Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CSGALNACT2P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:100956590-100959304  UCSC
Coordinates (T2T) chrX:99399274-99401989  UCSC
Coordinates (hg19) chrX:100211579-100214293  UCSC
Strand +
Parental Sequence NM_018590.5
Parental seq. overlap 2545 bp
Parental seq. overlap (%) 66.9%
Genomic Region Intergenic
Retrocopy Summary CSGALNACT2P1, located on chrX:100956590-100959304, is a retrocopy of the parental gene CSGALNACT2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CSGALNACT2
Full Name chondroitin sulfate N-acetylgalactosaminyltransferase 2
Also known as CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT
Coordinate chr10:43138445-43185308
Strand +
Gene summary This gene encodes a member of the chondroitin N-acetylgalactosaminyltransferase family. The encoded protein is involved in elongation during chondroitin sulfate synthesis. Alternative splicing of this gene results in multiple transcript variants. Two related pseudogenes have been identified on chromosome X. [provided by RefSeq, Feb 2016]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus CSGALNACT2P1
Gorilla Gorilla gorilla CSGALNACT2P1
Orangutan Pongo abelii CSGALNACT2P1
Green monkey Chlorocebus sabaeus CSGALNACT2P1
Crab-eating macaque Macaca fascicularis CSGALNACT2P1
Rhesus Macaca mulatta CSGALNACT2P1
Baboon Papio anubis CSGALNACT2P1
Golden snub-nosed monkey Rhinopithecus roxellana CSGALNACT2P1
Chimpanzee Pan troglodytes Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CSGALNACT2P1
GGAGATAAAGGCATGCAGTATGAACTCTTTTTTAAGAAAGCAGATTTTATGGAATATAGACATGTGACCCTCTTCCGCCCTTTTGGACCTCTCATGAAAGTGAAGAGCAAGATGATTGACATCATTAGATCAATTATTATTAATATCATTATGCCACTTGCTGAAAGAACTGAAGCACTTGTACAGTTTATGCAGAACTTCAGGGAGGTTTGTATTCATCAAGACAAGATTCATCTCACAGTAGTGTATTTTGGTAACGAAGGACTGTCTAAAGTCAAGTCTAGCCTAGAATTTGTCACAAGTGAGTCTAATTTTCACAATTACACTGTGGTCCATTGAATGAAGAATTTAATCGTGGATGAGGACTAAATGTGGGTGCCCGAGCTTGGGACAAGGGAGAGGTCTTTATGTTTTTCTGTGATGTTGATATCTATTTCTCAGCCGAATTCCTTAACAGCTGACAGTTAAATGCTGAGCCTGGTAAGAAGGTGTTTTACCCTGTGGTGTTCAGTCTTTACAATCCTGCCATTGTTTATGCCAACGAGGAAGTGCCATCACCTGTGGAGCAGCAGCTGGTTCACAAAAAGGATTCTGGCTTTTGGAGAGATTTTGGCTTTGGAATGACTTGTCAGTATCGATCTGATTTCCTGATCATTGGTAGATTTGACATGGAAGTGAAAGGTTGGGGTGGAGAAGATGTTCATCTTTGTCAAAAATACTTACATGGTGACCTCATTGTGATTTGGACTCCGGTTACTGGTCTTTTCCACCTCTGGCCTGAAAAACGCTGTGCTGATGAGCTGACCCCCGAGCAGTACCGCATGTGCATCCAGTCTAAAGCCATAAATGAGGCCTCTCGCTCCCACCTGGGAATGCTGGTCTTCAGGGAGGAAATAGAGACGCATCTTCATAAACAGGCATACAGGACAAACAGCGAAGCTGTTGGTTGAAATCATAATTAATGCGTTACTGTGTGAACCGCAAACCAGCACTATTTATTTAGCCTTAATTCCACTTCCGGATGCAGTGCCTCTTTTGGAGAAGACATGTTTATTTTTCCTTTCTGACATTACTTTAGCAGTTCAACTTGATGAGAGATGAAAAAAACAAATGTTTCAACACAAAGTCTCTGTTTTGTGAAAATACTGCACTATGGAATAATTGACAAATTAAAATCTCGTATTTGTCCCAAAAGTTGTTTTGAGTTAGTTCTACCTGGTGCCCATGTTCTGATTGTGTGTGGGATTGCATGGTGTCCTGATTGCATCTAGGTGGAGCGGATGGAATGTGCTGGGCTGCTGTTGGGTGAAGAGCAGCACATTCTTACAGAGGAGATGGAGTGCTATGAGCATAGTGTGTGGACAGGTATCTTCATCTGCCCACCCCTGAGTCAGCGTGCTTGATTTGATAGCTTGAAGAATCCTTTTCCACTGAAGCAGAGGATAATTATTTGACACATCTGAAATCCTCAATCAATCAATCAAGAGAAAGGTAGAAATAAAAACTCCTTAACTTACTGTTGCTTAGCCTCCTGAAAGTCTGTTTTTAAGCAAATGGGTAATAGTAGAAAACAGGTTAGAATCTATGGCTTGATTAAAAATATAATGCTATTACATTATCATCATGCTCAGGATTAGTAGTCAGAGTTGCTATAGACTATTTTGCACAAACAGAAAAGAACACGGAAACCTTTTTAACAGAGCATTTAATTATGTTGGAGTACAGGATCCTAGCTGTGTCTGGGAACATTAGTTTATGTGCGCCAGCTACATCAGGGTCTTCCCATGGTGGTTCAGAATAGATGAGCATAGCAAGGTTTTGTTTTTGCTTTCGATTTTCTCATTTGGCATGGACCCATATGTATTTGCTATCCTTTTTTCTAATATATTAATATATGCTACATTTGTATTTGCATTACTATAATACTTTGAGTTGAAAAAGAGTTTCATTGTGGGGAGAAAAAGCAAATGGTATACCACAAGGTCACTCTGATTTGAGAAAAGAGAGGAGGAGGGGAAGATAGTCTGAATGGAAATCTGAAATATGGAATGTTTTAGAGAAATATATCACTTGCATATAGAATGTTTTGAGGTATAAATTAATGAGACAAAGTGAAGAAGAAATTATATTCAGATAGGACTGCACTATGTGTGATTATTTGTCACACATGGATCTGTTACCATCAGGTCAATTCCTAGCATGCATAAATTTTTTAACCTTCAGCTTTTAAAAGAGACCTATGTTGAATTCTATTAGTATGTAAACCCCTGAAAATTCACTGAAGAAAAATCATTACTCTTTTTCTCAGTAAATCATATCATCTGAAATATTACAAATTTCAAATTTCTAGGTGCTATATTAATTCAATATTATAATAACTCTTACCTAATTATTCTTACAAGTTTTGAGTTGTGGTAGTGTTTAGGGATTTTTTTAAAGATGTGTGAAATATTCTCTGCAAAATCAGGCCACTGTCTCCTTTTATATATTAATACAATTGTGTATTACAAAGACCAGTGAATTATAATATTTAAAGTGAGATAACGTAATTATTTGCAAAGGTAAGTTACAGCTTGTTTTTCGAGAGAATCAAATGAGTTTACTTTTCCTCCTATTGTTTTTAAACTAGCTTTTAGTTTAAAGATGGAAGCTAACCAATGGAAATGTTACTATGTTTTTGACGTTTATTAAACAGTACCAATAAAGTATTTTATT
