Retrocopy Name | COPZ1P1 |
|
Species | Homo sapiens | |
Coordinates (hg38) | chrX:154605857-154606095 UCSC | |
Coordinates (T2T) | chrX:152834758-152834996 UCSC | |
Coordinates (hg19) | chrX:153834110-153834348 UCSC | |
Strand | + | |
Parental Sequence | NM_001271736.2 | |
Parental seq. overlap | 214 bp | |
Parental seq. overlap (%) | 10.8% | |
Genomic Region |
Intergenic |
|
Retrocopy Summary | COPZ1P1, located on chrX:154605857-154606095, is a retrocopy of the parental gene COPZ1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | COPZ1 |
Full Name | COPI coat complex subunit zeta 1 |
Also known as | CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP |
Coordinate | chr12:54325131-54351846 |
Strand | + |
Gene summary | This gene encodes a subunit of the cytoplasmic coatamer protein complex, which is involved in autophagy and intracellular protein trafficking. The coatomer protein complex is comprised of seven subunits and functions as the coat protein of coat protein complex (COP)I-vesicles. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2012] |
Species | Scientific Name | Retrocopy | |
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Chimpanzee | Pan troglodytes | COPZ1P1 |
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Bonobo | Pan paniscus | COPZ1P1 |
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Orangutan | Pongo abelii | COPZ1P1 |
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Gorilla | Gorilla gorilla | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>COPZ1P1 |
ATAAGGGGATGAAGATGTCCCTCTTATGGAGCAGACCGTGTCTCAGGTACTGCAGTCAGCCAAAGAACAGATCAAGTGGTCACTCCTTCAGTGAAGAACTCACCGTTTCTGGCTCCTCACCTCCTTCCAAACAATGCACGTCTGCTGTGAATTTTCATCCGGTTCCCCAGCTGATGCTCTCAGAGTCATCTCGGGAATCACAGGGATCCTTAAATCTCCATCCTGTCTCTGGTTGCCCC |
>NM_001271736.2 |
GCGGCTCCACGTCGGCACCAGCTGCGGGGCAAGATGGAGGCGCTGATTTTGCCCCAGTGGGACTAGGGGAAGGTATCTGGTTTACCAGTGGTGATGGGAGGCTTCAGGACTGAAGGTATGTTCGTATCTCTTCAGGAACCTTCCCTGTATACTGTCAAAGCCATCCTGATTCTGGACAATGATGGAGATCGACTTTTTGCCAAGTACTATGACGACACCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAACATTTTCAACAAGACCCATCGGACTGACAGTGAAATTGCCCTCTTGGAAGGCCTGACAGTGGTATACAAAAGCAGTATAGATCTCTATTTCTATGTGATTGGCAGCTCCTATGAAAATGAGCTGATGCTTATGGCTGTTCTGAACTGTCTCTTCGACTCATTGAGCCAGATGCTGAGGAAAAATGTAGAAAAGCGAGCACTGCTGGAGAACATGGAGGGGCTGTTCTTGGCTGTGGATGAAATTGTAGATGGAGGGGTGATCCTAGAGAGTGATCCCCAGCAGGTGGTACACCGGGTGGCATTAAGGGGTGAAGATGTCCCCCTTACGGAGCAGACCGTGTCTCAGGTGCTGCAGTCAGCCAAAGAACAGATCAAGTGGTCACTCCTTCGGTGAAGACCTCACTGTTCCTGGCTCTTCATCCTCTTCAAAAAATTTGCATGTCTGCTGTGAATTTTCATCTAGTTCCCCAATCGATGCTCTCAGGGTCATCTCGGGGATCACAGGGATCCTTAAATCTCCATTCTGTTTGTGGTTGCCCCCTCAACCTCCCCTACACCCTTCCTATTCTTTTTCATTCTTCTTGCAGTTCTGGGAGTAAAGCTCCCAGCATATTTAGATAATAGGGCAGGGGAAGCACCCTCTTTCTTTCTAGACTGGATTATGCTCACATGCTCCCTTGCCCTGACATTTTTGTAAATTCTGTGCCCTTTGCTGTAGCTACACTTCAGATTAAAGTAGGAGAAAGAATGTGCTGAGTGTTTTCCTCCCTTTGCCTCTACCTGGCCCTCATCCCAACAGCCCAGCAAGGGGAGAGAGAAAGAGAATTCTTTTCTATAGAACGAGTGGGGGCGGGGATGGGTAGGGATTTATCCAATCTAAGCCCTAACCCCACTTAGTGACCTCAGTGTTTTCTTCCATTCCTTCTTACTGCCCTGTCCTCTGCCTTGGAAGAGGCTTTGGGAATAGTTCATAGGGAAGGGACAACATGGAAGAAACAGCGATTTAAATTGTATTGAACAGGGCATATAAAATGCATTCTGTACCCTGATCTGGCATATAGCTTCAAAACTGCAGTGGCGAGTGTCCATCTCTTAGTTAGCTACCTTAACTGTCCACCCTTACTACCTGTGGGATCGTTGCCTGGTTTGTCTTCTCTGTGTCCTGGAGCAAAGCCAGTTCCTAAAACTAAAACTCCATTCTAGTCTTGGGAAGAAAAGTTTCTACTCAGAACTGGGGAAGGAGTGGAACTTATGACTTGGGCCTCTAGGCTGTCTCTGTCCCCTCAGCTCCCCGACATGCATTTACTCTCTGCCGTGGGTCTGCAGTCGCTGCAACCTACCCTCTCTCTGCCTCAGCCTTACACCCAAGCAGTAGGTCTGTGCTCTCCCTGTCTCTAGGTCGCTGAGAGAGGTGCTTTTCTTCATAAAACCTTTGGGGTTTGGATTTCCCCAGGAAGATGGAGAATGGAATACTCACTCTTGGGTCTAATCTTTCCCCTTGACCCAGAACTTCCTCCCCACAAAAATGCCTTTAAAAACCTTCCTGAGACTTAAGCATTCTGCCCCACTTACTAACTGCCAGTTCTCCAGCACTGAGGTGGGGCAGATAACGGGGCATATTTAAGGGGGCATCTTTGTGTAAAAGATGCATGGAGTCAGGAGAAAACCACCTTCATAAACTGCTCTGTGCAAAGAGGAATAAAACATTTTTTCCAAA |
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