Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DNAJC15P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:125372330-125372679  UCSC
Coordinates (T2T) chr9:137571514-137571863  UCSC
Coordinates (hg19) chr9:128134609-128134958  UCSC
Strand -
Parental Sequence NM_013238.3
Parental seq. overlap 299 bp
Parental seq. overlap (%) 4%
Genomic Region Intergenic
Retrocopy Summary DNAJC15P1, located on chr9:125372330-125372679, is a retrocopy of the parental gene DNAJC15. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DNAJC15
Full Name DnaJ heat shock protein family (Hsp40) member C15
Also known as DNAJD1|HSD18|MCJ
Coordinate chr13:43023586-43114213
Strand +
Gene summary Predicted to enable ATPase activator activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within several processes, including cellular response to starvation; negative regulation of mitochondrial electron transport, NADH to ubiquinone; and negative regulation of protein-containing complex assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be part of PAM complex, Tim23 associated import motor. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes DNAJC15P1
Bonobo Pan paniscus DNAJC15P1
Gorilla Gorilla gorilla DNAJC15P1
Orangutan Pongo abelii DNAJC15P1
Gibbon Nomascus leucogenys DNAJC15P1
Green monkey Chlorocebus sabaeus DNAJC15P1
Crab-eating macaque Macaca fascicularis DNAJC15P1
Rhesus Macaca mulatta DNAJC15P1
Baboon Papio anubis DNAJC15P1
Golden snub-nosed monkey Rhinopithecus roxellana DNAJC15P1
Marmoset Callithrix jacchus DNAJC15P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DNAJC15P1
ACCAGCAGGGACTGGCAAGAACTGTGACAGCTGCAGGGCTGGGTGCTGCTGCTCTTGCCTTTGCAGGTCGCTGTGCGTCGCAGTCCTGGAAACCTCTAGAACAAGGATCACAGAAGCAGTAGAGAACCTTTGAACTCCTAGCCTGTCATCCTATTACAAAGGAGGATTTGAACAGAAAATGAGTAGGAGAAAAGCTAGTGTTATTTTAGGTGTAAGTTCACCTGCTGGCAAGGCTAAGATTAGAGCAGCTCACAGGAGAATCGTGATTTTGAATCACCCAGATAAAGGTGGATCTCCCTACTTAGCAACCAAAATAAATGAAACAGAAGATTTGCGAGAAGCGACCACCG
>NM_013238.3
AGTCACTGCCGCGGCGCCTTGAGTCTCCGGGCCGCCTTGCCATGGCTGCCCGTGGTGTCATCGCTCCAGTTGGCGAGAGTTTGCGCTACGCTGAGTACTTGCAGCCCTCGGCCAAACGGCCAGACGCCGACGTCGACCAGCAGAGACTGGTAAGAAGTTTGATAGCTGTAGGACTGGGTGTTGCAGCTCTTGCATTTGCAGGTCGCTACGCATTTCGGATCTGGAAACCTCTAGAACAAGTTATCACAGAAACTGCAAAGAAGATTTCAACTCCTAGCTTTTCATCCTACTATAAAGGAGGATTTGAACAGAAAATGAGTAGGCGAGAAGCTGGTCTTATTTTAGGTGTAAGCCCATCTGCTGGCAAGGCTAAGATTAGAACAGCTCATAGGAGAGTCATGATTTTGAATCACCCAGATAAAGGTGGATCTCCTTACGTAGCAGCCAAAATAAATGAAGCAAAAGACTTGCTAGAAACAACCACCAAACATTGATGCTTAAGGACCACACTGAAGGAAAAAAAAAGAGGGGACTTCGAAAAAAAAAAAAGCCCTGCAAAATATTCTAAAACATGGTCTTCTTAATTTTCTATATGGATTGACCACAGTCTTATCTTCCACCATTAAGCTGTATAACAATAAAATGTTAATAGTCTTGCTTTTTATTATCTTTTAAAGATCTCCTTAAATTCTATAACTGATCTTTTTTCTTATTTTGTTTGTGACATTCATACATTTTTAAGATTTTTGTTATGTTCTGAATTCCCCCCTacacacacacacacacacacacacacacacacGTGCAAAAAATATGATCAAGAATGCAATTGGGATTTGTGAGCAATGAGTAGACCTCTTATTGTTTATATTTGTACCCTCATTGTCAATTTTTTTTTAGGGAATTTGGGACTCTGCCTATATAAGGTGTTTTAAATGTCTTGAGAACAAGCACTGGCTGATACCTCTTGGAGATATGATCTGAAATGTAATGGAATTTATTAAATGGTGTTTAGTAAAGTAGGGGTTAAGGACTTGTTAAAGAACCCCACTATCTCTGAGACCCTATAGCCAAAGCATGAGGACTTggagagctactaaaatgattcaggtttacaaaatgagccctgtgaggaaaggttgagagaagtctgagGAGTTTGTATTTAATTATAGTCTTCCAGTACTGTATATTCattcattactcattctacaaatatttattgaccccttttgatgtgcaaggcactatcgtgcgtcccctgagagttgcaagtatgaagcagtcatggatcatgaaccaaaggaacttatatgtagaggaaggataaatcacaaatagtgaataCTGTTAGATACAGATGATATATTTTAAAAGTTCAAAGGAAGAAAAGAATGTGTTAAACACTGCATGAGAGGAGGAATAAGTGGCATAGAGCTAGGCTTTAGAAAAGAAAAATATTCCGATACCATATGATTGGTGAGGTAAGTGTTATTCTGAGATGAGAATTAGCAGAAATAGATATATCAATCGGAGTGATTAGAGTGCAGGGTTTCTGGAAAGCAAGGTTTGGACAGAGTGGTCATCAAAGGCCAGCCCTGTGACTTACACTGCATTAAATTAATTTCTTAGAACATAGTCCCTGATCATTATCACTTTACTATTCCAAAGGTGAGAGAACAGATTCAGATAGAGTGCCAGCATTGTTTCCCAGTATTCCTTTACAAATCTTGGGTTCATTCCAGGTAAACTGAACTACTGCATTGTTTCTATCTTAAAATACTTTTTAGATATCCTAGATGCATCTTTCAACTTCTAACATTCTGTAGTTTaggagttctcaaccttggcattattgacatgttaggccaaataattttttttgtgggaggtctcttgtgcgttttagatgattagcaataatccctgacctgttatctactaaagactagtcgtttctcatcagttgtgacaacaaaaatggttccagatattgccaaatgccctttagaggacagtaatcgcccccagttgagaaccattTCAGTAAAACTTTAATTACTATTTTTTCTTTTGGTTTATAAAATAATGATCCTGAATTAAATTGATGGAACCTTGAAGTCGATAAAATATATTTCTTGCTTTAAAGTCCCCATACGTGTCCTACTAATTTTCTCATGCTTTAGTGTTTTCACTTTTCTCCTGTTATCCTTGTACCTAAGAATGCCATCCCAATCCCCAGATGTCCACCTGCCCAAAGTCTAGGCATAGCTGAAGGCCAAGCTAAAATGTATCCCTCTTTTTCTGGTACATGCAGCAAAAGTAATATGAattatcagctttctgagagcaggcattgtatctgtcttgtttggtgttacattggcacccaataaatatttgttgagtgaatgaatAAATTCCCATAGCACTTTATTCTTCACATGGTACATAACTATAGGGGCTATAGCTTGGtaccttgtgaagcaactcttggtgtaacataccttatttctcatactaaaatgcaagaacctttagagcaaggatcttgccattcatctttgtaacctctttactctggagcacttgcatttagcaggcatcataaagtttTACGTACCAAGAAAATGTTGCTGTTTTCTGAATACTATGCATCAAAAAATGTTACCACTAATTTTTAAAGCTCTGCTAAGGAATATTGGGGCACCCTCAGATGCACCTTTTAATTGATGTCATATTTTCCTAATCCATACTTTATTCATGAGAATTTGAGTCACCCCAGCATTAGCTTGGAATTTCCTTATTTCCCATTTGCTTTgcaggtgccttggagtcagatctggttttgaatactatcttcctgttatgtgatcttgggcagttacttaattttctagtcaataacccgtatctataaaatagagaaaataatcctacacaccggggcctgttgtggggcggggagaggggggagggatcgcatttggagatatactaatgtaaatgacaagttaattggtgcagcacaccaacatggctcatgtctacatatgtaacaaacctgcacgttgtgcacatgtgccctagaacttaaagtataataaaaagaaattttaaaaaatcctgtcaaataaggttatagtagagaataaggatgtgtaaagcatttagtcacgtaaatgcttAAAAAAATGTAATTTTTACTTCTTTCACTGCCTCATTTAATTAGTTTTATCTTTAATAATACCTTGGATTCAGGGTAAAGTTTCAGTTATGTCCcagtaatcatttattttaccctcgaatctgcaatttggatagaacatggtggggacagctcgtctctattccttgcagcattaacaggctggaggcaccacttctctggccagcaagttgggcctggttgttggctgagagcctcagttcctttctgcacaggttcctctttacataggcttctcaacagggctactagagcatcgtcaccatagcagctgtcttataacagagagtggtcggtctgagagacaaaaaatggaagctgccaaattgttctgggtctggaaactgtcagggcatcacttgtgccatattcagttggcctaagaattacagagcctgcctcgattcaaagggagaggatagagaggactgaaggaatcagtgctcatctttaatATGCAGCAGGACAGGTTTGGGATTTTTTTTCCCCCTTGAGTCTGTGAAGGCATTACTTAAGAACAAAGTCAGGCATGTATAATTGAACTACAGTTACTTGAAATATAAGCCCAGAAAGTTTCAGATAATAAATACAACTATTTTTCTGCTGTTACCCTTGTACCTAAAGATGCCATCCTAATCCCCAGATCTCCACAACTATACCTACATAGTAGAAGGTTAAAATGTATCCCTCTTTTTCTGGTGCATCCAGCAAAAGTAATATCAtgaattatgagctctctgagagcaaggatcatatcagtcttgtttattgttgCAGTGAACAAGTACAGTTGCAGATATTCAGGAGTAATTATCTAAATGGCAGTAGGCTTATAAAACTGAATTTTCACCAGCCACACCCTCCCCCcaactccttatctgtaaaaagcttatttgagtggttacctgtcttcagtaaagattgcgcttgcatatttgctgtcattgcatattctgcttaattaagctctgttgatattgcagtttctgtgcatacttacatcttagatgcaatctgagggcctaggaaggccttttaaaaataaaacaattccgattgcagagaaagtgtaagtcaaggacagttAATTCAAGGGGAACATAGAAAGCTATTTAGATTTTAGTTGATGGTGCCAGTCTTCAGCGTAAAGTCAAAAGTGGAGGGAAGTTTAGTAAGGAAAAAATGTTGGGCTTGGAATACATTGTTTAGTCTTCAAAGCACTTTACTTTTTATGAAATATATTTTAGACATTCAGCAAATATTGAATACTTACTATATCAGGCAGTAAAGATATAAATTCATTCTTAAAATGTGCAACATGTTCAAACTGAAAAAAATACATTCTTAAACAGGAAACTTTTTCCTTCATACTTTTTAATTAACAAGACATATAAGAGTTGCATTAATGGGCGTGCTTATGATTGATCACCCAGCAGCATCATTAGAAATAATATATTTTATTCATGTGCAGAAATCTTTTGGTTGTCCTGGGGAACCTTGAACACAGAAAAGAGCTTTTATTGATAAGGTAATTGAACACACTTGACAATTAGCTTAATATGGTTTAATACCATTTGTGGGAGAAGATGAATCAGCCAGGCTCTTTACGTCAAGAATATGAAGTTTCTCTTGAGTCAACCAACTTAAGATGAgctacggagactgcagtgaaaagttaaatatccaagtacaccagccaatttcacacagtggaaccatgctgtcctcgggcaccctgcacctcgcccaacagtcatcaactagatggaggctcctggctgcaaggaggatttgatgggaatgagtaaatgtgtcagcatagtccgtcccttctaatggaaaagcaacccaaagagcaaatcctattaatggctggatcagtatcatctacttgtCAAAAACATTCCATGAATTATGAGTCAAAATTTTATTTATGGTGGCATTACACACATTAAGAGATGAGGACTTCTGTTAGCATAATTTATTAGCTGGAAAAGTTGAGAAGGTTCTCTGGACTCATTTTTATAGGTGGAACCTAAGTGATCTGGATAATTGCCCACCAGCAAAATTGCTGGGCATGGTGGACAAAGAAAATGTTCCTTCTAATGATTTTTTATGAGCTGAGTAGCTATTGTTCCCAGCTGAGTGCTCTTTTCCTCTTTTTATTGTTGCTGAGCAAAAGAATTTATAAAAAGCTCTTTCTTTTGTATTAAAAACCCTGCTCAATTGAAATGCAAGTTCATTAAGTAATCTTCATTTCTCTTCCTGCCATAATAACCCTTTCCCTCTCTGTTCGATTCAACAGTATCTAGCAGCACTGCTCCAAATTTTAAGTCTGAACAGACTATATTACATAGATGTAGAGAAATACTCAATCTTCAGCATTAAGAGGGAGCTTAATTTCACACGGGTGGAATATGATCACTCAGGCTAGATGTTGGCCATAAATTTCAAATTAGTATCTCAACTTAGCAGGGGGGATCAACAGTGGCAAACTTCAATTATGACAGGATAAAAATCACATAGAGATATTGGTTCAATATGGACATCTAAACTATAATGCTAAAAGCCAATAATTAGAATAAGTTCATTTTAAGAAAAGCATTAATAATATTAGCTAACGTTTAGTACctgtgccaaacattctacctatgttaccttgattttcatagccagcctaagaggtactattatgtatccccattttacaggttaagaaacaggctcagaggagtttaggatcttttccaagattacatagccagtaagtggtggcactaggaaccaaattcagactctgaatcgcatgctgtttatattatattgcactCATTCTAAATATGTGGGAATCAGAATGAAGGGGCTTGTATGACTTTTGGCTCATTTTTTGATGCATGTGACCTGGGATTATAAATGTGAAATTAGGTTTACGAAAGGATCCAGTGTCATTGTGCATCATGGGCAAGGAGTACCTAATCTCTTTAATTCTTCCCTGGAAGCTTACGATGTCCATCCAAGTGCACATAGCAAAAGTTCTGTTGTAAAGTTTAGCAGAGTGACTTTCTTTGACTCAGAGTGATGACGGAGGAAGCTTTGATAAGATTTTATCTGAAATGTTCATGGACAAGAGCTTTCAAGGAGAACATCCAGAGCAAGGTTCTGAAGACAGCTCATGAAGGTGAAGCAGCAGACCTGGCACAAGAAATGAAGAGAGAGCTCAGTGTATTAAAGATGAAAACAAGAAAACCGAATATATTGAAAGGAGCAGAGAGGCAATGAAAACAAGACAACTGAAATGAGGTAACTTGCAGCAATTGAAAGGGAATTTCAGTACTTTTATAGAATTCTTAAAAATTGTTTCCTGCTGTTTATTTTCAATTTTGAACAGGGTTATTTGTCCATGCCATACTTTTTTTGCCAAATTCCAAAATTGTGTATAGTTCTATAGTTGTCTGGTGGAGTCAATGGAACTTTAGTTACCAGTCTAAGAATGTGTCTTTGAGATTGTCCAGTTAATTCTCTATTTCCAGTAGCTGTAATAAATGGTGAAAAGGTTTCTGACTCCTGGAGAAAGTTTCTAACTCCTTATGACTAATATTCATAACAGACttgtgagttccttgaacatggatacacctatatgcaagagtgtattccaaagctaactcagtgatctttccatttatctattcttggattagtggtgcctttgctctttccttctgtaaatgtgaatagttaagagttgactgCAGAAGTGTTTACACTTTGGCTTCCATGCCTCTGGAATGTTTGTGCTTTGGTGGTGAGATGTGAGACTATATTTGTATAGTCTGCATCTCTCAGGCTGCCCCAGAATGTTGTACAGTGCAGTGCTGAAGAAAGCAGCAGGTACACACAGAAATGCAGCCTTTCCTGGTTAACCCTGCTTGGATCTGAGTTACACTTTGTTTCCTGACTTCTTGGGACTTAGGTAATCAGTTTGCCTTCTACTCTATCTCATTTTGTACTCGCTTACATACTACATTCTTGTTTGGGCTTTCGTTTCTTCTTGTAAGCAGAGATTTTTTAAAATCCAATATGTGAAAATACGGATGCACTACAATTAAATAAATAAAATGCTGTTGTGTTTGTTTTGCTTTAAAATTGTAAAGGATAAACAATAAGATAGTTTTATCTATGTGGTTTTCCCGATGCAGTTAAAATAAAACCTAATCTGCTAAAATTGAA

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