Retrocopy Name | PSIP1P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chr9:15054983-15056607 UCSC | |
Coordinates (T2T) | chr9:15064793-15066417 UCSC | |
Coordinates (hg19) | chr9:15054981-15056605 UCSC | |
Strand | + | |
Parental Sequence | XM_024447400.1 | |
Parental seq. overlap | 1502 bp | |
Parental seq. overlap (%) | 78.9% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | PSIP1P1, located on chr9:15054983-15056607, is a retrocopy of the parental gene PSIP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | PSIP1 |
Full Name | PC4 and SRSF1 interacting protein 1 |
Also known as | DFS70|LEDGF|PAIP|PSIP2|p52|p75 |
Coordinate | chr9:15464066-15511004 |
Strand | - |
Gene summary | Enables DNA-binding transcription factor binding activity; chromatin binding activity; and transcription coactivator activity. Involved in mRNA 5'-splice site recognition and positive regulation of transcription by RNA polymerase II. Located in heterochromatin; nuclear periphery; and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | PSIP1P2 |
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Bonobo | Pan paniscus | LOC100979736P2 |
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Orangutan | Pongo abelii | PSIP1P2 |
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Gibbon | Nomascus leucogenys | PSIP1P1 |
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Gorilla | Gorilla gorilla | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>PSIP1P1 |
TGCCCTCATCCCCGCACCGCCGCATCTCCTCGCTGCCTCCCGGGCTTCGGACCCCCGGTCTCACCCCCTGAAACACGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCCCACTGGCCAGCTGGAGTAGATGAAGTTCTTGATGGAGCTGTAAAGCCACCCACAAACAAACTACCCATTTTCTTTTTTTGGAACTCATGAGACTGCTTTTTTAGGACCAAAGGTTATATTTCCTTACTCCGAAAATAAGGAAAAGTATGGCGAACCAAACAAAAGATTTTAACGAAGGTTTATGGGGACAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGCAGCAACTAAACAATCAAACACATCATCCAATGTTGAAGTTGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACCGACCATGAAGAAAAAGCCAGCAATGAGGGTGTGACTAAAGCAGTTGACATAACTACTCCAAAAGCTGCCAGAAGAGGGAGAAAGAGAAAGGCAGAAAAACAAGTAGAAACTGAGGAGGCAGGAGTAGTGACAACAGCAACAGCATCTGTTCATCTAAAAGTGAGTCCTAAAAGAGGACGACCTGCAGCTACGGAAGTCAAGATTCCAAAACCAAGAGGCAGACCCAAAATGGTAAAACAGCCCTGTCCTTCAGAGAGTGACATCATTACTGAAGAGGACAAAAGTAAGAAAAAGGGGCAAGAGGAAAAACAACCTAAAAAGCAGCCTAAGAAGGACAAAGAGGGCCAGAAGGAAGAAGATAAGCCAAGAAAAGAGCCAGACAAAATAGAGTAGAAGAAAGAAGTTGAGTCAAAAGGAAAAATTTAGCTAACACAGGGGTTACATCAACCTCCGATTCTGTGACAGGAACGTTCAGACTGCTCACAGAAGGAATATGCTGAAAGGCCAAAATGAGAAAGAAGCAGCAGATCGAAAACGCAAGCAGGAAAAACAAGTGGAAACTGAGCACCAAACAAGATGTAATCTACAGTAATAAAAAATATCTCATTTTGGGCTCAAAGCATTAATCCAGTTACTGAAAAGAGAATACAAGTGGAGCAAACAAGAGATGAAGATCTTGAGACAGACTCATTGGACTGAATTTCCCCCTTCCCCCCATTGATGGAAGAATGTTCCAGATTCTAAATGGAGGACTTCATTATTAATGGCATTACTGTGTTATGATTAACAAATTTCCTGTAAGGTACACACTACATACTAAGGTCGGCCATCATTCTTGTTTTTTTTTTTTTTAACCAAGCTTAAAATGAAGCTTTGTGTTTGAAAGTAATAACAAGCTCAGACGAAGATGGTGGTTGTACATTATTCATTTAGAAAATATAAAAGTTCATTTTGTTTTGAAGCTAGTTATTAAACTGGAATAGCAGTTATACCCCTAAGAATGGGGCCCTTCTCTTGACATTCTTTTGTTGTTTAATTCTTTAGAATCTTAATAAATGTTTTTTTAATCCTGAGAAATTAAACGGTAGTAGACTTGTTAAGAATGAAACTGTAACCAAAATTT |
>XM_024447400.1 |
AGTGCTAGCGggcgccgagcgggagccgcgcgggagcagcgcagctacggcggcggcagcggcggcgcggTTGCGATTCCGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGCAGGCGCGTCGGGACGCCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGGTAGCTGGGCCCGCGTCCGCCGCCCGCATCCCCGCGCCGCCGCATCTCCTCGCCGCCTCCCGGGCTTCGGACCCCCGGTCTCGCCCCCGAAACATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCCCATTGGCCAGCTCGAGTAGACGAAGTTCCTGATGGAGCTGTAAAGCCACCCACAAACAAACTACCCATTTTCTTTTTTGGAACTCATGAGACTGCTTTTTTAGGACCAAAGGATATATTTCCTTACTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAAAGAAAAGGTTTTAATGAAGGTTTATGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGCAGCAACTAAACAATCAAATGCATCATCTGATGTTGAAGTTGAAGAAAAGGAAACTAGTGTTTCAAAGGAAGATACCGACCATGAAGAAAAAGCCAGCAATGAGGATGTGACTAAAGCAGTTGACATAACTACTCCAAAAGCTGCCAGAAGGGGGAGAAAGAGAAAGGCAGAAAAACAAGTAGAAACTGAGGAGGCAGGAGTAGTGACAACAGCAACAGCATCTGTTAATCTAAAAGTGAGTCCTAAAAGAGGACGACCTGCAGCTACAGAAGTCAAGATTCCAAAACCAAGAGGCAGACCCAAAATGGTAAAACAGCCCTGTCCTTCAGAGAGTGACATCATTACTGAAGAGGACAAAAGTAAGAAAAAGGGGCAAGAGGAAAAACAACCTAAAAAGCAGCCTAAGAAGGATGAAGAGGGCCAGAAGGAAGAAGATAAGCCAAGAAAAGAGCCGGATAAAAAAGAGGGGAAGAAAGAAGTTGAATCAAAAAGGAAAAATTTAGCTAAAACAGGGGTTACTTCAACCTCCGATTCTGAAGAAGAAGGAGATGATCAAGAAGGTGAAAAGAAGAGAAAAGGTGGGAGGAACTTTCAGACTGCTCACAGAAGGAATATGCTGAAAGGCCAACATGAGAAAGAAGCAGCAGATCGAAAACGCAAGCAAGAGGAACAAATGGAAACTGAGCACCAAACAACATGTAATCTACAGTAATAAAAAATATATCTCATTTTGGGCTCAAAGCATTAATCCAGTTACTGAAAAGAGAATACAAGTGGAGCAAACAAGAGATGAAGATCTTGATACAGACTCATTGGACTGAATTTCCCCCTTCCCCCCATTGATGGAAGAATGTTCCAGATTCTAAATTGAGGACTTCATTATTAATGGCATTACTGTGTTATGATTAACAAATTTCCTGTAAGGTACACACTACATACTAAGGTCGGCCATCATTCCTGttttttttttttttttttttttttAACCAAGCTTAAAATGAAGCTTTGTGTTTGAAAGTAATAACAAGCTCAGACGAAGATGGTGGTTGTACATTATTCATCTAGAAAATATAAAAATTCATTTTGTTTTGAAGCTAGTTATTAAACTGGAATAGCAGTTATATCCCTGAGAATGGGGCCCTTCTCTTGACATTCCTTTGTTGTTTAATTCTTTAGAATCTTAATAAATGTTTTTTTAATCCTGAGAGATTAAACAGTAGTAGACTTGTTAAGAATGAAACTGTAACCAAAATTTTAAAATAAAGTTTTTTTTAAAAAAAAAA |
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