Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KCTD9P3
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Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:37476984-37480420  UCSC
Coordinates (T2T) chr9:37500696-37504132  UCSC
Coordinates (hg19) chr9:37476981-37480417  UCSC
Strand +
Parental Sequence NM_017634.4
Parental seq. overlap 2972 bp
Parental seq. overlap (%) 87.7%
Genomic Region Intergenic
Retrocopy Summary KCTD9P3, located on chr9:37476984-37480420, is a retrocopy of the parental gene KCTD9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KCTD9
Full Name potassium channel tetramerization domain containing 9
Also known as BTBD27
Coordinate chr8:25427847-25458433
Strand -
Gene summary Enables cullin family protein binding activity; identical protein binding activity; and protein self-association. Predicted to be involved in intracellular signal transduction; protein homooligomerization; and protein ubiquitination. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes KCTD9P3
Bonobo Pan paniscus KCTD9P3
Gorilla Gorilla gorilla KCTD9P3
Orangutan Pongo abelii KCTD9P3
Gibbon Nomascus leucogenys KCTD9P3
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

The Genotype-Tissue Expression project - (GTEx)

Massive Mining of Publicly Available RNA-seq Data from Human and Mouse - (ARCHS4)

Related Sequence

>KCTD9P3
ATGTGGGACAGAGTGCGTGTGTGGTGTGTCCCCAAGGGCAGGAATTTGGCGAAGGGAGGTGAATCAGAGTGGGTGGAGGGAGGGGAAGGGCGGGAGGAGAAAAAGGTGGGAAGAGGACCAGGTGGGAGGGTGGCAGCTCACTCAGGAACCCGCGGGGGCAGCGCAATGAGGCGGGTGACCCTGTTCCTGAACGGCAGCCCCAAGAACGGAAAGGTGGTTGCTGCATATGGAACTTCATGTGATTTGCTGTCTGTGGCCAGCAGTAAACTCGGCATAAAAGCCACCAGTGTGTATAATGGGAAAGGTGGACTGAATGATGATATTGTTTTGATCAGGGATGATGATGTTTTATTTGTGTGTGAGGGAGAGCCATTTATTGATCCTCAGACAGATTCTAAGCCTCCTGAAGGATTGCTAGGATTCCACACAGACTGGCTAACATTACATGTTGGAGGGCAGTACTTTACAACTACCTGGAGCACTTTAGTGAATAAAGAACCTGACATTATGCTGGCCCACATGTTTAAGGACAAAGGTGTCTGGGGAAATAAGCAAGATCATAGAGGAGCTTTCTTAATTGACCAAAGTCCTGAGTACTTTGAACCCATTTTGAACTACTTGCGTCATGGACAGCTCATTGTAAATGATGGCATTGATTTATTGGGTGTGTTAGAAGAAGCAAGATTTTTTGGTATTGACTCATTGATTGAACACCTAAAAGTGGCAATAAAGAATTCTCAACCACCAGAGGATCACTTACCAATATCCCGAAAGGAATTTGTCCGATGTTTGCTAGCAACTCCAACCAAGTCAGAAATGCGATGCCAGGGTTTGAACTTCAGTGGTGCTGAACTTTCTCATTTGGATCTTCGATACATTAACTTCAAAATCACCAATTTAAACTGCTGCAATCTTGCACATGCAAATCTTTGCTGTGCAAATCTTGAATGAGCTGATCTCTCTGGATCAGTGCTTGACTGTGCAAATCTCCAGGGAGTCAAATGCTCTGTTCTAATGCAGAAGGAGCATCTCTGAAACTGTGTAATTTTGAGGATCCTTCTGGTCTTAAAGCCAATTTAGAAGGTGCTAATCTGAAAGGTGTGGATATGGAAGGAAGTCAGATGACAGGAATTAACCTGAGAGTGGCTACCTTAAAAAATGCAAAGTTGAAGAACTGTAGCCTCAGAGGAGCAACTCTGACAGGAACTGATTTAGAGAACTGTGATCTGTCTGGGTGTGATCTTCAAGAAGCCAACCTGAGAGGGTCCAACGTGAGGGGAGCTAGATTTGAAGAGATGCTGACACCACTACACATGTCGCAAAGTGTCAGATGAGAATTTTAGGGGCTGAAGGAAGATGTGCAAGATGAAAATGTTTTCCTTATCGCTTTTCTTTCTCCACCCACTCAGTTGTCTAGAAGAAATAACACTGTCAGCAAATTTTAAAAAATCATTTAGAGGATTATGCTTGTTTTCAGCATGCATAAGGGAAAAAACTGACTTTTTTTTCCATATTCTGATTTTTAACGCAAAAGCACTCATTCAATAGATGTAGGGAAACTAGATATTGCTGCCTTTTGAATGGGGTAGGGGAGTTTACCTGGTTTTATGACCACGAATAGTATCTATTGTATTTGCTTTTAAATAGGCATGATGTGGAAATGCCCTCTTGGTTTGAGATGCATTTGAGGATTTTAATTTATGGAAAGCACAACATATGCAATTATATTTATTGAATACCTAGATGCAGTATGGATATTTAAATTGTTAAAACTTTATGAAAACTTGGAAAAGGTTGCTCAGGTTTATAAATAGCTTCAGTGATGCCTCCCCTCTTTAAATACCTGTCACACCATATGAATATGGTGAGATCAGACTCCCTAAAACTCTTTTCAGGTTCATTTTTATGTTTACTTTTTAGAACAAAATGTAGCTAAATTAAAGTAATATCCAGTTCTTACTGATTGAGACAGAGTGGAAAGAAAGACATCGTTGTACATCACCGTCATTCCAAAGGTACAGCGGAACTCCAGATGGAGGAAGAACTTACCTATCACTACAACACTTGTAAATGAGCATTTCTCAGAATTTCATTCTAGGGAAGTTCCACTCAACACCAGACCAAGAAATTCTATCTATTTATACTATCAGCCTAGcTTACCCTAGTTTTCTAATACAATCATCACAAGCATAGGAAGATACTTCAAAACCAAAACTCCAAGGTGCATCATTAGTATTCGTTTAATTCAAATACCAAATAGTTTACATAGGGCCAGCTTAGAAATAGACATTAAATCCAGATCTACTGCAATCAAAGCTTATACTATATGAATGAAGATGGTAGAGTTGCCTGTTAAAAGGCAATGTAATATAATTGCAGCTAGAATCCTACAGTGGAGAATGAGGAATTTTAAACAGACATTTGATTACAGCCACCAAAAAATATATATAAAGTAAAAATAAAGGCATTTGGCTGGCCCAAGATGTAATACCAATCAGTCAGTACCTGTGATTCTTTCACTTATATTTTTTATTTTTTTAAAAACAAATTTTAGCCCAATTTTCTTGAGTCATTATCTCTCCGCAGCAGCAGAGGAAGGGCCTGTATTCCCTACCAATGGCCTGGTGTCCTTATGTCTACCCCAAGAGCAGGGATATTAGCTGTGTCCAAATGGGTTCTAAATTCTACAGACTCATCAACATGAGGCAAGAAGTCATTGAAAACCACTTTTGTCTCCTTTGGGAGAATGACATATCTTTAGTATTTATGTAGCTTATTCTTCTATATCTACATATGCAAAGCTTTCCTTAACAGTAAAGGGTACATATGCATAGTGGGAGAAGATCAGACCTTTACGAGTGAAGGAAAGCAACTTCAGAAATGAATTATTTTCTTTGCTTTATTATTTTTACCAAGACAGTGAAGTATTGTATGGGGAGATAATCTATTTTCATAATCAATATGTGCCTAAATTATATTTAAATTATTTCACTCTGTACTATATTTTTAGGAATTATAGAATGTGTTATTCATTCACTTAAAGGTACTTCTGTAGAAATAACCTAAAACTGCAGAAGGATCTGAAAGATCTAAACATGTTGTGCTTAGAAACTGCAGATTTTAGATCTAATGTATA
>NM_017634.4
GAGGACCGGCCGAACCTTGGGTGTGGGACAGAGTGCGTGCGTGTGGTGTGTCCCCAAGGGCAGGAAGGTGGCGAAGGGAGGCGAATCCGAGTGGGTGGAGGGAGGGGAAGGGCGGGAGGAGAAAAAGGTGGGAGGAGGACCAGGTGGGAGGGTGGCGGCTCACTCAGGACCCAGCGGGGGCAGCGCGATGAGGCGGGTGACCCTGTTCCTGAACGGCAGCCCCAAGAACGGAAAGGTGGTTGCTGTATATGGAACTTTATCTGATTTGCTTTCTGTGGCCAGCAGTAAACTCGGCATAAAAGCCACCAGTGTGTATAATGGGAAAGGTGGACTGATTGATGATATTGCTTTGATCAGGGATGATGATGTTTTGTTTGTTTGTGAAGGAGAGCCATTTATTGATCCTCAGACAGATTCTAAGCCTCCTGAGGGATTGTTAGGATTCCACACAGACTGGCTGACATTAAATGTTGGAGGGCGGTACTTTACAACTACACGGAGCACTTTAGTGAATAAAGAACCTGACAGTATGCTGGCCCACATGTTTAAGGACAAAGGTGTCTGGGGAAATAAGCAAGATCATAGAGGAGCTTTCTTAATTGACCGAAGTCCTGAGTACTTCGAACCCATTTTGAACTACTTGCGTCATGGACAGCTCATTGTAAATGATGGCATTAATTTATTGGGTGTGTTAGAAGAAGCAAGATTTTTTGGTATTGACTCATTGATTGAACACCTAGAAGTGGCAATAAAGAATTCTCAACCACCGGAGGATCATTCACCAATATCCCGAAAGGAATTTGTCCGATTTTTGCTAGCAACTCCAACCAAGTCAGAACTGCGATGCCAGGGTTTGAACTTCAGTGGTGCTGATCTTTCTCGTTTGGACCTTCGATACATTAACTTCAAAATGGCCAATTTAAGCCGCTGTAATCTTGCACATGCAAATCTTTGCTGTGCAAATCTTGAACGAGCTGATCTCTCTGGATCAGTGCTTGACTGTGCGAATCTCCAGGGAGTCAAGATGCTCTGTTCTAATGCAGAAGGAGCATCCCTGAAACTGTGTAATTTTGAGGATCCTTCTGGTCTTAAAGCCAATTTAGAAGGTGCTAATCTGAAAGGTGTGGATATGGAAGGAAGTCAGATGACAGGAATTAACCTGAGAGTGGCTACCTTAAAAAATGCAAAGTTGAAGAACTGTAACCTCAGAGGAGCAACTCTGGCAGGAACTGATTTAGAGAATTGTGATCTGTCTGGGTGTGATCTTCAAGAAGCCAACCTGAGAGGGTCCAACGTGAAGGGAGCTATATTTGAAGAGATGCTGACACCACTACACATGTCACAAAGTGTCAGATGAGAATTTTAGGGGCTGGAGGAAGATGTAAAAGATGAAAATGTTTTCCTTATCACTTTTCTTTCTCCACCCACTCAGTTGTCTAGAAGAAATAACACTGTAAGGAAATTTAAAAAAAAAACATTTAGAGGATTATGCTTGTTTTGAGTGGTGCATAAGGGAAAAAACTGACTTTTTTTCCATATTCTGATTTTTAACAGAAAAGCACTCATTTAATAGATGTAGGGAAACTAGATATTGCTGCCTTTTGAATGGGGTAGGGGGGTTTACCTGGTTTTATGACCAGGCATAGTATCTATTATATTTGCTTTTAAATAGGCATGATGTGGAAATACCATCTTGGTTTGAGATGCATTTGAGGATTTTAATTTATGGAAAGCACAACATATGCAATTATATTTATTGAATTCCTAGATGCAGTATGGATATTTAAATTGTTAAAACTTTATGAAAACTTGGAAAAGGTTGTTCAGGTTTATAAATAGCTTTAGTGATGCCTCCCCTCTTTAAATACCTGTCACACCGTATGAATATGGTGAGATCAGACTCCCTAAGACTCTTTTCAGGTTCATTTTTATAATGTTTACTTTTTAGGACAGAACAGTAGCTAAATTAAAGTAATATCCAGTTCTTACTGATTGAGACAGAGTGGAAAGAAAGACATCATTGTACATCACTGTCATTCCAAAGGTACAGTGTAACTCTGGATGGAGGAATAACTTACCTATCACTACAACACTTACAAATGAGAATTTCTCAGAATTTCATTCTAGGCAAGTTCCACTCAACACCAGATCAAGCAATTCTATCTATTTACACTATTAGCCTAGTTTTCTCATACAGTCATCACAAGCATAGGAAGATACTTCAAAACCAAAAAAACCAAGGTGCATCATTAATATTCATTTAATTCAAATACCAAATAGTTTACATAGGGCCAGCTTAGAAATAGATACTAAATCCAGAGCTACTGCAATCAAAGCTTATATGAGTGAATATGGTAGAGTTGCCTGCTAAAAGGCAATGTAATATAATTGCAGCTAGAACCCTACAGTGGGGAATGAGGAATTTTAAACACACATTTGATTACAGCCACCAAAAAAATAGACGTAAAAATAAAGGCATTTGGCTGGTCCAAGATGTAATTATCAATCAGTCAGCACCTGTGAttcttttacttatttttttgtggttttttttttttAAACAAATTTTAGCCCAATTTTCTTGAGTCATTCTCTCTCTGCAGCAGCAGAGGAAGGGCCTGTACCTCCCTACCAATGACTTGGTGTCCTTATTTTCTACCCCAAGAGCAGGGATATTAGCTGTGTCCAAATGGGTTCTGAATTCTACAGACTCATCAACATGAGGCAAGGAATCATTGAAAACCACCTGTGTCTCCTTTGGGAGAATGACATATCTTTAGTATTTACGTAGCTTATTCTTCTATATCTACATATGCAAAGCTTTCCTTAACAGTAAAGGGTACATATGCATAGTGGGAGGAGATCAGACCTTTACAAGTGAAGGAAAGCAACTTCAGAAATGAATTATTTTCTTTGCTTTATTATTTTTACCAAGACAGAGAAGTATTGTATTGAGAGATAATCTATTTTCATAATCAATATGTGCCTAAATTATATTTAAATCATTTCACTCTGTACTATATTTTCAGGAATTACAGAATGTGGTATTCATTCACTTAAAGGTACCTCTGTAGAAATAACCTAAAACTGCAGAAGGATCTGAAAGATCTAAACATGGTGTGCTTAGAAACTGCAGATTTTAGATCTAATGTATACTGCATTAATAAATGATATAAAGTGTTTGTTGAAAAGGAGTTTCTTCTCTTCCTTTTGAAAATCATCACTTTCTGTATTTTGCTTACATTTCTTCAATATGTGTTGACAACCAGCCCTGTGGTTCTGGGTAGCAAAGGAAATACAGTATAACTTAATTTGTTATGGATTAGTCTTTTTGAAAGTACCATTAAAGTAAATTTATTTCTTTAAA

Publications

PMID - Link Title
No publications available for this retrocopy