Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name TRAPPC2LP1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:70361415-70362383  UCSC
Coordinates (T2T) chrX:68794878-68795846  UCSC
Coordinates (hg19) chrX:69581265-69582233  UCSC
Strand -
Parental Sequence XM_017023270.1
Parental seq. overlap 462 bp
Parental seq. overlap (%) 17.1%
Genomic Region Intragenic (KIF4A)
Retrocopy Summary TRAPPC2LP1, located on chrX:70361415-70362383, is a retrocopy of the parental gene TRAPPC2L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TRAPPC2L
Full Name trafficking protein particle complex subunit 2L
Also known as HSPC176|PERRB
Coordinate chr16:88857127-88862678
Strand +
Gene summary This gene encodes a protein that interacts with the tethering factor trafficking protein particle (TRAPP complex). TRAPP complexes mediate the contact between vescicles and target membranes, and thus, are involved in vescicle-mediated transport of proteins and lipids. The encoded protein is related to the X-linked trafficking protein particle complex 2. A related pseudogene is located on the X chromosome. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes TRAPPC2LP1
Bonobo Pan paniscus TRAPPC2LP1
Gorilla Gorilla gorilla TRAPPC2LP1
Orangutan Pongo abelii TRAPPC2LP1
Gibbon Nomascus leucogenys TRAPPC2LP1
Green monkey Chlorocebus sabaeus TRAPPC2LP2
Crab-eating macaque Macaca fascicularis TRAPPC2LP2
Rhesus Macaca mulatta TRAPPC2LP2
Baboon Papio anubis TRAPPC2LP2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104655977P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TRAPPC2LP1
CCTCCCAAGATGGTGATATGCATCCCGGTGATCACCAAGGAGAATTACCCTCTCTACATCCGCAGCACCCCCACGGAGAAAGAGCTGAGTTTCCAGTACATGGTGCACACATCTCTGGATGTGGTGGATGAGAAGATCTCCTCAATGGGGAAGGCCTTGGTCAACCAGAGAGAGGTCTATCTGGACCTGCTCTACCCCACAGAGGACTACAAGGTCTTGCCTCATAAGTCACTAGAGACTCTCGACCAGTCCCTTTGGACAAATCACTTGAGACCATGGAGTTCAAAGACGTTCCAAGAGCAGTAATGTAGCTTGTCCATGGTGACATTTACCAGTAGCCACTATTTTACAAAACATGGCCTCTACAGAGGAGGTCCGCCTTATTCATGAAGTCTCTGGTTTTGCAGTTAACTTTCTGGACCAGGCATTGATTCACAAAGAGGGTGAGGCATCCCAGGTGCACACAGAGACTCAGAGTCTGAATGGCTCAGCTTCCGGAGCCAGAATTGGGTAAAGCTTAGCTGCCTGCCCTTTGCTTCTCCAGTAAACACCAGTCATCCCAGTGAAGTATGTAGGCATGCACCCAGTATGGTCACTGCAGGACCAGCCCAGCCTGGGCACTTCCTGTGATTCAAGGTTGCCAGGCTTCTCCAAACTGAGGGCACACAGAGGGCCCTCAGCTGGCAGGTTCTTTACCTGCTGTCCCAGCAGTCCTTGTCTTACAAGTGCATTCCCTAACCAGCTATGCAGACAGGGCTACACTACCATCTCCAAGGTGAAGTTTGTCATGGTGGTGAATTCCTCCAACACAGCTCTTCGAGACAATGAAATTCACAGGATGTTCTGGAAGCTGCACAACTCCTACATAGATGTGATGTGCAACCCCTTCTGTAACCCGGGGACAATATCCAGTCCAGGGACTTTGATAACATGGTGATGTATATAATGATACAGGTCTGCTGAGTGAGA
