Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NT5DC1P2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:134272238-134273736  UCSC
Coordinates (T2T) chrX:132597415-132598913  UCSC
Coordinates (hg19) chrX:133406268-133407766  UCSC
Strand +
Parental Sequence NM_152729.3
Parental seq. overlap 1417 bp
Parental seq. overlap (%) 20.5%
Genomic Region Intergenic
Retrocopy Summary NT5DC1P2, located on chrX:134272238-134273736, is a retrocopy of the parental gene NT5DC1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NT5DC1
Full Name 5'-nucleotidase domain containing 1
Also known as C6orf200|LP2642|NT5C2L1
Coordinate chr6:116100833-116249497
Strand +
Gene summary While the exact function of the protein encoded by this gene is not known, it belongs to the 5'(3')-deoxyribonucleotidase family. [provided by RefSeq, May 2010]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NT5DC1P3
Bonobo Pan paniscus NT5DC1P3
Gorilla Gorilla gorilla NT5DC1P3
Orangutan Pongo abelii NT5DC1P3
Gibbon Nomascus leucogenys NT5DC1P2
Green monkey Chlorocebus sabaeus NT5DC1P2
Crab-eating macaque Macaca fascicularis NT5DC1P2
Rhesus Macaca mulatta NT5DC1P2
Baboon Papio anubis NT5DC1P2
Golden snub-nosed monkey Rhinopithecus roxellana NT5DC1P2
Marmoset Callithrix jacchus NT5DC1P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NT5DC1P2
GCTTGCACCCTCCTGGGCCGAGGCGCTCCCCGGTGCTCCCAGTGCAGCCATGGCTCAGCACTTCTCCCTGGACGCCTGCGATGTGGTCGGATTCTACCTGGACCACACCCTGTGTCACTACAACCTGCCCGAGAGCGCCCCACTCATTTATAATAGCTTTGCCCAGTTCTTAGTTAAGGAGAAAGGGTATGATAAGGAATTGCTCAATGTGACCCCAGAGGATTGGAATTTCTGTTGCAAGGGTTTGGCATTGGATCTAGAAGATAGGAACTTCCTTAAACTTGCTGATAATGGCACTGTTCTCAGGGCAAGCCATGGCACCAAGATGATGACTCCAGAGGTGCTGGCAGAGACATATGGCAAGAAAGGGTGGAAGCATTTCTTGTCGGACACTGGAATGGCTTGCCGCTCATGAAAGTATTATTTTTACAACTACTTTGACCTGCCGGGAGCTCTTCTATGTGCCAGGGTGGTGGACTATTTAACAACAAACAATGGTCAAAAAACATTTGATTTTTGGAAGGATATAGTTGCTGCTATACAACACAATTATAAAATGTCAGCTTTTAAGGAAAACTGTGGAATATATATTCCAGAAGTAAAAAGAGATCCAGGCAGATATTTACACAGTTGTCCTAAATCTGTGAAAAAATGGCTTCGACAGCTAAAGAATGCTGGGAAAATTCTTCTGTTAATTACCAGTTCTCACAGTGATTACTGTAGACTTCTCTGCGAATATATCCTCGGGAATGATTTTGCAGACCTTTTTGACATTGTGATTACAAATGCATTGAAGCCTGGTTTCTTCTCCCACTTACCAAGTCAGAGACCTTTCTGGATGCAGAGAATGATGAGGAGCAGGAGGCGCTGCCATCTCTGGATAAACCTGGCTGGTGCTCCCAAGGGAACGCTATCCACCTCTATGAACTTCTGAAGAAAATCAATGGCAAACCTGAACCCAAGGTTGTTTATTACGGCATGCATTCAGATATTTTCCTGGCTCATCACTATAGTAATTGGGAGACAGTTCTTATCCTGGAAGAACTCAGAGGGATGAAGGTGCAAGGAGTCAGAGGCCTGAGAAGTCAGAGCCTCTAGAGAAAAAGGAAAATATGAGGGACCAAAGGTAAAGCCTCTAAATACTTCATCTAAAAAATGAGGCTCCTTTTTTTTTTATTGATTCAGTGTTGGGACTGGAAAATACAGAAGACTCCTTGGTTTGTGCATAGTCTTGTAAGAGAATCAGTACTTACAGCACTATTGTAATTCCAAGTATTGAAATAATCGCAGAATTACCTCTGGACTACAAATTTACAAGATTCTCTTCAAGCAATTCAAAAACAGCTGGGCTACTATCCAAACCCTCCATTGGTCTTATCAAATGATGGGACACTGATAACTAAATAAGTTGTCTTTACTGAAAAATGAAGTGAAGACCCATATATGCAGTAAAAAAAAAATTCAAAAAATACTGTAAAAAGTTTTAAGGAATAAGTTTT
>NM_152729.3
cctgtcccgcagcgtcccgccAGCCAGCTCCTTGCACCCTTCGCGGCCGAGGCGCTCCCTGGTGCTCCCCGCGCAGCCATGGCTCAGCACTTCTCCCTGGCCGCCTGCGACGTGGTCGGATTCGACCTGGACCACACTCTGTGTCGCTACAACCTGCCCGAGAGCGCCCCGCTCATTTATAATAGCTTTGCCCAGTTCCTAGTTAAGGAGAAAGGGTACGATAAGGAATTGCTCAATGTGACCCCAGAGGATTGGGATTTCTGTTGCAAAGGTTTGGCATTGGATCTAGAAGATGGGAACTTCCTTAAACTTGCAAATAATGGCACTGTTCTCAGGGCAAGCCATGGCACCAAGATGATGACTCCAGAGGTGCTGGCAGAGGCATATGGCAAGAAAGAGTGGAAGCACTTCTTGTCGGACACTGGAATGGCTTGCCGCTCAGGAAAGTATTACTTTTACGACAACTACTTTGACCTGCCAGGAGCTCTTCTGTGTGCCAGGGTGGTGGACTATTTAACAAAACTGAACAATGGTCAAAAAACATTTGATTTTTGGAAGGATATAGTTGCTGCTATACAACACAATTATAAAATGTCAGCTTTTAAGGAAAACTGTGGAATATATTTTCCAGAAATAAAAAGAGATCCAGGCAGATATTTACATAGTTGTCCTGAATCTGTGAAAAAATGGCTTCGACAGCTAAAGAATGCTGGGAAAATTCTTCTGTTAATTACCAGTTCTCACAGTGATTACTGTAGACTTCTCTGCGAATATATTCTTGGGAATGATTTTACAGACCTTTTTGACATTGTGATTACAAATGCATTGAAGCCTGGTTTCTTCTCCCACTTACCAAGTCAGAGACCTTTCCGGACACTCGAGAATGATGAGGAGCAGGAGGCACTGCCATCTCTGGATAAACCTGGCTGGTACTCCCAAGGGAACGCTGTCCACCTCTATGAACTTCTGAAGAAAATGACTGGCAAACCTGAACCCAAGGTTGTTTATTTTGGTGACAGCATGCATTCAGATATTTTCCCAGCTCGTCACTATAGTAATTGGGAGACAGTCCTCATCCTGGAAGAACTCAGAGGGGATGAAGGCACGAGGAGTCAGAGGCCTGAGGAGTCAGAGCCTCTAGAGAAGAAAGGAAAATATGAGGGACCAAAAGCAAAACCTTTAAATACTTCATCTAAAAAATGGGGCTCTTTTTTTATTGATTCAGTTTTGGGACTGGAAAATACAGAAGACTCCTTGGTTTATACATGGTCTTGTAAGAGAATCAGTACTTACAGCACTATTGCAATTCCAAGTATTGAAGCAATCGCAGAATTACCTCTGGACTACAAATTTACAAGATTCTCTTCAAGCAATTCAAAAACAGCTGGCTACTATCCAAATCCTCCACTGGTCTTATCAAGTGATGAGACACTGATATCCAAATAAGTTGTCTTTACTGAAAAATGAAGTGAAGACCCATATATGCAGTTAAAAAAAAGTTAATTTTCAAAAAATACTGTAAAAGACTTTAAGGAACAAGTTTTATTGACCAATAAGTTGATATTTGTCCATAGGTCTCCTTTCTATAAATCATCTTGATGTTTAACAACTCTTATTATATTAAAATCTCAGTATCCTAAAACTTAGAACCTTATTGATATTTTCTATACAGTAGTTTTGTGATTAGAATTCACCTGGGGacacacactcacacgcacagtcactcttacacATATGCCTAGTCcagtggttctcaaagtgtgatccatagactaatagcatagcattacctgagaacttgataatgcatatttgcaggccccacgcaaaacctgctgaatcagaagctctgagagtaaggcctaccaatctggtttaacaagcccgtcaggtgattctgatttacagtacagtttgagacccactgGCTAGAACATATcctccagagacttggcttaattggtctgggtaaatatggctgagcgttgttatcttttgttatcttttatatgccctaggaaagtacaaccagaattgaaaaccaactgATCTATACCAGTTCTTTCAATTAATAGTCAAGAACATTGAGTCCAGTGAGATTAAGTGATTTTTGCAGGCTATGAGGTTTTATGCTATTCCTGTGTTCTCCAAAACAAGAAAATAAAAAGACATGACTTATTCTCTGTTCATACAGCAAGTATGGAAAAAAGATGATCTAGAAGTCAACTATCTCAACCTCCATTGTTACCCACTAGGTTTTTTTCTAATAATGTTAAAGGCTATTTAATTTATTTAATCAACTTTAAGCATTACATTCTCAATTggggacaaaaattggttcttggggtgaaaaaatattagatatggcttgtggacttccaatatcatcctatccaacaaaatcttattccttagtattaatttatctcattgggAAGAAATTTGTAGTTAAAACTatttaatgtaatttgaatttaatttctgtaattGGGAAGGAGGGTAATAATGAACAAAAAGTTTGAGAAAAAAATGCTTTAATGGGTTTTACAGGCATGCTACAATCCAGGACTGTGGTGTTCTATGTGCCGTGTATGGTCATATTAGTAGCTATTTGTTGCAAGATACTTGAAGCCAAATGTTTGCAGTATAGGTTCCTGGCTACTGTTTATGCTGTGATTTCACTCTGTCTATCATGGGCAGTATTAGAAAACACACTGGTTTTCACTATCTGGTTTACAAACACTATCATTATTTTACCTGGATTGAAGTGCAGAATTTGGCATATCGATGCATGCAATGGAAAGAAAAAAAATTTGTTAAAATTTGTAAATGTTCAGCTAAATCTCAGATATACTGTGGGATGAGTATCTCAGGGTAAGTAACAAAAAAACAAACAAAAAAAATCACTGAAATTTTTCCCTCACAGTCAGTAGCTTTGTTTGATATTTAACAATAAGTATATGGTGATATACTTGAAATTTATGTCCAGAATGTCACTGGAATATTACAATGAGCATAAATAATCAAGCTTAGGACTAAATGAAAGATACTATCTCATGTATGCTTTAAATAGAGAATTTATTTCTTTTAAAAATAAAGCTATCTTTCCTTATCCATGTTTACTCTGTAAATGGCAAATAATACATCTTTAAATGCTTATGAACTACTGTTAATATGAAAAATGAGAAGTCCAAAATAAGAAATAACTGCACTTTTTGGGCCACTTGAGTAGTGGCGGGGGTTCAGGAGGCAGAATTCAGTTGTCAGAAgttctagtattccctttatcattccacctaaagaccctgaacaagttaccaccaaatttggcttcagttttttccatcttatgaaaggaaaagtttagtttatttctaaatttccttcctttctagcagtcagtatttctTCTAATGAATGTTTTTTTTCTGTAATTAGAAAGACTATAATTAGGCTTTTTAAATTTGTATTTTCATTCTTTGTAAAGAGTGCCAATGGATATGAAGATTAAAAATAATCCAAATCCATAAAAATTAAAAAGAAAATATTAAAGAAGTTATATGAAGCAAAAAAATTGTATAAATGGACAGAAGACATGTAATATTCGCATACAGGCAAACATTCATAATCTAAAGGACACCTAAAAATAGATGTAAGCGAGCGGAGGTTTTCTTTGCTGGCCACTGTTTATCGCATCAGCAGAGGAAAGATCTGAATGACTCAGTGACCAAATGTTTTGTCAGAATCTGGTATTTGGAATACTGAGGTAGTAAAAACTTTATCTGAACCATGAATTACAATCTAAAATCAACTTCTGAGTTTGTTAAACTCTAAACTGAAATCAAGTATTATTTCCCCACCAATATTCATATCCAAAAATAACTTTAAATacacacacacacacacacacacacacTTTTAGTGAACTGGTTTGAATGAAAATAAATTTATATAATTATTTTATATAACAAATCAGCATAAAATGGAAAATCAAACTGCCTCTCTAGATATAATAACCTTCACTGACTGTTGGAAATACATGGATAGCTTTTTAAAATCTTCAGTGTTGGAGTAACAGTCCCTTACATCTTTTCAGCCTCTTGAGTACAAGAAGACTATCATAAGAGTTAGTTCCAGATTGGTGCAAGACTGGAATACACTTGACTGCTTTTATTAAAGCCATGAGGGCATACCAAGTAATTCACCCAGTATGGTCTTATTGCCACCCTTGAAAATCCCTGGGCATGGTCCAGTCCACATAGAATGAATTCAGAAAGGTGTCTCTTGTTGGTCTCTAGAACTATCCTCAGAAATAATAGTAAAACAGTGGTCATGAGTAGCCTcactaggctacttcatgtacattatcttgtttactctctatagcaaccatatgagatgtatataattattaaattgtacagatgggaaaattgaaattcagagagattaaatacaatgcttgctctgtgttacactgttagtaagagagcaatacatgaacccaagtttgatcctcaaaatcacacttttaattacttgatacataatgtCTTCCAATATTGAATCTAGACTAGGGCAAATTCTCAGCCCAAAACCACACTTCAATTTAGCAATAATGTCGTGCTAGGACATGAGAGGGATTAACATTGAAGACACAGCCTCTATCTTTAAGTAATTCATAATTTAGCCAAATATATTAAATATCTGTAATATAAAACTTACCTAGGAAAGTAAAATAGAGATCCAAGAATCAGGAGTCCTAAAGCATATAATGAGTCTGTTCCTCTTGGAAGCCACACATGTCAAGGTCATCAGTAAGCAGGCCTACTCTTTCTTCATATTCTGGGTTAATGTTCACCTTGACTGCTTGGTAAATTTCCCTCACTGGTGCTGAAGTAACCAAAATGGGGAAGGAGTGATGAAAACTCATCTTTGAGTAAGCTTAGTGGGAAATAGTATATCTGGGCCTATAGAGAAGTTGGGTCATTACTTAGAATGACAACTGGAAAAGTACATAGACTGCTTGCCAATCAGTTTGTTGTACCATGTACCTGTTCACAGACTCTTTTCAAAAAACAAGTTTATTTTACTTTTTTTGGTACTTTGGTCATGTTGTTTCCTTGGTAAAGATCAAAGTTGAATAAAGCTTAACAAAGTTTAATAAAGAAAAGGAATAAATTACTATCTAAATGTGTTAAAAGCAATCACCAAGTTTAATCACTTAAAAAATAAATATTCTCTTAACAGAAATGTCAGCGGTTACTTACAATGCTTAGCAGCTAAATTCCATGAGTATAACGTTTAATGTCTTTTTGGTACATTAAATATTCAGTGCCTTTGATGAAGGGAACAAACTGATAATTTCATTCATGTGCAGCAAACATCAAGGTTACATAAGTAAATTCAAATGTGTCAATCTGTAACTGTATGGAGTCCTGTATTAAATCAAGTGATAAAATGTACCCTTCTCAAAGGCTATTCATGAATAAGCATAACCTTCAACTGAGGCCTGAATAGTCATGTGTCAGTAGGGTTTTTGTTAACATTTGTATGCCAAATTTATTACGATAGCTGTGATAGAGTAGAAGTTATGCTAGCTTGAAATCAGAAAACTCAACAGTGAGACTTGCatcttaggcagttctactttctggacctctgttttctcaactatttaaatggaaataataaaacttgtgttacaaggattatcaaagtaatatgtgcacttcgaagtgcctgacataTCTCAGATCTTTTGAGGAGATTGTGAAGCCAGGGAATAAGTAACTGAAACAAGATCAAATATCCATGTCTTAAATTGTGATTCTCTAGGACAGGGACTCAGTAATTAAAAATATAGGCAAGGGTTTGTTTTGGTTTTTGTTTGTTAATGATGAAAACATTTAAGGACGTTGAGTTAACTGGAGATAAAGCAGCAGCACGAGGAGTAATGGGGAGAAGGGCCTGATGAGAAGGTCAGAGAAGCCTTTTATAAGTGTCTGGCTTGCACTGAATGCCCAGAAATGGAAGCGCAAGGAAAGTGTTGTGTGAGGACCAGGGTAATTATGCAGTGTCACCACTACTCACAGGGATTATGGCCTGAGAAACTAAAATGATACTTCTTAGGTGACCAGAGGATGGGAGAACTTCTTAACTGGTTTGGAGGTCCACATAAAGAATAATTGGGGTCTAGAATTAAGGAAGGAAAAGCAATACAAAGAAATGGAGCAGGGCTATAGCAGTGAACCAATTGGTTGGTAAGTGAAACCTGTAAGATGCCTAATTGAGTAATTTAATGACTAATTTTATTAGGCTAAACAGAACAGAAACCATGCTAATCTGTAACAAATAAGTGGCGCCAGCCTATTACAGTGAATGCTATTGGTTAGACTAAAGCAGATAATAAACCAAGTGTAGGAAAAATGACATTTTCTGATTACATCCAGAACAGGCATAGAAAAGGTATAATAAAGCTTGAAACAGGTGGCTGACAATGCAGAAATCAATCACTGAACTgaaaaggtaaaatgaacattgttagaggaatttaggattaagatggatgtagagcttgcaaaagaaaacctagctctctaatacttaaagttctctagccctagaaaaaaatacctcagcaagaaattgcaagtaataattgcACCAAGAGTCAGCATCTATTTTAACTGTATGTTTAATTAAGTTTCTAACTCAAATGAGAAATTTTGGGCCATTTTTGTCAAATTTTTGCTTAGATGGCTACAAATACTTAGCAATTCATTTTCATAGATTTTGTAGCATCCACAAAGCCCTCCTTACTGCAGAGAATGCAGAGGTATTTATCCAATAAACTTTCATGTAATTGCTGCTATACAGCAAAACTATCATTACCGGTAATTAAAGTTGTGATACCTGA

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