Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name CCNYL5
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Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:65818250-65822345  UCSC
Coordinates (T2T) chrX:64244722-64248817  UCSC
Coordinates (hg19) chrX:65038092-65042187  UCSC
Strand -
Parental Sequence NM_001330218.2
Parental seq. overlap 1776 bp
Parental seq. overlap (%) 38.6%
Genomic Region Intergenic
Retrocopy Summary CCNYL5, located on chrX:65818250-65822345, is a retrocopy of the parental gene CCNYL1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CCNYL1
Full Name cyclin Y like 1
Also known as -
Coordinate chr2:207711640-207756174
Strand +
Gene summary Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within flagellated sperm motility; regulation of protein kinase activity; and spermatogenesis. Predicted to be located in membrane. Predicted to be active in cytoplasm and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CCNYL1P2
Bonobo Pan paniscus CCNYL1P2
Gorilla Gorilla gorilla CCNYL1P3
Orangutan Pongo abelii CCNYL1P2
Crab-eating macaque Macaca fascicularis CCNYL1P2
Rhesus Macaca mulatta CCNYL1P2
Baboon Papio anubis CCNYL1P2
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the GTEx database for expression quantification.

Related Sequence

>CCNYL5
CGTTCAAACAAGTTTTTGTAAAGGTTTGTGGTTTGTAGCATTTATACTTCTACATATATCAAAGCTTAAAATTACACTAAACTTTTGGAATACCTTGTATCTCCATAAAATGCCCTCCTCTTTTTAAAAGTAGCTACTTGCAGGGTTGTGCTCTATATGCTTTGATCACCAAAGTTTCTTTAATGTAAAGGAAGATTTTGAAGAGCAGTGTTAATTAGCATGTAATAAAAGGAAATGGACCCTAATGATAGAAGGTGATATGAACAGTTCTTTTATCATCCTACGTTACCAAGCTGTAGGTGTCCCATTAAGTCCTGCTATTTAAGAAACTACTTACATAACCCTTAGGAAGTCTTACTTCAGGCTTTAAAAGGCAAGGAGCAAATAATTTTAGGAGACTGATAACAAAGTCACCTAAATTTGAAATATTAAAAAGAGATTAGTGTTCTAAACTAGATGAAATCTATTTCTgTGCAAAATTAAATGCGAAAGAAAAGCTGGCACTTGTCTCCTGAATAGTTTAATTTTTTGTTTCAGTCACTTTTGAAGATAGCAGACTTTCACTGAGGCAAACAATTAAAAGCTTTATATTAAAAATTTGCAAAATGAACTTCTATTGGGGTCCATGTTGCATTTCTTGTGAACTAAGAATGATGCTTCTCATTTTCTGATAATTTTTCCCTTGTTAAATAAGTGTATTAATACATATTTTCATAATGCCAACCAACATGGTGGCTTAGTGACAATGAAAAAAAAAAGTAAAGCGGTTTTAAGCTTTAATATAGCTCAGGCCCTCGAAGGCACTGCAGCGTGAGTATAAATGCTATGAACCTTTTAAAAAACATCGTTTGAAAAAACCGCGCCATTGTTGGGGGAGGGGGCTGCTGCTGAGCGAGGCAGAGTAGGGCGCAAGCGAAGGCGCCAGAGGCGGCGGAGAGGGGCGGAGGCGCCCCATGGGGAACACGCTGACTTGTTGCGTGTCCCTCAATGCCAGCCCCAAGCTGGGCCGGCGCGCCGGATCCCCGCGTCCGACATCTACGAGGCGGCGTCCGGGGACGAGGTGGCGGTAGCGCCTGCTGCTGCGGAGCCTCCCGAGTTTGATTTCGGAGAAGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCAAAGATTTAGCATTGGAGTCAAACCCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGCGCAAATCTCAAACGGATGTGAGAGAAAAGAGGAAGAGCAACCATTTAAACCATGTATCTCCAGGGCAGCTTACTAAAAAGTATAGCTCATGCTCAACAATATTTCTATATGACAGCACAGTCAACCAGCCTAACCTTAGAACCACAGTAAAATGTGTGACCTTAGCAATATATCACCACATAAAGAACAGAGATGCAAATAGATCCCTGGATATTTTTGATGAGAGATCACATCCACTTACACGAGAAAAAGTTCCAGAAGAATAGTTTAAGCATGATCCTGAGCACAAATTTATTTACAGATTTGTTCATACTCCTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTAACTTTGGTTTACTTAGAAAAGCTTTTAACTTATGCTGAAACCAACATTTGTCCCACTAACTGGAAAAGGATTGGTCTGCGAGCCATTCTTGCCTCCAAGGTTTGGAACCATCAGGCTGTATGGAATATGGACTACTGCCAGATCTTCAAGGACATTACAGGTGAGGACATGAATGAAATGGAAAGGCATTTTTTGATGCTTCTTCAGTTTAATCTTAATGTTCCTGCCAGTGTTTATGCCAAATACTACTTTGATCTTCGCTCCTTAGCAGATGACAATAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAAAAAGAGCACAGAACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGGAGAGCCCTATGAGAAGGTCTTTCAGCACTGATGACTTCATTGGTATTCAGCACTCTAAAGCCATCCTCTCTTAAAGGGAGAAATGAGGGGTTATAACGTCACAGGACCTTTATCTACAAAGACTGGAGAAATATCACCTTTCCTGCTCAAAACCCAGCAAAATTAGTGTTTTCATTAAAAGGATAGATCTCGAATTCAAGAGATTCATGGACAACAAGGATTGTACTCCATAGAAAAGAATGGGACCTTGTCAATGCAACAAAACATTCTTCTGTCCTTTTTAATGTAAACAGAGTTACAAAAAACACTCCAAAGTGAAGGTTCCTTTCCCACACAGATATTTGCTTACTATATGGGCTGATAGCTGTGAACTATGTAAGGTTTTTTTAAACAATAGTTTAAATTTTTAAACTTTAAAGACACTAACCATATAACTTTTATGCTTTTTCCAATTTTTCTCCCTCCCCACATTTTGCTGCATATGCCTTTAGAATCAATGCAGTATTATCATTAAAACATGGTACTCTAAAGACACTTAGGAGCAGACTGCACCATTGTTAGGTAATGAAGGATTCTTCCTCCCTACCATTGAAGCTGCTAGTCATAGGCAATCATTTTAAGCCAAAAACCTGCTGGATAACATTTGTCATTCATATTCTTTGCAAACATTACTTTAGCATTTTAGCATGTTTGGGGTCATAAACAGAGGAAGTATCGTTATTGATATCTACTTCTTTTATTTAt
>NM_001330218.2
GCAGACGAGTCAGCTTAAGGGAGGCGGCGGCAGCGCGGCGGTGGGGGTGCGGCCGAGGCCCGAGCCCTGCCCGGGGCCGGGCCGCGGGGCGGGCGGGCGAACCGCGGGCGAGGCGGCGTCTGCTTGCGCGGTGCAGCCCCAGCGTAGCCCGGGGCTGCCGGTGCCGGCCGCGCCATTGTTGGGGGAGGGGGCGGCTGTTGAGGGCGGCGGAGTAGGGGGCGAGCGAAGGCGGTGGCAGAGAGGAGCGGAGGCTTCCCATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGGCGGAGCTGTACTGCGCGTCCGACATCTACGAGGCGGTGTCCGGGGACGCGGTGGCGGTAGCGCCCGCTGTGGTGGAGCCTGCCGAGTTGGATTTCGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCGAAGATTTAGCTTTGGAGTCAAACCCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCAAATCTCAAACGGATGTGCGAGAAAAGAGGAAGAGCAACCATTTGAACCATGTATCTCCAGGGCAGCTTACTAAAAAGTATAGCTCATGCTCAACAATATTTCTAGATGACAGCACAGTCAGCCAGCCTAATCTTAGAACCACAGTAAAATGTGTGACCTTAGCAATATATTACCACATAAAGAACAGAGATGCAAATAGATCCCTGGATATTTTTGATGAGAGATCACATCCACTTACACGAGAAAAAGTTCCAGAGGAATACTTTAAGCATGATCCTGAGCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTAACTTTGGTTTACTTAGAAAGGCTTTTAACTTATGCTGAAATCGACATTTGTCCCACCAACTGGAAAAGGATTGTTCTGGGAGCCATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATGTGGACTACTGCCAGATCCTCAAGGACATTACAGTTGAGGACATGAATGAAATGGAAAGGCATTTTCTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCAGTGTTTATGCCAAATACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAGAGCACAGAACