGGATCAGTTGGAAGAAGAAAAGAAAGAATGCCACCAAAAGCAGGGAGCCCTAAGGGAGCAGTTACAGGTTCACATTCAGACCATAGGGATCCTCGTATCAGAGAAAGCTGAGTTACAGACAGCCCTGGCTCACACTCAGCATGCTGCCAGGCAGAAAGAAGGAGAGTCTGAAGATCTGGCCAGCCGCCTGCAGTATTCCCGGCGGCGTGTGGGAGAGTTGGAGCGGGCTCTCTCTGCTGTCTCCACGCAGCAGAAGAAGGCAGACAGGTACAACAAGGAGTTAACCAAAGAGAGAGACGCCCTCAGGCTGGAGTTATACAAGAACACCCAAAGCAATGAGGACCTGAAGCAAGAGAAATCAGAATTGGAAGAGAAGCTTCGGGTCCTAGTGACTGAGAAGGCTGGCATGCAGCTTAACTTGGAAGAATTGCAAAAGAAGTTAGAGATGACGGAACTCCTGCTTCAACAGTTTTCAAGCCGGTGTGAAGCCCCTGATGCTAACCAGCAGTTACAGCAGGCCATGGAGGAGCGGGCACAGCTGGAAGCACACCTGGGGCAGGTAATGGAGTCGGTTAGACAACTACAAATGGAGAGAGATAAATATGCGGAGAATCTCAAAGGAGAGAGCGCCATGTGGCGGCAGAGGATGCAGCAGATGTCAGAGCAGGTGCACACATTGAGAGAGGAGAAGGAATGTAGCATGAGTCGGGTACAGGAGCTGGAGACGAGCTTGGCTGAACTGAGGAACCAGATGGCTGAACCCCCGCCCCCAGAGCCCCCAGCAGGGCCCTCCGAGGTGGAGCAGCAGCTACAAGCGGAGGCTGAGCACCTGCGGAAGGAGCTGGAGGGTCTGGCAGGACAGCTTCAAGCCCAGGTGCAAGACAATGAGGGCTTGAGTCGCCTGAACCGGGAGCAGGAGGAGAGGCTGCTGGAGCTGGAGCGGGCGGCCGAGCTCTGGGGGGAGCAGGCGGAGGCGCGCAGGCAAATCCTGGAGACCATGCAGAACGACCGCACTACCATCAGCCGCGCACTCTCCCAGAACCGGGAGCTCAAGGAGCAGCTGGCTGAGCTGCAGAGCGGATTTGTAAAGCTGACTAATGAGAACATGGAGATCACCAGCGCACTGCAGTCGGAGCAGCACGTCAAGAGGGAGCTGGGAAAGAAGCTGGGCGAGCTGCAGGAGAAGCTGAGCGAGCTGAAGGAAACGGTGGAGCTGAAGAGCCAAGAGGCTCAAAGTCTGCAGCAGCAGCGAGACCAGTACCTGGGACACCTGCAGCAGTATGTGGCCGCCTATCAGCAGCTGACCTCTGAGAAGGAGGTGCTGCATAATCAGCTACTGCTGCAGACCCAGCTCGTGGACCAGCTGCAGCAGCAGGAAGCTCAGGGCAAAGCGGTGGCCGAGATGGCCCGCCAAGAGTTGCAGGAAACCCAGGAGCGCCTGGAAGCTGCCACCCAGCAGAATCAGCAGCTACGGGCCCAGTTGAGCCTCATGGCTCACCCTGGGGAAGGAGATGGACTGGACCGggaggaggaggaggatgaggaggaggaggaggaggaggCGGTGGCAGTACCTCAGCCCATGCCAAGCATCCCGGAGGACCTGGAGAGCCGGGAAGCCATGGTGGCATTTTTCAACTCAGCTGTAGCCAGTGCCGAGGAGGAGCAGGCAAGGCTACGTGGGCAGCTGAAGGAGCAAAGGGTGCGCTGCCGGCGCCTGGCTCACCTGCTGGCCTCGGCCCAGAAGGAGCCTGAGGCAGCAGCCCCAGCCCCAGGGACCGGGGGTGATTCTGTGTGTGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAGAGCCGCTTTATGGAGCTCATGCAGGAGAAGGCAGACCTGAAGGAGAGGGTAGAGGAACTGGAACATCGCTGCATCCAGCTTTCTGGAGAGACAGACACCATTGGAGAGTACATTGCACTGTACCAGAGCCAGAGGGCAGTGCTGAAGGAGCGGCACCGGGAGAAGGAGGAGTACATCAGCAGGCTGGCCCAAGACAAGGAGGAGATGAAGGTGAAGCTGCTGGAGCTGCAGGAGCTGGTCTTACGGCTTGTGGGCGACCGCAACGAGTGGCATGGCAGATTCCTGGCAGCTGCCCAGAACCCTGCTGATGAGCCCACTTCAGGGGCCCCAGCCCCCCAGGAACTTGGGGCTGCCAACCAGCAGGGTGATCTTTGCGAGGTGAGCCTCGCCGGCAGTGTGGAGCCTGCCCAAGGAGAGGCCAGGGAGGGTTCTCCCCGTGACAACCCCACTGCACAGCAGATCATGCAGCTGCTTCGTGAGATGCAGAACCCCCGGGAGCGCCCAGGCTTGGGCAGCAACCCCTGCATTCCTTTTTTTTACCGGGCTGACGAGAATGATGAGGTGAAGATCACTGTCATCTAAAAGCCGGCTACTGTCAGCAAAGCCTGAAGAAGTGGGGCTGGATACCCTGCCCCCACCATATCCCTACCATCCCTTCTCAGTCAACCCTTTACCCTTACAGTAGCAAGCATAGACCCCTGTCTAACGGGGGTAGACAGGTGCAGATGAGGTGAAGATCACTGTCATCTAAAAGCTGGCCACTAAATTAAAAAAAAATTAAAAGTTATGGGATTAAAAAAAGTTATGGGATAAAAAAGGTTATGGGTAACTTATGGTATAAAAGTTATGAAAAAAggccaggtgcagtggctcacgcctgtaatcccagcacttttgggaggctgaggttgggagttcaagaccagcctggtcaacatggtgaaactgtgtctctactaaaaatacaaaaattagccaggcatggtggcacgtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgggctgagatcacgccattgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaattatgaaaaaaGTTATGGGATTAAAGAAAGTCAGGATAAAAATTTTAAAAAGCAGGCCACTGTCAGCAAAGCCTGGAGAAGTGGGGCCGGAGGCTCCGCCCCCATCATGTGCCTGCCACCCCTTCCCAGTCATCCCTTTACTCTTACAGTAGCAAATAAGACCCCTGTCTAATGGGGGGAGACAAATGTGTAGACCCTTAGCCACCTTGGCCAGGGCTGACTCCTTAAATTTCTGGATGATGATGATTGTTATTTAATAGCCAGAGGCTCATATAATTGGCCTCTTTGGAAGAGGCCTCATGGCCTCCTTACTCTCACCAAAGCAATTTTTCCCTCAGGGGGGCTCCCATCTTCTTACACAGAGAGGCAGCTGAGGCAGGACAGTGGGGCTAACTGTAGACCAGGCGAGGGCACGGGCTGCTGGGGTGGCCCTGCTTCCCCAGTGTACATATTGTATCTGTGTAACATTTTGTATATTCCAGGGGTAGGGCCGCCCCCTGTATCATACCTAGCAGAGGTTGGAGCTGGCACATGGGGAGGAGGTTCTAATAATTATTTGGGGCTGGGAAACTTATTTATTGATAGCATAGGACAGAGGAAGGAGGCGGGGATGGGGTCGTGGCGCCCTGGTGATGCGACTCCTGTTTATTTTGCTTTTTATTTCGGAATAAATGGATTTAGCCATA

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