RCPedia: Rtcs

Summary

Retrocopy Name	TMSB10P3	Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species	Homo sapiens
Coordinates (hg38)	chr9:15524365-15524714 UCSC
Coordinates (T2T)	chr9:15536271-15536620 UCSC
Coordinates (hg19)	chr9:15524363-15524712 UCSC
Strand	-
Parental Sequence	NM_021103.4
Parental seq. overlap	296 bp
Parental seq. overlap (%)	64.2%
Genomic Region	Intergenic
Retrocopy Summary	TMSB10P3, located on chr9:15524365-15524714, is a retrocopy of the parental gene TMSB10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	TMSB10
Full Name	thymosin beta 10
Also known as	MIG12\|TB10
Coordinate	chr2:84905656-84906671
Strand	+
Gene summary	Predicted to enable actin monomer binding activity. Predicted to be involved in regulation of cell migration and sequestering of actin monomers. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species	Scientific Name	Retrocopy
Chimpanzee	Pan troglodytes	TMSB10P2
Bonobo	Pan paniscus	TMSB10P2
Gorilla	Gorilla gorilla	TMSB10P2
Orangutan	Pongo abelii	TMSB10P2
Gibbon	Nomascus leucogenys	TMSB10P1
Green monkey	Chlorocebus sabaeus	TMSB10P2
Rhesus	Macaca mulatta	TMSB10P2
Baboon	Papio anubis	TMSB10P1
Golden snub-nosed monkey	Rhinopithecus roxellana	TMSB10P6
Marmoset	Callithrix jacchus	TMSB10P1
Crab-eating macaque	Macaca fascicularis	Without Homology
Mouse lemur	Microcebus murinus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dolphin	Tursiops truncatus	Without Homology
Horse	Equus caballus	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Egyptian rousette	Rousettus aegyptiacus	Without Homology
Sloth	Choloepus didactylus	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Related Sequence

>TMSB10P3
TAAGAAAATGGCACACAAACTAGACCTGGAAGAAATTGCCAGCTTGGATAAGGCCAAGCTGAAGGCCACAGAGATGCAGAAGAACACTCTGATGACCAAAGAGACCACAGAGCAGGAGAAGTGGAGTGAAATTTCCTGAGAGCCTCGAGGATTCTCTATGACTGTCATCTGTGAGCCCCGACTTGAGATGTGGAGGAACAGCCACCTGCAAGGTGGACATGCCCCACAAGCTGCGCTGTGAACCTGGGCTCTCCGAACCATGCCACCGACCTGTGAGTCTCCGAGGGGACCCGCAATGGGACTGCCAAATTCTCTGGCTTGCCCCAGGATATTATAGAAAATTATTTGTg

>NM_021103.4
GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCGGGCTCGGAACGAGACTGCACGGATTGTTTTAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAAACGGAGACGCAGGAGAAGAACACCCTGCCGACCAAAGAGACCATTGAGCAGGAGAAGCGGAGTGAAATTTCCTAAGATCCTGGAGGATTTCCTACCCCCGTCCTCTTCGAGACCCCAGTCGTGATGTGGAGGAAGAGCCACCTGCAAGATGGACACGAGCCACAAGCTGCACTGTGAACCTGGGCACTCCGCGCCGATGCCACCGGCCTGTGGGTCTCTGAAGGGACCCCCCCCCAATCGGACTGCCAAATTCTCCGGTTTGCCCCGGGATATTATAGAAAATTATTTGTATGAATAATGAAAATAAAACACACCTCGTGGCA

>NM_021103.4 

GTTTCTTGCTGCAGCAACGCGAGTGGGAGCACCAGGATCTCGGGCTCGGAACGAGACTGCACGGATTGTTTTAAGAAAATGGCAGACAAACCAGACATGGGGGAAATCGCCAGCTTCGATAAGGCCAAGCTGAAGAAAACGGAGACGCAGGAGAAGAACACCCTGCCGACCAAAGAGACCATTGAGCAGGAGAAGCGGAGTGAAATTTCCTAAGATCCTGGAGGATTTCCTACCCCCGTCCTCTTCGAGACCCCAGTCGTGATGTGGAGGAAGAGCCACCTGCAAGATGGACACGAGCCACAAGCTGCACTGTGAACCTGGGCACTCCGCGCCGATGCCACCGGCCTGTGGGTCTCTGAAGGGACCCCCCCCCAATCGGACTGCCAAATTCTCCGGTTTGCCCCGGGATATTATAGAAAATTATTTGTATGAATAATGAAAATAAAACACACCTCGTGGCA

Publications

PMID - Link	Title
No publications available for this retrocopy