Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ELF2P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:103909779-103911366  UCSC
Coordinates (T2T) chrX:102351135-102352722  UCSC
Coordinates (hg19) chrX:103164699-103166286  UCSC
Strand -
Parental Sequence NM_001371324.1
Parental seq. overlap 1370 bp
Parental seq. overlap (%) 32.9%
Genomic Region Intergenic
Retrocopy Summary ELF2P1, located on chrX:103909779-103911366, is a retrocopy of the parental gene ELF2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ELF2
Full Name E74 like ETS transcription factor 2
Also known as EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2
Coordinate chr4:139057220-139177218
Strand -
Gene summary Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription, DNA-templated; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Located in cytosol and nuclear body. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla ELF2P4
Green monkey Chlorocebus sabaeus ELF2P3
Crab-eating macaque Macaca fascicularis ELF2P3
Rhesus Macaca mulatta ELF2P3
Golden snub-nosed monkey Rhinopithecus roxellana ELF2P2
Marmoset Callithrix jacchus ELF2P3
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ELF2P1
AAATATTTGTCCAGGTATATTACATGGGCTCAGGGAGAAAAAGGCATATTTAAGCCTCTGTATTCAAACACTAATCTGTAAGCTTTGGGAAAAGTATAAGAACAAGCCAGACATGAATTATGAAGCCAGGGGATGTGCTTTGAGATCCTACTACCATAGGGAAATTCTTGCAAAGGCTGAAGGACAGAGGCTTGTATATCAGTGCAAGGATATGCCCTCAAACAGATTGGTCATAGATAATGACAAACGCCAGACTTGTAATGAAGGTTTAGCAGCAGCTTCTGATGCAAGTCATTAAAACCAGTGTCACCGTCTGCAGAGAGTGTCCTAAAAGCAGCAACTTCTGTCCGTGGTGGAAATAACTCATATCCTATAAACTTCTCCAGAGCAGAGAAGGGTGTATCTGGAGTTGTGAATATCATTTCCCCTGGTCACCATGTTTCCTCCAGGTCTCCTACTACTACCAAATCTGTATCAGCAACAGCAGCAGCTCCAAGGACAGTATGTGTGGCAATGCAAGTACCTGCTGTCATGACATCAGAAAATTTCAACTATGGCGGTTGAGTCAGTTAATGTAGGTGCACCATTAATAACTACCACTAGTCCGACAGCAGCAGCCTCACCAAAGGTTCATTCAGGCAAACCCTACTGGGATGCCAGCTTCTACTGAAAACGGAGACAAAATCACCATTCAGCCTGCCAAACTCATTACCATCCCTGCTACACATCCAAGTCTGCACAGTGTAAGTAGCAGACGAAGTCAAGTCTGACTAAATCATTAACATCGTTGGAAACCCCCGGCTGTGAGAGCACTTACCACTGTTTCAATAGTGCATGGTACACCTTTAATGGGACTATCACTGCCTACTCAACAGGCATCTGGCCAGACTCTTCTTGAAGTTGTCAGTGCAGTCATAAAAGGTTGAATCAGAATCCATGGAAAACCAGTAGAAAGATGATGTGGAGACTGCAACTGGTAGAAGAGAAACCAGCAGATGAAATAAGACAGTGACCCAAGTAGCGGTTGTCAGTGAGACTTCTGCTATTGCCTTTCGAGTAACTAACTATAAGAACAGAAATACTATTGACATGTGAGAAATAAAATGACAGGCCCACCATAGATTTCAGACTGTGAGTGGTAGTACTGACATAAACACTTGCAAGGGAAGTCATCAAGAAAAGTCAAAGAAGACTTTAAAACATTTTAATGCATATAAGAAAACAATGAAACTTACCGGAAATAAGTTATCTATCCCATGTGTCAATGAGAAATGAACTACATGCATTGAGATGCTGACAGAAACCTCCCTCTTACAGTAGGAAAACAACTGAACCCTTCAATAAGAAAAAGGATTGAAAGGGACCAGGCAGCACACTACTATCTCAAGTTATGCTAAGATTTGAAACACTGACATTCTGCAAGAGGTTATACAGTTTTCAGTGGGGAGGGGTTGGGATAGGTGATCTCATTGTTACACATAGCAACTTTTAATGCATTTTATATGCATATTAGCAAGTATTACTGTGTTCTCACACTACTCACTTAACTTGTGCTATGTGAAGGCTCTGCTAATACAGGTGTTTTT
>NM_001371324.1
ATTGCTCCCAGCGCCAAGCTCTGTGTCGCCGCCGTCGCCTAGGCGGTTGGGGGTCggtggggcggcgcgggcgggggtcgctgcgcggggcggCGAGCCTCTGTTTTGTCTCCTTCTCTCCCTGTGGAGCGGCTCGGGCTGCTGGGGAGGCCCCGGCTCCCTCCGGACGCTCGGCCAACGGCGGCGGCTAGTCCGCGGCCCTGCTGAGAGGGAAAAGGACGCCGCGGTCTTCCCAGGCGTCGCGGAGAGCAGggatgttgccagagtcacccactaggtggactgaaggatctcttaggtcaagttctgtcaagttaccagcagaagctactgattgtgaaatttcagttacaacattatcttgccaagtgaaaaagctacgccttaagagggTTCCAAAGAACTACTGGTTCAGATTTTAGCTCTTCCCAAGTTGTGAAAATAGTGAAGGATGCTTAGACTACTTAACATACAAACTGCTTTCTGGTTAATCATCTTTAGAAGACTGGATTTCTGGATATCTACTCCACTCCATCTCTATTGACTTTTAAAACATGATAATGCAAACCTATAACACTGGCAACCATCAGTGAACCTTTAATTTCATTGATTAATAGCGTTTGAAGCTTCCTCAGGGAATAACAATGACATCAGCAGTGGTTGACAGTGGAGGTACTATTTTGGAGCTTTCCAGCAATGGAGTAGAAAATCAAGAGGAAAGTGAAAAGGTTTCTGAATATCCAGCAGTGATTGTGGAGCCAGTTCCAAGTGCCAGATTAGAGCAGGGCTATGCAGCCCAGGTTCTGGTTTATGATGATGAGACTTATATGATGCAAGATGTGGCAGAAGAACAAGAAGTTGAGACCGAGAATGTGGAAACAGTGGAAGCATCAGTTCACAGCAGTAATGCACACTGTACAGATAAGACAATTGAAGCTGCTGAAGCCCTGCTTCATATGGAATCTCCTACCTGCTTGAGGGATTCAAGAAGTCCTGAATTCATCCATGCTGCTATGAGGCCAGATGTCATTACAGAAACTGTAGTGGAGGTGTCAACTGAAGAGTCTGAACCCATGGATACCTCTCCTATTCCAACATCACCAGATAGCCATGAACCAATGAAAAAGAAAAAAGTTGGCCGTAAACCAAAGACCCAGCAATCACCAATTTCCAATGGGTCTCCTGAGTTAGGTATAAAGAAGAAACCAAGAGAAGGAAAAGGAAACACAACCTATTTGTGGGAGTTTCTTTTAGATCTACTTCAAGATAAAAATACTTGTCCCAGGTATATTAAATGGACTCAGAGAGAAAAAGGCATATTCAAGCTGGTGGATTCAAAGGCTGTCTCTAAGCTTTGGGGAAAGCATAAGAACAAACCAGACATGAACTATGAAACCATGGGACGAGCTTTGAGATACTACTACCAAAGGGGAATTCTTGCAAAGGTTGAAGGACAGAGGCTTGTATATCAGTTCAAGGATATGCCGAAAAACATAGTGGTCATAGATGATGACAAAAGTGAAACCTGTAATGAAGATTTAGCAGGAACTACTGATGAAAAATCATTAGAACGAGTGTCACTGTCTGCAGAAAGTCTCCTGAAAGCAGCATCCTCTGTTCGCAGTGGAAAAAATTCATCCCCTATAAACTGCTCCAGAGCAGAGAAGGGTGTAGCTAGAGTTGTGAATATCACTTCCCCTGGGCACGATGCTTCATCCAGGTCTCCTACTACCACTGCATCTGTGTCAGCAACAGCAGCTCCAAGGACAGTTCGTGTGGCAATGCAGGTACCTGTTGTAATGACATCATTGGGTCAGAAAATTTCAACTGTGGCAGTTCAGTCAGTTAATGCAGGTGCACCATTAATAACCAGCACTAGTCCAACAACAGCGACCTCTCCAAAGGTAGTCATTCAGACAATCCCTACTGTGATGCCAGCTTCTACTGAAAATGGAGACAAAATCACCATGCAGCCTGCCAAAATTATTACCATCCCAGCTACACAGCTTGCACAGTGTCAACTGCAGACAAAGTCAAATCTGACTGGATCAGGAAGCATTAACATTGTTGGAACCCCATTGGCTGTGAGAGCACTTACCCCTGTTTCAATAGCCCATGGTACACCTGTAATGAGACTATCAATGCCTACTCAGCAGGCATCTGGCCAGACTCCTCCTCGAGTTATCAGTGCAGTCATAAAGGGGCCAGAGGTTAAATCGGAAGCAGTGGCAAAAAAGCAAGAACATGATGTGAAAACTTTGCAGCTAGTAGAAGAAAAACCAGCAGATGGAAATAAGACAGTGACCCACGTAGTGGTTGTCAGTGCGCCTTCAGCTATTGCCCTTCCTGTAACTATGAAAACAGAAGGACTAGTGACATGTGAGAAATAAAATAGCAGCTCCACCATGGACTTCAGGCTGTTAGTGGCAGTACTGACATAAACATTTGCAAGGGAAGTCATCAAGAAAAGTCAAAGAAGACTTTAAAACATTTTTAATGCATATACAAAAACAATCAGACTTACTGGAAATAAATTACCTATCCCATGTTTCAGTGGGAAATGAACTACATATTGAGATGCTGACAGAAAACTGCCTCTTACAGTAGGAAACAACTGAACCCATCAATAAGAAAAAGGATCGAAAGGGACCAAGCAGCTCACTACGATATCAAGTTACACTAAGACTTGGAACACTAACATTCTGTAAGAGGTTATATAGTTTTCAGTGGGAGGGGTTGGGATGGGTAATCTCATTGTTACATATAGCAATTTTTGATGCATTTTATATGCATACCAGCAATTATTACTGTGTTCGCACAGTTCTCACTTAACTGGTGCTATGTGAAGACTCTGCTAATATAGGTATTTTAGAATGTGAATTGAAGAATGGATCCCAAAAACTTCAGAAAGAGGATAGCAAAAAAAGATCTAGTGCGATTTtatatatatatatatatatatatacatacatatatatatatcatataGCTTAAGCTGATTTAAAACAAAGGCCTTAGACTAATTTTCGATTTTCTTTCTTGAAATAAGCTAATGGCTTGTTTGTGTAAAGCTTTTTTATTAAAAGAAAAATTTTAAAAATCTTGTACCTAGCACAGTATTGTTATAGAATATACATGTAACATTTTATATGGTAGTTTAAGTCTGTCAGTTTCTTAATTGTGGACAAATTAACAGTTGGCTCTGGCCTTTTGCTGTAACATGCCTGTGTCACTCACTTAGCCTTGGCATTTGTGCAGACATACCATTTTCAGTTCTGCTGTCACTTGGAAGTTCAGGCTCAGCATGAATTTTTGGCAGGTAGCTCTAATACCTGGAGttttctttgtttttttttcttttttttAGTTGAAGTTTATGAGGGAAATACCAGTGTTCAGTTTTGAACTATAATAGTTTGTATATTCAACATTTGAAGTATATTCTATTTTGTTGTACTCTTGTTTCAAAGTGTATTCAAGTAGGTTTTCTGAAATATAGAAATGAAATTTATCTTCTGTTTTGGTCTCTGGTGATATTTTAAACAATATTTAAAAGTCAGTATAGAAGTGTTTTAGTTAGGAAGTGATAAAACATCTCTCTTCTCCTTCCCAACTACTGCATGAAGAAATTCTACTTCCATTATATTAATATTTGGCAAATATCTGCATGTTGCCAGTTTCTTTCTAATTATGATGAACTATAATGTTCTGCTTAACGTAATGAATTTAGTATTTTAGTTGGCTGCACTTAAAGAAtttatatttgtaaaacactttaaaccatttgtttcacaatcagaccttttgtggattaaaaagaacaattactcttctagcccttttacagattaggaagttaaggtatctgaaggattaCATAAACTATGTAATTTTACTACTGTCTGTCACTCCATATCTTAATGCTCTTTCTACTACAAAGAAAAGTTATCTATTTTTACATGTTTTAGAAATGTAGATGAACTCATACATAATATTTTTTGTCTTTTAATTGATCACATACTACTTAGGTCAGAAATTGTTTATAACAGTTCCCTTTGTAATCTTTTAAACTTTTCCATAAATATATTGATGATACTTTTATACAAAAGCTCAAAGAAAAACTCACTTGATTATTTTCCCATTTGGGA

Publications

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