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGTGCTGATAACTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCTTAAAAGGAGAAATGAGGGGTTATAACGTCATGGGACCTTCATCTACAAAGACTGGAGAAATACCACCTTTCCTGCTCAAAAACCAGCAAAATTAGTGTTTTCATCAAAAGGAAAGATCTCAAATTCAAGAGACTCATGGACAACAAGGATTATACTCCACAGGAAAGAATGGGACCTTGTCAATGCAACAAAACACTCTTCTGTCCTTTTTAATGTAAACAGAGTTACAAAAACCACTCCAAAGTGAAGGCTCCCATCCTACACACAGATATTTGCTTACTGTGTGGGCCGATAGCTGTGAACTATGTAAGGTTTTTTAAACAATAGTTTAAATTTTTAGACTTTAAAGACACTAACCATATAACTTTTATGTTTCTTCCAGTTTCTCTCCCTCCCCCCGCATTTTGCTGCATATGCCTTTAAAATCAATGCAGTATTACCATTAAAACATGGGACTCTAACTAAAGCCACTTAGGAGCAGACAGCAGCGTTGTTAGGTACTGAAGGGTTCTTCCTCCCTACTGTTACCATTGAAGCTGCTAGTCATTGGCAATCATTTTAAACCAAAAAGCTGCTGGATAACATTTGTCATTCATATTCTTTGCAAGCATTACTTTAGCATTTTAGCATGTTTGGGGTCATAAACAGAGGAAGTATCAGTTATTGATATCTACTTCTATTGGAGTCCATGTTGCATTTCTTGTGAACTATAAATGGTGCTTCTCATTTTCTGATAATTTTTCTCTTGCTAAATAAATGTATTAAAAGATATTTTCATAATGCCAACCAACATGGTGGTTCAGTGACGATGAGAAAAAGTGAAGCAGTTTTAAGCTTGAATATAGTTTGGGCCCTCCAAGGCACTGCAGCATGAGTATAAATGCTATAAACCTTTAAAAAACATGATTTGAAAGTtttttgttttgttttgtttgtttttaaagagatgggggtcttactgcgttgtccaggctggagtgcagtggcttttcacaggtgcaatcattgtgcactcactgcagcctagaacttcctggtctcaagccatcctctagcctcagccacacaagtagctgggactacaagtgcAACTGGCACCTGTCTCCTGAATATTAAGCTTTTAATTTTTTGTTTCGGTCACTCTTGATAGCAGACATTGACTGAAACAAAAAATTAAAAGCTTTATATTcaaaatttgcaaaatgaagctgggtgtggtggtgcacgcctatagtcccagctacttgggaggctgaggctggaggattgcttgaggtcaagtattggaggctgcagtgtaccatgatggtgcctataggaatagctactacactccaacctggacaacgttatcaagaccccatctcttagaaaaaTGCAAAATTAAATGCAAAAGAAATGggctgggcatagtgattcatgcctgtaatctcagtaccctgggaggctgaggtggaaggattgcttgagtgcaggagttcaagaccagtctaggcaacatagtgagaccctgcctgtaaaaaaaaataataaaaatagttggatatggtggcatgtgtctgtagtcccagccactctggaggctaaggtgggaggatcagtagagcccaggaggtcaaggctgcagtgggccatgatcatgtcactgctctccaacctgggcgacatccagaccctgtctcaaagaaaaaagcagaagaaaaaTGTTCAGACAAGGTTTTGTAAAGGTTTGTAGCATTTATATTTCTACAAGTATCAAAGCTTAAAATTACACTGAACTTTTGGAATACCTTGTATCTCCATAAAATGCCCTCTTTTTAAAAGTAGTTACCCGCAGAGCTGTGCTCTATATGCTTTGATTACCGCAGTTTCTTTAAAGGAAGATTTTGAAGAGCAGTGTTAATTAACATGTAATAAAAGGAATTGGACCCTAATTATAGAAGGTGATATGAACAGCTGTTTTATCATCCTACATGCTACCAAGCTGTAGGTGTCCCATTAAGTCCTGCTATTTAAGAAATACTTACATAACCCTTAGGAACTCTTCAGGCTTTAAAAGGCAAGGAGCAAATAATTTTAGGAGACCGATAATGTCACCTAAATTTGAAATACTAAGAAGAGGTTAGTGTTCTCAACTATGTGAAATCTGTTTCTCCTACTTTCTCAAATCTAATCCTAGGAATCTTGCTTATAAACAAAGCATTTCTGGGACAGGAGTACTTCCTCTATTATAGCAATGCTTCACATCATATTGTGCTGCAGTTTCCATCATTTTTAAAGGACAGAGACATAAATGATAAATAATGGTATACAAATATTACAATCTACCACCTCAAAAAAACAAATATTGTTTATGGAATTCAGAGTTTGGAGATTCAAGTATTGATTGCAGTTTTATTTTGAAAAGAATGCTACAATTTATGTGGTTTTTATTTCTCATGTTTATATTAAAAGCTAATAAACTCTATTTTAATTAAAA

Publications

PMID - Link Title
No publications available for this retrocopy