Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name ZNF254P2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:93493621-93493805  UCSC
Coordinates (T2T) chrX:91943939-91944124  UCSC
Coordinates (hg19) chrX:92748620-92748804  UCSC
Strand +
Parental Sequence NM_001278664.2
Parental seq. overlap 154 bp
Parental seq. overlap (%) 3.9%
Genomic Region Intergenic
Retrocopy Summary ZNF254P2, located on chrX:93493621-93493805, is a retrocopy of the parental gene ZNF254. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZNF254
Full Name zinc finger protein 254
Also known as BMZF-5|HD-ZNF1|ZNF539|ZNF91L
Coordinate chr19:24033416-24129968
Strand +
Gene summary Zinc finger proteins have been shown to interact with nucleic acids and to have diverse functions. The zinc finger domain is a conserved amino acid sequence motif containing 2 specifically positioned cysteines and 2 histidines that are involved in coordinating zinc. Kruppel-related proteins form 1 family of zinc finger proteins. See ZFP93 (MIM 604749) for additional information on zinc finger proteins.[supplied by OMIM, Jul 2002]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ZNF429P1
Bonobo Pan paniscus ZNF254P2
Gorilla Gorilla gorilla LOC101143366P2
Gibbon Nomascus leucogenys LOC100586585P2
Green monkey Chlorocebus sabaeus LOC103234297P1
Crab-eating macaque Macaca fascicularis LOC102132491P2
Baboon Papio anubis ZNF724P1
Golden snub-nosed monkey Rhinopithecus roxellana ZNF85P2
Orangutan Pongo abelii Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZNF254P2
TCCAGGTCTTGTCTTCATTGCTCTTCATCCTCTGCTTCTAGAAGCAGAGCCTTTGTGACCTTGTGACCTGCAGGTATTGGGAGATCCACAGCGAGGATGCAAGGACCCCTGGAAGCCTAGAAATGGTATTGCTGTCTCTAAGCAAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAG
>NM_001278664.2
GCCTTTGTCTCTCGCTGTCGCCGGAGTCCCAGGTCTGTCTTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGTGGCGCTGTTACCAGCAGGTATTGGAGATCCACAGCTAAGATGCCAGGACCCCCTAGAAGCCTAGAAATGGTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAACAAGGGAAAGAGCCCTGGAATATGAAGCGACATGAGATGGTGGATGAACCCCCAGGTATGTGTCCTCATTTTGCTCAAGACCTTTGGCCAGAGCAGGGCATGGAAGATTCTTTTCAAAAAGCAATACTGAGAAGATATGGAAAATATGGACATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGATGAGTATAAGGTGAACAAAGAAGGTTATAATGGACTTAACCAGTGTTTCACAACTGCCCAGAGCAAAGTATTTCAATGTGATAAATATTTGAAAGTCTTCTATAAATTTTTAAATTCAAACAGACCTAAGATAAGACATACTGAAAAGAAATCTTTCAAATGTAAAAAACGTGTCAAATTATTTTGCATGCTTTCACATAAAACCCAACACAAAAGCATTTATCATAGAGAGAAGTCCTACAAATGTAAAGAATGTGGAAAAACCTTTAATTGGTCCTCAACCCTTACTAATCATAGGAAAATTTATACTGAAGAGAAACCTTACAAATGTGAAGAATATAACAAATCTCCTAAGCAACTCTCAACCCTTACTACACATGAAATAATTCATGCTGGAGAGAAACTCTACAAATGTGAAGAATGTGGTGAAGCTTTTAATCGATCCTCAAATCTTACTACACATAAGATAATTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGGCAAAGCATTTATCTGGTCCTCAACCCTTACTGAGCATAAGAAAATTCATACTAGAAAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCATTTATATGGTCCTCAACACTAACTAGACATAAGAGGATGCACACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAGCCAGTCCTCAACCCTTACTACACATAAGATAATTCATACTGGAGAGAAACGCTACAAATGCTTAGAATGTGGCAAAGCTTTTAAGCAACTCTCAACTCTTACTACACATAAAATAATTCATGTTGGAGAGAAACTCTACAAATGTGAAGAATGCGGCAAAGGTTTTAATCGATCTTCAAATCTTACTACACATAAGATAATTCATACTGGAGAGAAACCTTACAAGTGTGAAGAATGTGGCAAAGCATTTATCTGGTCCTCAACCCTTACTAAACATAAGAGAATTCATACTAGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCATTTATATGGTCCTCAACCCTAACTAGACATAAGAGGATGCACACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAATCTTTTAGCCAATCCTCAACCCTTACTACACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACTGGTCCTCAACTCTTACTAAACATAAGATAATTCATACTGAAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAAGCAGTCTTCAATCCTTACTAACCATAAGAGAATTCATACTGGAGAGAAACCCTATAAATGTGAAGAATGTGGCAAATCTTTTAACCGGTCTTCAACTTTTACTAAACATAAGGTAATTCATACTGGAGTAAAACCCTACAAATGTGAAGAATGTGGCAAAGCATTTTTCTGGTCCTCAACCCTAACTAAACATAAGAGAATTCATACTGGAGAGCAACCCTACAAATGGGAAAAATTTGGCAAAGCCTTTAATCGGTCCTCGCACCTCACCACAGATAAGATAACTCATTGGAGAGAAATCTTACAAGTATGAATAATGTGCCAAAGCCTAAGAAAACCCTCAATTCTTAATAGATATAAGATTATTCCTACTGGAGAGAAACTACAAACCTGAGAGAGGCGCTAATGCTTTTGACAGTACCTAAAACTTTAAAGAAAATCATTCTGCTGAAAAATCCTAGAAATGTGAAGAATGTGAAAAAGCCTTTAAATGATTGTCACACTTGATTGTAGGTAAGATAATTCATACTGGAGAAAACTACCAGTGTGAACAACGTGGCCAAGCTTCGACAATGCTCACACCCTATTGCACAGGAAAGCATTTATACTTGAGAAGAAATGTACAAATATTGGCAAAGTAAAAAATCCATTAACACCTGCTCACATCTTACTCAAAATTGTAGAGTTCATAGTAAATAAAAGCATTAAAATTCTAATTACTCTCAGAAGATCTGTCAGAAAGTATGTCTTTAAAGTATAGAAGAGCATTTATTTTGAAAAAAACATTACACATATGAAGAGGATTGTAATATCTTTACTTGTACCACAGATCTTATTGTACACATTTTATACTAGAGAAAAACCCTCAGGCAGTTGTTAAAATTTTGTTGAACATCAGGGAGTTTAAGAAAACCCTGCAAGTATAATGAATTTGGAAAAACATTTTTTCAAAAACTACAAATTATAAAACACCAAAGTGTTCATACTAAAATATATTTTTGCAGATACATTAAATATGAAAGATATTCAATCCAAAATTAAGTCTATGTAAATATCAGGGAATAATTCACAGTAGAAATATCTAGGGCATTCAAGCTTTAGACATTACACTAAATCAGAGTGCTGAGTATAGAAAATAATACAAACAGATTTGTCTAAACATTTGTATATAACTTTAAAAATAGAATATTTTTTGGAGGGTTATAATTACATTCAAAGTACTTTTTTTTGAAAATACAGATTTTTTTTAAAAGTGAATAATGTGTTCAACTCTTAAATTCATGCTGTTTCATCATTGCTGGTGTATTCATATGTGAAAGCATGTGACTAATTGTTGCTGCATAAAAGATATGAGATTCTTTTTTATTAGGCATTATTTATGACCTTTTCTATGAAAAGATAAGGACATTAAAATGTAAGATGCGTGAGGAAAATTTAGGTAGAGAGGCTCTTTGTGGTTAACTTATAATATTGAGTGATGCATGAGGTAGGTGTTCAGAATAATATTCCTCTGCATTATTATGAATGAAAAGCATTCTTAATTTTAGTTAAAATTAAGTTAGTCATATGTTATTTTATTAATTGTACTTCTATGAAATAATATGCAGTCTATTTTTAAATTATAAATTATGTGTGAACTTAGCTTTTCAATTCAACATTTTTAACATATTAAATACTATTGTGAATTCAATGAAGTGTTCTTATGCCACTAACTTTAACCTATTCCCTTACTCAAGGATGTAGGTAAAAGATGGTAACAATACACTATTTGGTAAGATAATGTACTGACATCTCTAGCAATCTTTTTTGCCAGTGGCTTTAAATTGCCAATAAGTTAAAGAATATTGTTCCTATGGGTTAAATTTTTATTCTTATTTTCACATTTAAATTTATTTttcttaatttttgtggatacataatatgtgtatatatgtatgccatatatggtatattttgatgcaggcatactctatataataatcacattagaggaaatgagatatccattacctctagcatttattctttttattacaagcaattcaattgtacacttttagttatttttaaatttacaatgttattgATTACAGGGTCATTTTTATGGTCATAATAAAAAATTTTATACAAACGTGTAAAATCTATACATTTCTGAGTTCTGAATAAATATTTTTAAAAATTTTAATATATTTTTCTTTGAATATGTGACCTTTGCCTGCAAGCACATATGGACTCTTAGAATTGATTTACATAAAATTAAATATATACTTCTATTAAAGATAAACCTTAGGTGTAAATAAA

Publications

PMID - Link Title