Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name STK33P1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:85493502-85493773  UCSC
Coordinates (T2T) chr9:97643893-97644164  UCSC
Coordinates (hg19) chr9:88108417-88108688  UCSC
Strand +
Parental Sequence NM_001352395.2
Parental seq. overlap 221 bp
Parental seq. overlap (%) 9.5%
Genomic Region Intergenic
Retrocopy Summary STK33P1, located on chr9:85493502-85493773, is a retrocopy of the parental gene STK33. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name STK33
Full Name serine/threonine kinase 33
Also known as -
Coordinate chr11:8391870-8594228
Strand -
Gene summary Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in mitotic DNA damage checkpoint signaling and protein autophosphorylation. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes STK33P1
Bonobo Pan paniscus STK33P1
Gorilla Gorilla gorilla STK33P1
Orangutan Pongo abelii STK33P1
Gibbon Nomascus leucogenys STK33P1
Green monkey Chlorocebus sabaeus STK33P1
Crab-eating macaque Macaca fascicularis STK33P1
Rhesus Macaca mulatta STK33P1
Baboon Papio anubis STK33P1
Golden snub-nosed monkey Rhinopithecus roxellana STK33P1
Marmoset Callithrix jacchus STK33P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>STK33P1
CCCCTTTATGGCAAGTTCAGAAGAGACATTTTTGAATTAACAGAAAGAGAGAGCTACATTTTGAAGATCCACTTTGGGATTCTATAAGTGATTGCACTAAAAGCATTTTGAAACGACTTATCAAAGTGGATCCTGCTCCCAGAATCACAGCTAAGGAACTGCTCGATGCCCAACGGCCAGCAGGCCATACACTTCCTTTGGCGAGATCAACCAATGTGATAGAAATGATTTAAGAATGGAAAGACAACCCAGGAACCGATGAGGAAAACACA
>NM_001352395.2
GCTGTTTGTCCTCGCGCGGCCCCCGTCCACTGCCCTGCGGTTGCTCTGCGGGCTGAAAAGTTTCTCCCGGTGCAGAATTCCGGGCTCAGCGACAGCCTGCGCCGAGTGTGCGCACCTGTCGGAGACCCGCCAGTCCGCCGGCCGCGGCAGGGCCACTACTTCTCAGCACATCCGGCCTTCTGGCTCATCTCCTCCCTGCATCTCACTACGCCCCTCCCCACTCCAGGCAAAACAAGGGTTCCTCCAGTTTTGGTGGTGGAAATGTCACAGACATCAAGCATTGGTAGTGCAGAATCTTTAATTTCACTGGAGAGAAAAAAAGAAAAAAATATCAACAGAGATATAACCTCCAGGAAAGATTTGCCCTCAAGAACCTCAAATGTAGAGAGAAAAGCATCTCAGCAACAATGGGGTCGGGGCAACTTTACAGAAGGAAAAGTTCCTCACATAAGGATTGAGAATGGAGCTGCTATTGAGGAAATCTATACCTTTGGAAGAATATTGGGAAAAGGGAGCTTTGGAATAGTCATTGAAGCGACAGACAAGGAAACAGAAACGAAGTGGGCAATTAAAAAAGTGAACAAAGAAAAGGCTGGAAGCTCTGCTGTGAAGTTACTTGAACGAGAGGTGAACATTCTGAAAAGTGTAAAACATGAACACATCATACATCTGGAACAAGTATTTGAAACGCCAAAGAAAATGTACCTTGTGATGGAGCTTTGTGAGGATGGAGAACTCAAAGAAATTCTGGATAGGAAAGGGCATTTCTCAGAGAATGAGACAAGGTGGATCATTCAAAGTCTCGCATCAGCTATAGCATATCTTCACAATAATGATATTGTACATAGAGATCTGAAACTGGAAAATATAATGGTTAAAAGCAGTCTTATTGATGATAACAATGAAATAAACTTAAACATAAAGGTGACTGATTTTGGCTTAGCGGTGAAGAAGCAAAGTAGGAGTGAAGCCATGCTGCAGGCCACATGTGGGACTCCTATCTATATGGCCCCTGAAGTTATCAGTGCCCACGACTATAGCCAGCAGTGTGACATTTGGAGCATAGGCGTCGTAATGTACATGTTATTACGTGGAGAACCACCCTTTTTGGCAAGCTCAGAAGAGAAGCTTTTTGAGTTAATAAGAAAAGGAGAACTACATTTTGAAAATGCAGTCTGGAATTCCATAAGTGACTGTGCTAAAAGTGTTTTGAAACAACTTATGAAAGTAGATCCTGCTCACAGAATCACAGCTAAGGAACTACTAGATAACCAGTGGTTAACAGGCAATAAACTTTCTTCGGTGAGACCAACCAATGTATTAGAGATGATGAAGGAATGGAAAAATAACCCAGAAAGTGTTGAGGAAAACACAACAGAAGAGAAGAATAAGCCGTCCACTGAAGAAAAGTTGAAAAGTTACCAACCCTGGGGAAATGTCCCTGATGCCAATTACACTTCAGATGAAGAGGAGGAAAAACAGTCTACTGCTTATGAAAAGCAATTTCCTGCAACCAGTAAGGACAACTTTGATATGTGCAGTTCAAGTTTCACATCTAGCAAACTCCTTCCAGCTGAAATCAAGGGAGAAATGGAGAAAACCCCTGTGACTCCAAGCCAAGGAACAGCAACCAAGTACCCTGCTAAATCCGGCGCCCTGTCCAGAACCAAAAAGAAACTCTAAGGTTCCCTCCAGTGTTGGACAGTACAAAAACAAAGCTGCTCTTGTTAGCACTTTGATGAGGGGGTAGGAGGGGAAGAAGACAGCCCTATGCTGAGCTTGTAGCCTTTTAGCTCCACAGAGCCCCGCCATGTGTTTGCACCAGCTTAAAATTGAAGCTGCTTATCTCCAAAGCAGCATAAGCTGCACATGGCATTAAAGGACAGCCACCAGTAGGCTTGGCAGTGGGCTGCAGTGGAAATCAACTCAAGATGTACACGAAGGTTTTTTAGGGGGGCAGATACCTTCAATTTAAGGCTGTGGGCACACTTGCTCATTTTTACTTCAAATTCTTATGTTTAGGCACAGCTATTTATAGGGGAAAACAAGAGGCCAAATATAGTAATGGAGGTGCCAAATAATTATGTGCACTTTGCACTAGAAGACTTTGTTAGAAAATTACTAATAAACTTGCCATACGTATTACAGCAGAAGTGCTTCAGTCATTCACATGTGTTCGTGAGATTTTAGGTTGCTATAGATTGTTTAAGACAGCTTATTTTAAATGTAGAAAAATAGGAGATTTTGTAACTGCTTGCCATTAACTTGCTGCTAAATTCCCAATGTATTGATTAAATCAATAAAAAACAGATGTTACTCAGCA

Publications

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