Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RBM17P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:39154069-39155665  UCSC
Coordinates (T2T) chr9:39167466-39169062  UCSC
Coordinates (hg19) chr9:39154066-39155662  UCSC
Strand +
Parental Sequence NM_032905.5
Parental seq. overlap 1227 bp
Parental seq. overlap (%) 35.1%
Genomic Region Intragenic (CNTNAP3)
Retrocopy Summary RBM17P1, located on chr9:39154069-39155665, is a retrocopy of the parental gene RBM17. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RBM17
Full Name RNA binding motif protein 17
Also known as SPF45
Coordinate chr10:6089034-6117447
Strand +
Gene summary This gene encodes an RNA binding protein. The encoded protein is part of the spliceosome complex and functions in the second catalytic step of mRNA splicing. Alternatively spliced transcript variants have been described. Related pseudogenes exist on chromosomes 9 and 15. [provided by RefSeq, Mar 2009]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes RBM17P1
Marmoset Callithrix jacchus RBM17P1
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RBM17P1
AAAAAGATGCCCCCATACGATGGCCTGAGAGTGGAGACCAGTGACTCAAAAGCAGAAGGCTGGTTCCAAAACATCAAACTTCTGCAGTCTCAGCTTCAGGTGAGGAAGGCAGCTCTCACTCAGGGAAAGAGCCAAAGTTAGAAACAGTGCAGCTCTTGCCAGTCATTGACCTAAGGCCAGGCGGCTCCTCAGATGACCTGCAAATTGGGGACACACCACGGCATGCAGCAGCTGGGCTGAAGGATCCTGCTCCCAGTGGATTTTTGCAGGGGACGTTCTGATTCCCTTAGCTGACGAATATGATCCTATGTTCCCTTATGATTATGAGAAAGTAGTGAAGTGCCAGAGAGAGGAACGACAGACACAGCAGGAGCTAGAAATATGAAAGGAAATAGAAGAAAGGGAAAAGAGGCCTGAAGACAGGCAAGAAGTTAGGGGAGTTCTGATCAAGGCGACCAAATCCAGATTCTGATGAAGGGGAAGATTAGGAGGGAGAGAGGAGGAAAAGTAGTAGGGTGGAGCTGCCATTGCCCTTCCCACTTCTCTGGTAGAGAAAGACCAAGAGTCACCCCGAGATTTTCCTTATGAAGAGGATTCAAGACCTCAGTCATGGTCTTCCAAAGCAGCCATTCCTCCCCCAGTGAAGGAGGAACAGGACAGACTGAGATCTCCAAACCGGCCTAGCAGCTCCTTCCTCGCTAACGTGGTGGGAACGGTGGCGCACAACATCATGCAGAAGCGCGGCTTCCGGGAAGGCCGGGGCCTCGGGGAGCACCTGCAGGGGCTGCGAGATGCCTTTCCGGTGGGGAAGACTAGCAGATCAGGCGGCAAGATCATCGTGGGCGACGCCGCAGAGAAAGATGCATTGAAGGATCAGGTACAAATCCACTGACTGAAATACTTGAGTCCTACTAAGGTGGTCCTACTAAGGAACATGGTTGGTGAAGGGGAGGTGGAAGAAGACTTGGAAGTTGAAACCAGAGAAGAATGTGTGATGACATATTTTTCAGTTGATATGGTTTCCTATGAGACATAGCATCATTAAGGATAAAATAAGTGAAACTGAAAAGAGTATAGTTAATCTAGTTTTCATAATGAGTTCATTCTGTTATGTTTCTTTTTCTTTTCCATTGTCAATTTATATTGGCTCAGAGAAAACAGGCTTGATGGATAAAGTCCATGGTATTTCCCAATTTTGCCATGAAAAATATGGCAAAGTTGGAAAACGTGTGATATGTGAAATTCTTGGTGTCCCTGATGATGAAGCAGTACAGACCTTTTTAGAATTTGAGAGTTGAGTCAGCAATTAAAGCTGTTGTTCACTTGAATAGAAGGTATTTTGGTGGACAGGTGGCAAGAGGATGTTTTTACATTTGTACAAATTCAGCATCTTGGATTTGGTGGAACAAGTTTGATTTTAAGAACTAGAGCATGAGTCATCTCTGGTGACCCTTAAATGACCAGCAGGCTGAGAAAAGAAGGAAAAAGGTCACAGCCTCCATGGCTGTTAGATACTGAGACTCTTGGAAGGACCTCCAAGGTATACGTTGATTGATCCCTTTTCATTTTGTGGTTTTTAAATATTGTATAAAAATCC
>NM_032905.5
AGCCCGCGCTCCCTGACCCCGCGCCGCCGAGCGCCCTGAGGACTCAGCGAAGGGTGGGCGCCGCCGAGGCCTCCTGCCGCTGGCGGGTTTCCGCGGAGTGCCGCCCGGCTCCGCTCTGCCGCCGGCGCGGCTCATGGGCAGAGTCGGCCGGGCGGGCCGGCATTAAACTGAAGAAAAGATGTCCCTGTACGATGACCTAGGAGTGGAGACCAGTGACTCAAAAACAGAAGGCTGGTCCAAAAACTTCAAACTTCTGCAGTCTCAGCTTCAGGTGAAGAAGGCAGCTCTCACTCAGGCAAAGAGCCAAAGGACGAAACAAAGTACAGTCCTCGCCCCAGTCATTGACCTGAAGCGAGGTGGCTCCTCAGATGACCGGCAAATTGTGGACACTCCACCGCATGTAGCAGCTGGGCTGAAGGATCCTGTTCCCAGTGGGTTTTCTGCAGGGGAAGTTCTGATTCCCTTAGCTGACGAATATGACCCTATGTTTCCTAATGATTATGAGAAAGTAGTGAAGCGCCAAAGAGAGGAACGACAGAGACAGCGGGAGCTGGAAAGACAAAAGGAAATAGAAGAAAGGGAAAAAAGGCGTAAAGACAGACATGAAGCAAGTGGGTTTGCAAGGAGACCAGATCCAGATTCTGATGAAGATGAAGATTATGAGCGAGAGAGGAGGAAAAGAAGTATGGGCGGAGCTGCCATTGCCCCACCCACTTCTCTGGTAGAGAAAGACAAAGAGTTACCCCGAGATTTTCCTTATGAAGAGGACTCAAGACCTCGATCACAGTCTTCCAAAGCAGCCATTCCTCCCCCAGTGTACGAGGAACAAGACAGACCGAGATCTCCAACCGGACCTAGCAACTCCTTCCTCGCTAACATGGGGGGCACGGTGGCGCACAAGATCATGCAGAAGTACGGCTTCCGGGAGGGCCAGGGTCTGGGGAAGCATGAGCAGGGCCTGAGCACTGCCTTGTCAGTGGAGAAGACCAGCAAGCGTGGCGGCAAGATCATCGTGGGCGACGCCACAGAGAAAGATGCATCCAAGAAGTCAGATTCAAATCCGCTGACTGAAATACTTAAGTGTCCTACTAAAGTGGTCTTACTAAGGAACATGGTTGGTGCGGGAGAGGTGGATGAAGACTTGGAAGTTGAAACCAAGGAAGAATGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATATTTGAAATTCCTGGTGCCCCTGATGATGAAGCAGTACGGATATTTTTAGAATTTGAGAGAGTTGAATCAGCAAttaaagCGGTTGTTGACTTGAATGGGAGGTATTTTGGTGGACGGGTGGTAAAAGCATGTTTCTACAATTTGGACAAATTCAGGGTCTTGGATTTGGCAGAACAAGTTTGATTTTAAGAACTAGAGCACGAGTCATCTCCGGTGATCCTTAAATGAACTGCAGGCTGAGAAAAGAAGGAAAAAGGTCACAGCCTCCATGGCTGTTGCATACCAAGACTCTTGGAAGGACTTCTAAGATATATGTTGATTGATCCCTTTTTTATTTTGTGGTTTTTTAATATAGTATAAAAATCCTTTTAAAAAAACAACAATCTGTGTGCCTCTCTGGTTGTTTCTCTTTTTTATTATTACTCCTGAGTTGATGACATTTTTTGTTAGATTTCATGGTAATTCTCAAGTGCTTCAATGATGCAGCATTTCTTGCACTaaaaaaaaaaaaaaaaaaaaaaCTAGAAAGTTTTGGGACATGGGGTTATATTAAATTATTCTTTGTTTTTCTTTTTCTTTTAATAAAGCCTGCAAGTTACTAAATTGTAGTTTCATAAATTCTGTAGTAAAGTATCATCTTGGCAGTGTGCCAAAGGTGAAAATGATGCTTTCTCTAACAGAGAAATTCTTAGTGACTCCAGTCGTAGAAAAACGTCTTTACAACCTGAATAAGATTGAAGAATTGTGAACATACCATGGCCTATTGGATGAATCATTTGCCGTAGGCTAAATCAGACTGTAGGGTTTGTGATGGATTTATGGAGTATGTGGGTATAGAAATCATGAATCTAGCATTTGTTTTCAGAGATTCAAGCATAGTCTTAAGGGTAGATCAGAAATGACAAATGAATTCAAAACCTAGCAGGTGCATTGTAAATGTGTGCCCAGTTATGTTTTGGAAATGGCAGTTCCTTGGGGTCATGTTTCTACTGGCAAAATTTGCAATAGTGTTCTATTGTATGTAATTTTAAAATTTATAAGATTATCCACGTTGGCCAAGTAAACTGTACTGCCAATAGAATTCTGGAATTGTGAGAAATTGTATCATTGAAGTTCAGTAGGATGTGTGGCTTAAAAATTTATCAGGACCACAAAAAAGAAAACAAAAATATTTGGTACTGAGGTTCATTGCCAGGGCAGGAGGTATTTCCAGAAAATACTCATGCCTGTGTTCTGTTCCTTGCTTTCCCAAATACTGCATGTGACTTTCCTAAGCGGCAGCTGAAAGACTCGAGCCCGTGCTGTCTCCTTTGGTTATTATGACATGAAAGTGTATCAAGAACTCAGCATTTCTTTGCATCCATGGACTTGGTTTGGAGACATAAGGAATATTCTGACCCTTTTTAAAAAAGGATTTTCTCATGTTTTTATTTAACATAAATAAAAGAATAACATTTTATCTTTTGTGGTATTATTTTATTGAATAAAATTGAGTTTTATGATAAAAGTGCACCTGTTCTGTAAAGTAAGTTGGGGTTAAGGAATGTGAGGTAAATTACATAATTGAACATTGTGGAAGACAGAATCAAAAGCAGCCCTGGAACTTCAGTTATCTATGGAATTAGGCATACCATTCCTCAAGTGGAAACCATGTTTGTGCTTACAAGTACCGGAGTGTGCTTGTTTAATTTTAGAAACTAATGGTTCCAACCCACCTTTCATGCATGCATTTATTGTTGTTATGCTTTGTAAAACATTGTTTGCACCTAAATGGGTGGCTTTTCCTAACATTCTCATGGTCAGCAACCAGAGAGTTGCAACCAACTCATACTACTTGATTTCCGTTCGCATGAGGACAGCTTGGTGTGTGCCTTTCTCCCCAGTCTTTTATTTTTAAAATAACTGTGTTAATCAGTTAGTGCTTTATTTATAATGAATTTCTGATAGTCGAATAATTTCTAAATCTCCTGCAAGTTAGTACTTGAGaaatttgaaattaattttcaatattaacatttaagctaatataaaaattttaaatttcaataaaaattaaaaattaTGTAAGCTACAA

Publications

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