Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ARMC8P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:38451851-38454366  UCSC
Coordinates (T2T) chr9:38476030-38478545  UCSC
Coordinates (hg19) chr9:38451848-38454363  UCSC
Strand -
Parental Sequence NM_001363942.1
Parental seq. overlap 1832 bp
Parental seq. overlap (%) 36.9%
Genomic Region Intergenic
Retrocopy Summary ARMC8P1, located on chr9:38451851-38454366, is a retrocopy of the parental gene ARMC8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ARMC8
Full Name armadillo repeat containing 8
Also known as GID5|HSPC056|S863-2|VID28
Coordinate chr3:138187248-138298389
Strand +
Gene summary Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in cytosol and nucleoplasm. Part of ubiquitin ligase complex. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ARMC8P1
Gorilla Gorilla gorilla ARMC8P2
Orangutan Pongo abelii ARMC8P1
Gibbon Nomascus leucogenys ARMC8P2
Green monkey Chlorocebus sabaeus ARMC8P1
Crab-eating macaque Macaca fascicularis ARMC8P1
Rhesus Macaca mulatta ARMC8P1
Baboon Papio anubis ARMC8P1
Golden snub-nosed monkey Rhinopithecus roxellana ARMC8P1
Marmoset Callithrix jacchus ARMC8P1
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ARMC8P1
CACATGTACCTGGGCCAGAATGAATGTATATGTGTGTATGAGGGATACCTCACATTTTTCTTTCCTCATTTTGTGTGAAAATGTCTTTTCTACAGATTTTCCAGGTTTTAAGCATTGCTTGCTGTACAAAAACTTTACTGAATTATATAAAGTTTGAATGAAATGTTATTTTAAATACAAAACAATTGTTAAGTGTTCAATAAAGGTTATGCTGAATTTTGGTCAGATGAAAACTTGTAAGTAAAAAATATATACATGTCTGAACCTgGTACAGAAACCAGTTTCATTTGATTCCTTCTATTTGCACAAGTTGCCTTGGACTGCAGGGAGCTGTTGTGCAAAAGTAATTTAGTAGGCTTAGATCTCAAATTCACCTTGAGAACATTTTTTGAGGTAGTAATTTCCTCAGAAGATTACTGTGTTTTGTTTTAGTTTTTTCTTAGCTACATGGACTCTTTATTAGAACAATCAGTCGTTTTCCTTTGGACCTACAATCTTTTGCCTATGCTGCAGCCACTTTGTGAGTGAGAATGAATATGTCTGTGTGAACACACAGCCAGTCCTGTCACTCCAAAGGAGCTACTGTTTACAGATGCCACAGTGACACCGCACCTCATGGCACTGCTTAGCAGGTTCCACTATATCCAGGAGTACATCGGTCGGATCGTCTCACACTGCTGTAAAGGGGCCAGATCATCAAACAATTTTATTTAGCCGTGGTGCAGTTAAGAATATTGCTCACCTACTAACCTCATTTTCTACAAAGTTCAAATGCAAGCACTGAAATGTTTCTCAGTTTTACCCTGGTAAATGTTTTAGTTGATGGAGAATTGTTATCACAGATTTTTGTGACGATGTTACAGAGGGATAAGCATATTGAGATGCAGCTTACATCAGCAAAATGTTTAACTTACATGTATACAGCTGGAGCAATTCAGACAGATAACAACTGTATTAAAGACATTGCCTTATTTGGTTCAAACATGCAGTAAGAAGAGATTACTAGAGGAGAGAGTTAAAGGAGCTGAGACACTTGCCTATCTGATTGAACCAGATATTGAGCTACAGAGAATCGCTAGTGTAACTGATCACCTCATCGCCATGTTTGCTGACTATTTCAAGTATCCCAACTCATTGAGTGCCATCACTGATAGTAAAAGGCTTGATCATGATTTAAAACATGCTCATGAACTCTGCCAGGCTGCATTCAATCTCTACGACTCTCTTAGAGCAAATGATGAAGACATTCAGAAGAAAAGCCCTGAGACTGAAAATATGATGGACTGAATTGTGACTGGCTTGTCTGAGTCTAGTGTCAAGGTGCGGTTACCTGCTCTCAGATGTTTGCACCATTTATCCAGATCTGTGCAGCAGCTTCAAAACAGTTTCTAGGATCACACTCTGTGAAAACCTTTAATGAAGGTTTTACAAAATGCACCAGATGAAATCCTAGTAGCAGCATCTTCCATGGTATATAATCTTCTTGAATTTTCTCCAAGGAAAGAGTCAATTTTAAAATCAGGAGTTGTAAAGCTACTTTGTGGATTAACCCAGAGTGAAAATCCTGCTTTATGAGTGAGCAGAATTTGGGATTTAATGAATATGGCATTTCAGGCTGAACAAAAAATAAAAGCAGACATGTTACAAAGCTTGAGTGCTGAACAGCTATTCTGGTTATTATCAGATTCAGATTTGAATGTCCTGATGAAGACACTGGGACTTCTTAGAAATATCCTCTTGACCTGGCTTCATATAATAAAATAATGAGTACTCATGGAAAGTAAATTATGCAAGCTGTCATCCTTATTCTGGAAGGGGAACATAACTTTAAGGTCAAAGAGTAGATACTGTGCATCTTAGCCAATATAAAAGATGAGACAACAGCAAAAGAATGTATTATGACCAATGATGATATCCTTCAGAAAATCAAATATTACATGGACCATTCACATGTCAAACTGCAGCTTCCAGCTATGTTTTGTATATCAAACCTCATATGGAATGAAGAAGAAGGTTCACAAGAATGCCAGGATAAATTATGAGACATGGGCATCATAGATATTCTACATAAACCGAGTCAGCCACCAGATTCAGACCTTTGTGACAAGGCAAAGATGGCACTGCAGCAGTACCTGGCATGATGAGAGCGCCCCTAGGCACCTGTGAGCATCCTACATCCTTGTTTAAGAAAGTACAg
>NM_001363942.1
GCTTCCACCTCTAACCCAGGCTCAGAGTAGCTGCTGTTTCTGAGAGAACGATTCGTAGGACAGCCCCTGACGCCATTCCCTTTTGCCCTTCTTTCTGCGGGCCTTTCCGGTACTTGAGCGGTGTCCAGAGCGTGGCCAGTTCTCGTCTATCTGGCTGCCTTTAGGGAGCGGTGCCTAGCGTTGGCCAATAGTTGGCTGTCGAAAGTGCCGGCCCCCGCGCCGGCGCCTGCAGCAGCCGGGTGGGAAGGCTCAAGATGGCGTGCTTGTTGGAGACCCCAATCCGCATGAGCGTCCTTTCGTTTTTTTAAAGAAAAAGACGACTTTCACCTTTCACTATGTTGCTCTTgaaccaggaccaggaatgaaagttactgggagataacttcgaaggattttgcaacaaattcgagctgtccgactctgagaatgAGACATGAAAAATGCTGTAATTGGAAACAACAAGCAGAAAGCCAATCTCATTGTTTTAGGAGCTGTTCCAAGATTGTTGTACTTGCTTCAGCAAGAAACCTCAAGCACAGAGCTGAAAACTGAATGTGCAGTGGTGTTGGGAAGTCTTGCTATGGGTACTGAAAACAATGTCAAGTCTCTACTGGACTGCCATATTATCCCTGCCTTATTGCAAGGACTACTGTCCCCAGACCTGAAGTTTATTGAAGCTTGCCTCCGATGCCTGCGTACCATCTTCACCAGTCCTGTCACTCCAGAGGAGCTACTGTATACAGATGCCACAGTGATACCACACCTCATGGCACTGCTTAGCAGGTCCCGCTATACCCAGGAGTACATCTGTCAGATCTTCTCACACTGCTGTAAAGGGCCAGATCATCAAACAATTTTATTTAACCACGGTGCAGTTCAGAATATTGCTCACCTACTAACCTCACTGTCCTACAAAGTTCGAATGCAAGCACTGAAATGTTTCTCAGTTTTAGCTTTTGAAAACCCCCAGGTATCGATGACCCTGGTAAATGTTTTGGTTGATGGAGAATTGTTACCACAGATTTTTGTGAAGATGTTACAGAGGGATAAGCCTATTGAGATGCAGCTCACATCAGCAAAATGTTTAACTTACATGTGTAGAGCTGGAGCAATTCGGACAGATGATAACTGTATTGTATTAAAGACATTACCTTGTTTGGTTCGAATGTGCAGTAAGGAGAGATTACTAGAGGAGAGAGTTGAAGGAGCTGAGACACTTGCCTATCTGATTGAACCAGATGTTGAGCTACAGAGAATCGCTAGCATAACTGATCACCTCATTGCCATGCTTGCTGATTATTTCAAGTATCCCAGCTCAGTGAGTGCCATCACTGATATTAAAAGGCTTGATCATGATTTAAAACATGCTCACGAACTCCGCCAGGCTGCATTCAAGCTCTATGCCTCTCTTGGAGCAAATGATGAAGACATCCGGAAGAAGATCATTGAGACTGAAAATATGATGGACCGAATTGTGACTGGCTTGTCTGAGTCTAGTGTCAAGGTGCGGTTAGCTGCCGTCAGATGTTTGCACAGTTTATCCAGATCTGTGCAGCAGCTTCGAACCAGTTTCCAGGATCATGCTGTTTGGAAACCTTTAATGAAGGTTTTACAAAATGCACCAGATGAAATCCTAGTGGTAGCATCTTCCATGCTGTGTAATCTTCTTCTTGAATTTTCTCCAAGCAAAGAGCCAATTTTGGAATCAGGAGCCGTAGAGCTACTTTGTGGATTAACTCAGAGTGAAAATCCTGCTTTACGAGTGAATGGAATTTGGGCTTTAATGAATATGGCATTTCAGGCTGAACAAAAAATAAAAGCAGATATTTTACGAAGCTTGAGTACTGAACAGCTATTCCGGTTATTATCAGATTCAGATTTGAATGTGCTGATGAAGACATTGGGACTTCTTAGAAATCTCCTCTCCACTCGTCCTCATATAGATAAAATAATGAGTACTCATGGAAAGCAAATTATGCAAGCCGTCACTCTTATTCTAGAAGGGGAACATAACATTGAGGTCAAAGAGCAGACACTGTGCATCTTAGCCAACATAGCGGATGGGACAACAGCAAAAGATCTTATTATGACCAATGATGATATCCTACAGAAAATCAAGTATTACATGGGCCATTCACATGTTAAACTGCAGCTTGCAGCCATGTTTTGTATATCAAACCTCATATGGAATGAAGAGGAAGGTTCACAAGAACGCCAGGATAAATTACGAGACATGGGCATCGTAGATATTCTACACAAACTGAGTCAGTCACCAGATTCAAACCTTTGTGACAAGGCAAAGATGGCACTGCAGCAGTACCTGGCATGATGGGAGTGCCCCTGGGCACCTGCGAGCATCCCACCTCCTTGTTTAAGGAAGTACAGGAACCAGCCTCATTTGATTCCTTCTATTTGCACAAGTCACCTTGGACTGCAGGGAGCTGTTTTGCAAAAGCAGTTTAGTAGGCTTAGATCTCAAATTCATCTTGAGAACATTTTTTTGAGGTAGTAATTTCCTCAGAAGACTCTTGTGTTTTGTTTTGGTTTTTTTTTCTGAGCTACTCGGACTCTTTATTAGAACAATCAATCATTTTCCTTTGGACCTACAATTTTTGCCTATGCTGCAGCCACTTTGTGAGTGAGAATGAATATGTCTGTGTGAACACACAGGCATGCGTGTGTATGTGCACGTACATGGGCCAGAATGAATGGATGTGTGTGTGTGAGGGATACCTCAGATTTTTCTTTTCTTATTTTGTGTGAAAATCTCTTTTCTACAGATTTTCCAGGGTTTAAGCATTGCTTGCTGTATAAAAAACTTTACTGAATTATATACAGTTTGAATGAAATGTTATTTTAAAAACAAAACAATTGTTAAGTGTTCCATAAAGGTTATGTTGAATTTTGGTCAGATGAATATTTGTAAGTAAAAAATATATGCATTTCTGAACCTCAACTTACATAGATTTTCTTTATATaaaaaaaaagaaaaaaaaagaaaaaGTTGGCTATAGTTGGCCTGATTAACAGGCACTATACATGGTGCTGTGCAAAATAGTAAGCTAGCATCTTACTGCCGTCAATATTAGCAGGTACAGAGCCTTTTTTCATCCTAATTCAGTAAGTTCTCAGGCTTCCAAGTCAAATGGAGAAGTAAAGTGAGGCAACAGATTCACCATAGGCTTTTTGAAGCATCAAAGGGAAATATAACTACTGATAGTGAAAGCCCAGCCATGACCCAGATGGGCTTACCCTTGACAGGAACTGGGGACCAAGAGCCTCCCAATTGCCCTAACTCCTGTCATTGGTATTAGCAATATCTGGCCAGATTTAGAACCAGTCATGGAAACTTGTGCTCAAACTAAAAGTAGGTCATCACTTCCCAGAAACAGAATACCTTGTGCTTCCTGAAACAGCATATATCACTGTGAAACTAAAGAATATTCTACAGACACCCCTGTAGAAAGAAACAAAGAACAGGATAGTTTAGAAAGCTTTCTGTTAGCTGTATTCAGCAAATTTCATACTAGTTGCTCAGGACTGCTAGTTGGTATGCTTTTGTAAAACGAGATTGAAATTTAATAAAAGATGCAACTAAAATCTTTCCTGCATGAAGCTAAAAGCACTCAAGTTGAGAGAGGGGCAAGGGAATCTCCCCAGGATGACTGAAGATGACTTCTTTTTACAGCAAGTACTGTTAGCCTTTCTGCACCCCTTAGCTTGGCCCCTGCTCCAACTTCTGGGTCAGCAGCAAGGTGAACTCAACAGAAGTTGCTCTTGACTGTTTGAAGGTAGAAGCAGCCTACCTTTTCTCTTTGCTAAAAGAAGGTCAAAGGCTTCGCAACCAGGATGCAAGGTCTGCGGTCCAGAAGCTTGCGGTGAGTGTGTGCCACTGATGGAGCTCCAAGCCCACCCACCAGCCACTCCTGATGGGGTTGCTCACACTGCAGCTGCCCTATCACCACCCTGCACGTTCCTTGGAAGATTTAAATGTTTGGTTGCAAATGAATGTTTTAAAAATGTATTTAATGCAATTTTTCCTGCTCTCAACATGACCACCCAAGATTCAAACACAGAGACTTCCAAGTTACTATTTTTTCAGAACATCACCGATTTTAAAATCTGTCACAACAGGACTTGGTTTTGTGCAGATATCAGAGTGCTAATGTGAGAAACCCAGTTAAAAGAAAACTTAGTTTATTGGGAAGAAAGCCTCAGGCCCACTCGTTTCTAGAACTGTGAAAATATCCTTGGTTGGCATTTTTAACACAAAACACTATAGTGTTGGTATTAAATAGTACTAGGTAAATATAAAGAAACCAATAATGAATTGCTGAGACAATCTTGAACCCAAATAGCATTAGAAAGCTGAAGGCCCAATGAAATAACACTTTCACACTTAAACTCTGTGGATAAATTTTGCCTGTGGGTATAAACAGATGGTCAAATTAAAAATGCTTTACTATAATTAACTTTTCTGATTTGAATGAAGGGAAATGTATTTATTGAAACAAAGCTGTTTGCTGCTTTATGCAGGTGCAGTGTTCAGTCAGCAAGGAAGTGGGAAGAGTGGACATGGTATTGTGTCTACACCCAAGTTCTTAACTAAGCTTCTCGCTCTAATACTGCATTCTGTTTCTCCTTTTGTGCCCTGATTGTAATCCAAAATTTATGAACTAGAAAAGAATGTCCAATTTAATAAGTTGCATTTTTTTTTCTTTAAGCACTTTATTCAGAACAATACATGTTCTTCTGGTAGTGTTTGGATAATATGATTTTAACACATGCTAATAAAAGCCAAGAAAAATCATGGCAACTTCTAAAAA

Publications

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