>XM_017023270.1
GTGCCTGGCGCCGAGCCTCCCAAGATGGCGGTGTGCATCGCGGTGATTGCCAAGGAGAATTACCCCCTCTACATTCGCAGCACCCCTACGGAGAACGAGCTGAAGTTCCACTACATGGTGCACACATCTCTGGACGTGGTGGATGAGAAGATCTCCGCAATGGGGAAGGCCCTGGTCGACCAGAGGGAGCTGTACCTGGGCCTGCTCTACCCCACGGAGGACTACAAGGTTGCCACATTTCTCCAAAGTGAGGGCCCACAGAGGGCCCTCCACCGGCAGTCCCTGTGTTACGAGTGCCTTCCCTAACCAGCTGTGCAGATACGGCTACGTCACCAACTCCAAGGTGAAGTTTGTCATGGTGGTAGATTCCTCCAACACAGCCCTTCGAGACAACGAAATTCGCAGCATGTTCCGGAAGCTACACAACTCCTACACAGACGTGATGTGCAACCCCTTCTACAACCCGGGGGACCGCATCCAGTCCAGGGCCTTTGATAACATGGTGACGTCGATGATGATACAGGTGTGCTGAGTGAGCTGTGCTGCCAGCCATCGCAGAGGAGCCCGCGCACGACTGTGGTGGGGCCGTCGGTCTGTTCTGGTTGCCTCTTCCTGAATGGGACGCCTGGGGCTTTCAGGGCAGGCAGCTGTGCATGTTCTCTCAACTAAAGGTCTTGTGAGAGGAGATTTGGCTTTTTCCTTCCGTGTCAGCCAAGGATTTAATTAAGAAGAATTCAACTAAGGACTTTTCTGGGGTGTGGGCAGAGGTTTGGGATCAGATGGCGCAGGTAGCCTGTCCTCAGTTGTCCCAAAGGGGCAGAGGCAGGGGTGCCTGGAGCCAAGAGTTCCTGAGCCTGCAGGACCTGTGACCATGTGGGTCACCCACTGGCTGAACAGGTGGGCTGGTCTGGAGGGGGTGGCCTCCTGAGCCCAGAACCAGCCTAGGATCTAGGGGCACAAGGGGAGCCGGCGTGGCTTCCCACAGGGGAGGGCCCTCCTCTTTCTGGACTTGGCCTCCATTCTTTGCATCTGGCTCAATGTCTGGATTCCGCCCGGCCTTAAAAGGAGCCCTTGTGAAACCTGGGAAGCCTCGTGGCCCCGCGGCGTTGGCTCAGCTGCAGCCCTGGTCCTAAACCTTGGAGCGCAGACTTGAGGCACCCCCTCCTGCCTGTTGGTGCTGAGGGGGTTGGGTGCTGTGTCACTTGATGACGTGGCTGACTACCACCCAGGGCAGCGGCCGAGCCCATAGTGGCGTCAGTGCCGCCGGCGTCCTTGGGGTCCAGCGGTCAAGGCTCAGCCCGCTGAGGGGACCCCCCCGGAGTTGGTTCCAGCACTGGTCCAGGACTGGAGAGTTTCTCAAGGACCTTGAGGACCCCAGAAGCCCTTGCAGCAGGAAAGGCTGTAAGGGGGGGTCAGCCTAGGGCAGGACCTAGGGAGGGGAACTTTCTTGATACATATTTGCCTTTTCATCCCATCTAGCAAGCACAGTGTTAATTTTAGAAATTATAGAAGAAAAAATCAGCAAGGAGTGTGGGAAAACTGCATGCCCCAGGCCTCCCCCGCCCCAGGGTGAATTGGAAGCCCTGGAATGGGCCGAGGCACACCAGGCAGCTGATCTGGGTGCATGTGGGCCACAGACCACTCTCACAAGGTTAAATCTTTAACAAGAGCCTCATGTTTGTTAGGAGAAGGTGGGACCCCAGCCCAAGCACTTCCCCATTGCAGCCTGGCATGAAATCTTTGCCTTTTAGTGGGGATCACTCCTGCCCGAGTCCTGGCTGTGGTGGGGACTCTGCAAGTTGCTAACCCAGCGTCCATTCTCTTTCCTCCGTACTAACAGAACCCCGGTGCCTCTGCCCAGTTCCAATAGCGGGCAGACGAGAGCCATGTCCTGGGCTCCCTTGCAGCCCGGGGTGTGCAGCTGTGGCGTGGAGGTGGGTGGTGCTGGGAGAGACTTGCAGGGAAGCTCCTGTGAAGGGGACTCAGCTGCCACATGCAGGACCCttcccctttgccttcttcctgcctggaacatggatgtgatggctggtgctgggacagctgtcctgagagcgtgaggaaagggtcacaccctaaggacagtggagcagaacacaggaaggaccctgggcctttgctgacgcagaacgcgggaaggaccctgggcctttgctgacataccagccccagactacttaaattcagctttttttttaatgtgagaaaataaatgcacccctctctggtttaa

Publications

PMID - Link Title