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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name C11orf98P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:19705311-19710066  UCSC
Coordinates (T2T) chr9:19719228-19723983  UCSC
Coordinates (hg19) chr9:19705309-19710064  UCSC
Strand +
Parental Sequence NM_001286086.2
Parental seq. overlap 423 bp
Parental seq. overlap (%) 62.4%
Genomic Region Intragenic (SLC24A4)
Intragenic (SLC24A2)
Retrocopy Summary C11orf98P1, located on chr9:19705311-19710066, is a retrocopy of the parental gene C11orf98. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name C11orf98
Full Name chromosome 11 open reading frame 98
Also known as C11orf48
Coordinate chr11:62662817-62665210
Strand -
Gene summary This gene shares three exons in common with another gene, LBH domain containing 1 (GeneID:79081), but the encoded protein uses a reading frame that is different from that of the LBH domain containing 1 gene. [provided by RefSeq, Nov 2017]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes C11H11orf98P3
Bonobo Pan paniscus C11H11orf98P3
Gorilla Gorilla gorilla C11H11orf98P3
Orangutan Pongo abelii C11H11orf98P4
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>C11orf98P1
TGGGGAAAGATCAACTGGTCCCAAACAGAACTGAAGAAGAAGCTGTTCAACCACCTGTGGGTATTGAACTGGGAGTGGTGTCTGAGGTACTGGGTGGTTGGGGCTGTGATAGACCAGGGGCTGCTCATGCAGCACCACCTCAAGAAGTGGGCATCCAGTGCATGTACCAACATTACTCTGTCCAGGAAGAAGCACAGAAAACTTCTCCAGCAGATCCAGCTTGCCCAGAAAGAGAAGGCAGCCATGGAAGTGGAAGCCCCCCAAAACTAGCCAGGACTAGTGAGCCACAGCTCAAAAGGCAAAAGAGGACAAAAGCCCCCTAGGATGAAGAAATGAAGGACCTTTaTAAAATAAAAAAAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCTCTAGAAGATTCTCAACTGGATCCAGAAGGACTCAGTGGTTGTTTCAGAGGACTTTGGCAAAAGCAGTGCCCCTTTTCACTCACCAGATTTCCTCCTCCCTAAT
>NM_001286086.2
GAGCGGAAGTACGGACCGTGAACTGGAGTGGAATCGCGACTATGGGAGCTCCGGGGGGAAAGATCAACCGGCCCCGAACGGAGCTGAAGAAGAAGCTGTTCAAACGCCGGCGGGTGTTGAATCGGGAGCGGCGTCTGAGGCACCGGGTGGTCGGGGCTGTGATAGACCAAGGGCTGATCACGCGGCACCACCTCAAGAAGCGGGCGTCCAGTGCACGTGCCAACATTACACTGTCAGGGAAGAAGCGCAGAAAACTCCTCCAGCAGATCCGGCTTGCCCAGAAAGAGAAGACAGCCATGGAAGTGGAAGCCCCTTCAAAGCCAGCCAGGACTAGTGAACCACAGCTCAAAAGGCAAAAGAAGACAAAAGCCCCCCAGGATGTAGAAATGAAGGACCTTGAAGATGAGAGCTAAACCTCTTCCACTAGAAGATTCTCAACTGGAGCCAGCCTTCAGACTCAGTGGTTGTTTCAGAGGACTTTGACAAAAGCAAGGCCCCTTTTCACTCTCCAGATTTCCTCCTACCTAATGGCCTACTGACCTCCCCTAGAGGGATGTCTTTGGGAGGGAAGAAGGTACAGAAGAAAGATTGGAGAAGGGCCTCTCTAGCAGTCAACTCCATTTGTAATAAAGCCCTAGCACTCTGA

Publications

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