Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name BTG3P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr21). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:128122903-128123215  UCSC
Coordinates (T2T) chrX:126436409-126436721  UCSC
Coordinates (hg19) chrX:127256881-127257193  UCSC
Strand +
Parental Sequence NM_006806.5_2
Parental seq. overlap 264 bp
Parental seq. overlap (%) 18.7%
Genomic Region Intergenic
Retrocopy Summary BTG3P1, located on chrX:128122903-128123215, is a retrocopy of the parental gene BTG3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name BTG3
Full Name BTG anti-proliferation factor 3
Also known as ANA|ANA/BTG3|APRO4|TOB5|TOB55|TOFA
Coordinate chr21:17593653-17612940
Strand -
Gene summary The protein encoded by this gene is a member of the BTG/Tob family. This family has structurally related proteins that appear to have antiproliferative properties. This encoded protein might play a role in neurogenesis in the central nervous system. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes BTG3P1
Bonobo Pan paniscus BTG3P1
Gorilla Gorilla gorilla BTG3P1
Orangutan Pongo abelii BTG3P1
Green monkey Chlorocebus sabaeus BTG3P1
Rhesus Macaca mulatta BTG3P1
Baboon Papio anubis BTG3P1
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>BTG3P1
AAAAGTACAGGTCTACATATGTATTCCTGTCAATAAGTGTCAAAGAGTTGATCCAGGTATCCTGAAGGCCCATCAGAACAGCTTCATCTTGTATAGCAATCTGTGATTGCCTAAGGAGCTAACTTTCTTGGTGGACCCATGAGAGGTGTGCTGTCAGTATGGAGAAAAAAAACAATGCACTAATTGTTGCCAGCTTTGAAAATGTAGTTGAGAACAAGCATTAGATCTGAAAGAAAAGTTCAAGGGCCCTTCGACATGGTTACCTCTGATTATCATTTAGCATCCTCTTCTTCACATGAAAAAACATAAGGAA
>NM_006806.5_2
ACTCGTGTGCGCGCTCGTCCGCCCGCCAGTCCTCTCAACGCGCGCTTGGCCGCCCGACGACGCGGGAGCCGCACGCGCCGGACGAGGCTCGCTGCGCTCCCTGTTGCCCAGCGCGGGCCCGTTGAGGCGGAGCCCTCAGTTCCCGGCCAGGACACGGTCTGGGCCGCCGAATCTCCGGCCGAAGAgcggcggcggcagcggcgGGAAAAAAATGAAGAATGAAATTGCTGCCGTTGTCTTCTTTTTCACAAGGCTAGTTCGAAAACATGATAAGTTGAAAAAAGAGGCAGTTGAGAGGTTTGCTGAGAAATTGACCCTAATACTTCAAGAAAAATATAAAAATCACTGGTATCCAGAAAAACCATCGAAAGGACAGGCCTACAGATGTATTCGTGTCAATAAATTTCAGAGAGTTGATCCTGATGTCCTGAAAGCCTGTGAAAACAGCTGCATCTTGTATAGTGACCTGGGCTTGCCAAAGGAGCTCACTCTCTGGGTGGACCCATGTGAGGTGTGCTGTCGGTATGGAGAGAAAAACAATGCATTCATTGTTGCCAGCTTTGAAAATAAAGATGAGAACAAGGATGAGATCTCCAGGAAAGTTACCAGGGCCCTTGATAAGGTTACCTCTGATTATCATTCAGGATCCTCTTCTTCAGATGAAGAAACAAGTAAGGAAATGGAAGTGAAACCCAGTTCGGTGACTGCAGCCGCAAGTCCTGTGTACCAGATTTCAGAACTTATATTTCCACCTCTTCCAATGTGGCACCCTTTGCCCAGAAAAAAGCCAGGAATGTATCGAGGGAATGGCCATCAGAATCACTATCCTCCTCCTGTTCCATTTGGTTATCCAAATCAGGGAAGAAAAAATAAACCATATCGCCCAATTCCAGTGACATGGGTACCTCCTCCTGGAATGCATTGTGACCGGAATCACTGGATTAATCCTCACATGTTAGCACCTCACTAACTTCGTTTTTGATTGTGTTGGTGTCATGTTGAGAAAAAGGTAGAATAAACCTTACTACACATTAAAAGTTAAAAGTTCTTACTAATAGTAGTGAAGTTAGATGGGCCAAACCATCAAACTTATTTTTATAGAAGTTATTGAGAATAATCTTTCTTAAAAAATATATGCACTTTAGATATTGATATAGTTTGAGAAATTTTATTAAAGTTAGTCAAGTGCCTAAGTTTTTAATATTGGACTTGAGTATTTATATATTGTGCATCAACTCTGTTGGATACGAGAACACTGTAGAAGTGGACGATTTGTTCTAGCACCTTTGAGAATTTACTTTATGGAGCGTATGTAAGTTATTTATATACAAGGAAATCTATTTTATGTCGTTGTTTAAGAGAATTGTGTGAAATCATGTAGTTGCAAATAAAAAATAGTTTGAGGCATGA

Publications

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