>NM_018590.5
CTCTCAGGCGCGGCGGCGCGCCCGGGGGTGGGTGGCTGAGGCGGCGGCGGGCCCAAGGCGTGAGGCGCCGCCCGGGTGTCCCCGCGGCGCAGGAGGCGGTGGAGCGCAGAGCGGGCGAGCGCGAAAAATCACTACCAATATAATGGATTTTATATATCAGATTGCTTTATTCTGGATATCATGGTAACAATACAGAAAGTATACATAATTTCCCATTTCTGCAAGTAGTCATGACTGCTGAAGAAAGAAAAACTTAAAGCTACGGCAGAATTATTTTATGGAAATTCTGATTTTGTTTTTAATTTTTGATAACTTTTTACTAAAGGTATGAACACACAAAGAGCTTATTTTGTTAGGCAAATACACATTAATAAGAATGCCTAGAAGAGGACTGATTCTTCACACCCGGACCCACTGGTTGCTGTTGGGCCTTGCTTTGCTCTGCAGTTTGGTATTATTTATGTACCTCCTGGAATGTGCCCCCCAGACTGATGGAAATGCATCTCTTCCTGGTGTTGTTGGGGAAAATTATGGTAAAGAGTATTATCAAGCCCTCCTACAGGAACAAGAAGAACATTATCAGACCAGGGCAACCAGTCTGAAACGCCAAATTGCCCAACTAAAACAAGAATTACAAGAAATGAGTGAGAAGATGCGGTCACTGCAAGAAAGAAGGAATGTAGGGGCTAATGGCATAGGCTATCAGAGCAACAAAGAGCAAGCACCTAGTGATCTTTTAGAGTTTCTTCATTCCCAAATTGACAAAGCTGAAGTTAGCATAGGGGCCAAACTACCCAGTGAGTATGGGGTCATTCCCTTTGAAAGTTTTACCTTAATGAAAGTATTTCAATTGGAAATGGGTCTCACTCGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAACGAGATGAATTGGTGGAAGTTATTGAAGCGGGCTTGGAGGTCATTAATAATCCTGATGAAGATGATGAACAAGAAGATGAGGAGGGTCCCCTTGGAGAGAAACTGATATTTAATGAAAATGACTTCGTAGAAGGTTATTATCGCACTGAGAGAGATAAGGGCACACAGTATGAACTCTTTTTTAAGAAAGCAGACCTTACGGAATATAGACATGTGACCCTCTTCCGCCCTTTTGGACCTCTCATGAAAGTGAAGAGTGAGATGATTGACATCACTAGATCAATTATTAATATCATTGTGCCACTTGCTGAAAGAACTGAAGCATTTGTACAATTTATGCAGAACTTCAGGGATGTTTGTATTCATCAAGACAAGAAGATTCATCTCACAGTGGTGTATTTTGGTAAAGAAGGACTGTCTAAAGTCAAGTCTATCCTAGAATCTGTCACCAGTGAGTCTAATTTTCACAATTACACCTTGGTCTCATTGAATGAAGAATTTAATCGTGGACGAGGACTAAATGTGGGTGCCCGAGCTTGGGACAAGGGAGAGGTCTTGATGTTTTTCTGTGATGTTGATATCTATTTCTCAGCCGAATTCCTTAACAGCTGCCGGTTAAATGCTGAGCCAGGTAAGAAGGTGTTTTACCCTGTGGTGTTCAGTCTTTACAATCCTGCCATTGTTTATGCCAACCAGGAAGTGCCACCACCTGTGGAGCAGCAGCTGGTTCACAAAAAGGATTCTGGCTTTTGGCGAGATTTTGGCTTTGGAATGACTTGTCAGTATCGTTCAGATTTCCTGACCATTGGTGGATTTGACATGGAAGTGAAAGGTTGGGGTGGAGAAGATGTTCATCTTTATCGAAAATACTTACATGGTGACCTCATTGTGATTCGGACTCCGGTTCCTGGTCTTTTCCACCTCTGGCATGAAAAGCGCTGTGCTGATGAGCTGACCCCCGAGCAGTACCGCATGTGCATCCAGTCTAAAGCCATGAATGAGGCCTCTCACTCCCACCTGGGAATGCTGGTCTTCAGGGAGGAAATAGAGACGCATCTTCATAAACAGGCATACAGGACAAACAGTGAAGCTGTTGGTTGAAATCATAATTAATGCGTTACTGTATGAACCACAAAACAGCACTATTTATTTAGCCTTACTTCTACTTCCAGATGCAGTGCCTCTTTTGGAGAAGACATGTTTATTTTTCATGTTCTTTCTGACATTACTTTAGCAATTCAACTTGATGTGAGAAGAAAAAACAAATGTTTCAACACAAAATCTCTGTTTTGTGAGAATACTGCACTATGGAATAATTGACAAATTGAAATCTCATATTTGTCCCAAAAGTTGTTTTGAGTTAGTTCTACCTGGTGCCCATGTTCTGATTGTGTGTGGGATTGCATGGTGTCCTGATTGCATCTAGGTGGAGCGGATGGAATGTGCTGGGCCACTGTTGGGTGGAGAGCAGCACATTCTTACAGAGGAGATGGAGCGTTATGAGCATAGTATGTGGATAGGTATCTTCACCTGCCCGCCCCTGAGTCAGCCTCCTTGACTTGATAGCTTGAAGAATCCTTTTCCACTGAAATAGAGGATAATTAATTGACACATCTGAAATCCCCAATCAATCAATCAAGAGAAAGGTAGAACTAAAAACTCCTTAACTTACTGTTGCTTACACCCCTGAAAGTCTGTTTTTAAGCAAATGGGTAATAGTAGAAAATAGGTTAGAATCTATGGCTTGATTAAAAATATGTTATTACATTATCATGTTCAGGATTAGGATTAGTAGTCAGTTGCTGTAAACTATTTTGAACAAACAGAAAAGAACACGGAAACATTTTTAACAGAGCATTTAATTATGTTGGAATACAGGATCCTAGCTCTGTCTGGGAACATTAGTTTATTTGAGCCAGCTCTATCAGGGTCTTCCCATGGTGGTTCAGAATAGATGAGCATAGCATGGTTTTGTTTGTTTTTGCTTTCAATTTTCTAATTTGGCATGGATCCATATGTATTTACTATCCTTTTTCTAATATATTAATATATGCTACATTTGTATTTGCATTACTATAATACTTTGAGTTGAAAAAGAGTTTCATTGTGGAGAGAAAAAGCAAATGGTATGCCACAAGATCACTCTGATTTGAGAAAAGGGAGGAGGGGAAGATAGTCTGAATGGAAATCTGAAATACGGAATGTTTTAGAGAAATATGTCACTTGCATATAGAATGTTTTAATTGAGGTATAAATTAATGAGACAAAGTGAAAAAGAAATTATATTCAGATAGGACTGCACTACATTATTTGTCACACATGGATCTGTTACCATCAGGTCAATTCCTAGTATGCATAAATTTTTTAACCCTTTTAAAAGAGACCTATGTTGAAAACCCCTGAAAATTCACTGAAGAAAAATCATTACTCTTTTTCTCAGTAAATCATATCATCTGAAATATTACAAATTTCAAATTTCTAGGTGCTATATTAATTCAATATTACAATAACTCTTACCTAATTATTCTTACAAGTTTTAAGTTGTGGTAGTTTAGTGATTTTTTTAAAAGATGTGTGAAATGTTCTCTGCAAAATAATTCAGGCCACTGTCTCCTTttatatattattataattatttattatGAAGACCAGTGAATTACGATATTTAAAGTGAGAGAACTTAATTATTTGCAAAGGTAAGTTACAGCTTGTTTTTTGAGAGAATCAAATGAGTTTACTTTTGTTCCTGTTGTTTTTAACTAGCTTTAAGTTTAAAGATGGAAGCTAAGCAATGGAAATGCTATACGTTTTTGACATTTATTAAATGGTACCAATAAAGTATTTTATTACCAAAAGTTAAA

Publications

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