Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CDYLP2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:9402751-9405751  UCSC
Coordinates (T2T) chrX:8970602-8973602  UCSC
Coordinates (hg19) chrX:9370791-9373791  UCSC
Strand +
Parental Sequence NM_001368126.1
Parental seq. overlap 1904 bp
Parental seq. overlap (%) 48%
Genomic Region Intergenic
Retrocopy Summary CDYLP2, located on chrX:9402751-9405751, is a retrocopy of the parental gene CDYL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CDYL
Full Name chromodomain Y like
Also known as CDYL1
Coordinate chr6:4706138-4955544
Strand +
Gene summary Chromodomain Y is a primate-specific Y-chromosomal gene family expressed exclusively in the testis and implicated in infertility. Although the Y-linked genes are testis-specific, this autosomal gene is ubiquitously expressed. The Y-linked genes arose by retrotransposition of an mRNA from this gene, followed by amplification of the retroposed gene. Proteins encoded by this gene superfamily possess a chromodomain, a motif implicated in chromatin binding and gene suppression, and a catalytic domain believed to be involved in histone acetylation. Multiple proteins are encoded by transcript variants of this gene. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes CDYLP2
Bonobo Pan paniscus CDYLP2
Gorilla Gorilla gorilla CDYLP2
Orangutan Pongo abelii CDYLP2
Gibbon Nomascus leucogenys CDYLP2
Green monkey Chlorocebus sabaeus CDYLP2
Crab-eating macaque Macaca fascicularis CDYLP2
Rhesus Macaca mulatta CDYLP2
Baboon Papio anubis CDYLP2
Golden snub-nosed monkey Rhinopithecus roxellana CDYLP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CDYLP2
ATTGAAAAGATTGTTGACAAAAGGAAAAATTAAAAAGGGAAGACAGAGTATTTGGTTCAGTGAAAAGGCTACAACAGCGAGGACGACACTTGGGAACCAGAGCAGCACCTCGTGAACTGTCAGGAATACATCCACGACTTCAACAGACACCACACGGAAAGGCAGAAAGAGAGCACATTGACCAGAACAAACAGGTCCTCTCCCAACAATGCTAGGAAACAAATCTCCAGATCCACAAACAGCAGCTTTTCTAAGTCCTCTCCTAAGGCACCAGTGATTGGGAGAGATCACGAATCCAAAAACAGCCAGCTGTTTGCTGCCAGCCAGCAGTTCAGGAAGAACACAGCTCCGTCTCTCTGCAGCCAGATGAAAATGGACCTAGTGAAGTCAGGTATCAAGATCCTCATGCCTAAGAGCCCCATTAAGCAGGACGCAGTGAATGGCTTTCAGAGTGAGAGCTCCAAAAAACTGGACCCCACAGAGCAGGGTCAGGAGGAATGGTAGTACCCAAAGTGGCAGCGGAAAAGCCAGACAAAGCTTTATTGGGCCCTGGTACTGAGCAGGCCAGGATGGGGAGCAAGCCTGGATACACCTGCTAGTGCCTCAGGTGCATGGCCCCGTAAGTGCAGCCATGGCCACAGGCCTACTCGTTAACAGGAAAGCTACATCTACATTCATGGATGCATTAACAGCCAGTGGGACAACCAACATACAGACATCTGTTACAGCAGTAACTGTCAGCAAAAGGAAATTTATTGACAACAGAAGAGAACAGCCTTTTAACAAACGATTGCATTTCAGTGTGAGGCAAACAGAAAGTGCCTAAGGATACAGAGTTATTGTGGCCGGGACAAAAGATGGCTTCACCCACATCTTATTCACTAGATCAACAGGGAATAACTCAGTAAATACAGCTGTAATGAAAAAAGTCTACCAGCTCTGACAACCACTGCTGATTACAGCAAGCTTGTACTGCTCAGCGCCTTTAACAGTGTCTTCTGTTGTGGACTTGACTTTATTTATTTTATGCAGTGTTTGACAGATGACAGAAAAAGAGAAAGCATTAAAATGGGAGAACCTATCAGAAACGTCGTGAATAATCTATGGCCATATCACTCTGAAAGTGACAGAAAAAAAGAAAGTGTTAAATAGGCAGAAGCTAACAGAAACTTCGTGAATAATCCCTCACAAGGAACTTTGTGAATACTATTACTCCGTTCAAAAAACCTGTTACTGAAGTAAAAGAAGTTATCTGAAACATCATGAATAATCTATGACCATACGACCCTGAATATGATACAAAAAGAGAAAGCATTAAAATGGCAGAAGAGAAGCTACCAGAAACGTCGTACATAAgGAACTTCGTGAAGGCTATCATTTCACTCAAACTGAATATTATTGAAGCAGTCACTATCCCAGCCATTCGACTAGAAGCATCCGTATTGCCCCTTTATGATATGGTTTAGGCTAATCAAAAGACTTGGTTTCCAACAACCTCTTCTACCTCTGAGCAGATTCCAGACAGCTGATTTACCATTACGTTTCCGAAATCATGGGACGACCAGCTGCAAGCGAGACGATGCTCAGTGGGTTGAAACTGATCACACAGAAGGCATTTGGCAACGGCCTTCTCTCCCAGCTGTTTGGGTCCTGGACCTTCACTCAGGAAATTGGTGGCTCAGATCAAGAAGCTTGTCTCATGTAATCGAATAGTGCTGGAGGAATCCAAAGCCTTGGTGTGCTGCAACATGAAGAGGGATCTGGAACAGGCCAACGAGAGAACATGTGAAGTACTGAAGAAAATCTGGGGTTCTGCCCAAGGGTTGGACTCCATGTGAAAGGACTTAGAAAGGAAGATGAATGAGTTTCGAGTGTCAGGCTGCACACGGACCACATCGGGTTCCAGCTGAGAAGAACACCATTGCTTCCATCTGTCCTTATCCATTCTCACAGCCTGAAACAAGCTCACTGGTAGCTTATGCTTGCAAGCAGGACTGGGAACATTCACGCTATTTATTCGGGAGTACTGACTCCAGAAAGTACAGCAACCTTGGACTGCTCAGCGCCATTGGTAGGGTCTTCCGTGGTGCACTTGGCCTTATTTATTTTTTACGACATTTGACAGAGGACAGAGAGAGAGCAAGCATTAAAACGGCAGAAGCTACTGGAAACGTCGTGAGCAATCTACAGTCATACCACCGTGAACGCTCCCAATCTTGTCTGGTCTCTGAAGTACAGAGTAGATGCGATTGGGCCCAGGTTGGGGCCTGTTTCATTGTTGGATAGAAGGAACTTCCTGAATGCTTTGTTCCGCTTAAGCTGCGTATTGTTGAAGCACTCAATGGCCCAGCCATTCGACTAGGAGCATCCGTATTGCCTCTTTGTGATATGGTTTAGGCTAATGAAAAGACTTGGTTTCCAACACCCTCTTCTACCTCTGGGCAGATTCCAGATAGCTGATCTACCATTACGTTTCCGAAATCATGGGACGACCAGCTGCAAGCGAGACGATGCTCACTGGGTTGAAACTGATCACACAGGAGGCATTTGGCAACAGCCTTCTCTCCCAGCTGTTTGGATCCTGGACCTTCAATCAGGAAATTGGTGGCTCAGATCAAGAAGCTTGTCTCATGTAATCGAATAGTGCTGGAGGAATCCAAAGCCTTGGTGTGCTGCAACATGAAGAGGGATCTGGAACAGGCCAACGAGAGAACATGTGAAGTACTGAAGAAAATCTGGGGTTCTGCCCAAGGGTTGGACTCCATGTGAAAGGACTTAGAAAGGAAGATGAATGAGTTTCGAGTGTCAGGCTGCACACTG
>NM_001368126.1
GGTCGCAAGTAGGAAGCTTTCTGCACTACACCGGAGAGGGGAGCCGCGATccggccgcgccgcccgcacgccgccgcgcccgccccagcccgcccggccCCGCGGCGGGGCGCGATGAGCCCGAGCGCGAGCCGGCCCGCCGGGGAGTGAGCGCGGGGCGCCCAGGGCGCGTTGCGTAGCTGCTCCTGCGCACAACCCCGCCGCGCCGCCGGCCCGCACTGGCCGCGGAGTGCAAGAGGCTCGTCCGTGCCCAGCGCCCGGCCGGCCGCGGGAGCAGGAAGCGCAGGCCACGCAGGACCCAACTGAAACAAAGTGTcggccgcccggcgccggcgcccgccccgaccctgcccctcccgcccgcaactccgccgcccaccATGGCTTCCGAGGAGCTGTACGAGGTTGAAAGGATTGTTGACAAAAGGAAAAATAAAAAAGGGAAGACAGAGTATTTGGTTCGGTGGAAAGGCTATGACAGCGAGGACGACACTTGGGAGCCGGAACAGCACCTCGTGAACTGTGAGGAATACATCCACGACTTCAACAGACGCCACACGGAGAAGCAGAAGGAGAGCACATTGACCAGAACAAACAGGACCTCTCCCAACAATGCTAGGAAACAAATCTCCAGATCCACCAACAGCAACTTTTCTAAGACCTCTCCTAAGGCACTCGTGATTGGGAAAGACCACGAATCCAAAAACAGCCAGCTGTTTGCTGCCAGCCAGAAGTTCAGGAAGAACACAGCTCCATCTCTCTCCAGCCGGAAGAACATGGACCTAGCGAAGTCAGGTATCAAGATCCTCGTGCCTAAAAGCCCCGTTAAGAGCAGGACCGCAGTGGACGGCTTTCAGAGCGAGAGCCCTGAGAAACTGGACCCCGTCGAGCAGGGTCAGGAGGACACAGTGGCACCCGAAGTGGCAGCGGAAAAGCCGGTCGGAGCTTTATTGGGCCCCGGTGCCGAGAGGGCCAGGATGGGGAGCAGGCCCAGGATACACCCACTAGTGCCTCAGGTGCCCGGCCCTGTGACTGCAGCCATGGCCACAGGCTTAGCTGTTAACGGGAAAGGAGTGACTGCCAGCAAAAGGAAATTTATTGACGACAGAAGAGACCAGCCTTTTGACAAGCGATTGCGTTTCAGCGTGAGGCAAACAGAAAGTGCCTACAGATACAGAGATATTGTGGTCAGGAAGCAGGATGGCTTCACCCACATCTTGTTATCCACAAAGTCCTCAGAGAATAACTCACTAAATCCAGAGGTAATGAGAGAAGTCCAGAGTGCTCTGAGCACGGCCGCTGCCGATGACAGCAAGCTGGTACTGCTCAGCGCCGTTGGCAGCGTCTTCTGTTGTGGACTTGACTTTATTTATTTTATACGACGTCTGACAGATGACAGGAAAAGAGAAAGCACTAAAATGGCAGAAGCTATCAGAAACTTCGTGAATACTTTCATTCAATTTAAGAAGCCCATTATTGTAGCAGTCAATGGCCCAGCCATTGGTCTAGGAGCATCTATATTGCCTCTTTGCGATGTGGTTTGGGCTAATGAAAAGGCTTGGTTTCAAACACCCTATACCACCTTCGGACAGAGTCCAGATGGCTGTTCTACCGTTATGTTTCCCAAGATAATGGGAGGAGCATCTGCAAACGAGATGCTGCTCAGTGGACGGAAGCTGACAGCGCAGGAGGCGTGTGGCAAGGGCCTGGTCTCCCAGGTGTTTTGGCCCGGGACGTTCACTCAGGAAGTGATGGTTCGCATTAAGGAGCTTGCCTCGTGCAATCCAGTTGTGCTTGAGGAATCCAAAGCCCTCGTGCGCTGCAACATGAAGATGGAGCTGGAGCAGGCCAACGAGAGGGAGTGTGAGGTGCTGAAGAAAATCTGGGGCTCGGCCCAGGGGATGGACTCCATGTTAAAGTACTTGCAGAGGAAGATCGATGAGTTCTGAGTGTCGGGCTGCCCACTGGTGACACCGGGATCGGGCTGAGCAGGAGAACATCACCGGCTCCAGTTCCCCTGATCCATTCTCACAGCCTGAAACAAGCTCACCCGTAGCTTACGCTTGGAAGCAGGACTGGGAACATCCACGCTATTTATTATCGAGGAGTTTTAAAGTACTGTAACTTTAAAATAAATAACTACAAAGCTTCTTTGTCCAAACGTCATTATTTTATACTTATATACACGCAGGTGTAAAAGTATAAAGGTGAGCACTAGACTGCTCTTAGAAGCTCTAATTTTTGTTTTCTTTGGCTAGTACTGTATAAAAAACAGAATTGTGTTTTATTGGTTTTGGATGACAGAAAAGTCTGGAATAATGTTTGTTTTCCTCATTTCTTCCTTCTAGAACACAGAATCTAAAGGGGTATTAGCCAGCCTCGCCTCCCTGCCCCACGTAGAGACACAGAGTGATGTGAGGCGTTGGCTTTTTCTCCAAGAAGGTACAGATACCTCAGATTCGGGAAACTCAAAATCAAAAGACTTAGCTTCTAGGATAAATACTTCTGATGAAAAATCCGCTGAGGAGCATACCCCAAACCAGACATATGCTTAGGATTCATGCTGAGATATCAATTGGTTTCCCCTTCTTTTTAAAATACGTCCAGTTCTTACCCAGTTAACATGAAGAAACCACTGTCTCTAGAAGAAAGCTTGTTTTGCAGTATTAGTGAATCACTGAATAGCTTAAGTATGACTATCTAAGTTATAAGTTAGTCTTTAGTGGGTTTTAAATAGTTTTTCTGACCCTTCTGAAAAATAACTACATAAGTGCTTCTTGTTGCTGGGTGAGAAATACTACTTTATAGACAGTTTTGGTTTTCTGTTTGCAGATATGATTGATGTATTTCACCAAAATAAAATATTTTTATGTTTATAAAGTGTAATTTTTAGGTTCACTTAGAATATATTTTATTTAATAAGTTAAAATTCTTTTGGCACACTATTAAATGCAAAAACTCCTTTCAAAACAAAAAAGAACTACCTTATATTCAACATTTAATGTTCTTGGCCTCTGCTTTTATGTCTATACAATATACTGAGTTCAGTATGGTGTCCAAGAGTGCCCTGTGTGGATAGACATGTGCACTCCTTCCAGGAGTGGGTACTGATTCCAGACTCCAGATGCCTATTATTAGTTAGGCTTCTGAGCTTGCAATCATATTGAATGTATGAAGAGCGAAATCAAATTCTTATTTTTGTACAGTTTTGAAGTTTATACTTAGAACTGACCACCTCCCCGGCCACGCGGAGAGCTGTACAGTGTGTAAATCTGCCTTTATCTTGGATTGATTGGTACAGTATTTTTGCATCTGTGGGACCTACCTTTTCGTTCAGTAGTTTGAACTATATATAAACTGTACAATCTGTAAAGTTTTTATAGAATAAATATTCAGCTGTGAAAACTGGTTAAATAAAACTAATATTTCTTAACACA

Publications

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