Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name KAT7P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:95971760-95974344  UCSC
Coordinates (T2T) chrX:94417360-94419944  UCSC
Coordinates (hg19) chrX:95226759-95229343  UCSC
Strand -
Parental Sequence XM_011524235.3
Parental seq. overlap 2521 bp
Parental seq. overlap (%) 97.2%
Genomic Region Intergenic
Retrocopy Summary KAT7P1, located on chrX:95971760-95974344, is a retrocopy of the parental gene KAT7. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KAT7
Full Name lysine acetyltransferase 7
Also known as HBO1|HBOA|MYST2|ZC2HC7
Coordinate chr17:49788681-49835026
Strand +
Gene summary The protein encoded by this gene is part of the multimeric HBO1 complex, which possesses histone H4-specific acetyltransferase activity. This activity is required for functional replication origins and is involved in transcriptional activation of some genes. In both cases, the acetylation of histone H4 helps unfold chromatin so that the DNA can be accessed and replicated or transcribed. [provided by RefSeq, Oct 2016]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes KAT7P1
Bonobo Pan paniscus KAT7P1
Gorilla Gorilla gorilla KAT7P1
Orangutan Pongo abelii KAT7P1
Gibbon Nomascus leucogenys KAT7P1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KAT7P1
TTCCTGGAAAGGATTCTTGTAGTGTCTGCCATGGAACACAGACAGACCTATGGGAACACAGGGGAACCTCTTTTAGAAAACTTGACAAGCGAGTAAGACTTGGATCTTTTCCGAAGAGCACAAGCCCGGGCTTCAGAGGATTTGGAGAAGTTAAGGCTGCAAGGCCAAATCACAGAGGGAAGCAACATGATTAAAACAATTGCTTTTGGTCGCTATGACCTTGATACCTGGTACCATTCTCCATATCCTGAAGAATATGCACGGCTGGGACGTCTCTATATGTGTGAATTCTGTTTAAAATATATGAAGAGCCAAATGATACTCCGCCAGCACATGGCCAAATGTGTGTGGAAACACCCACTTGGTGATGAGATATATCGCAAAGGTTCAGTCTCTGTGTTTGAAGTGGATGGCAAGAAAAACAAGATCTACTGCCAAAACCTGTGCCTGCTGGCCAAACTTTTTCTGGACCACAAGACATTATATTATGATGTGGAGCCCTTCCTGTTCTATGTTATGACAGAGGCGGACAACACTGGCTGTCACCTGATTGGATATTTTTCCAAGGAAAAGAATTCATTCCTCAACTACAACGTATCCTGTATCCTTACTATGCCTCAGTACATGAGACAGGGCTATGGCAAGATGCTTATTGATTTCAGTTATTTGCTTTCCAAAGTTGAAGAAAAAGTTGGCTCCCCAGAATGTCCACTCTCAGATCTGGGGCTTATAAGCTGTTGCAGTTACTGGAAAGAAGTACTTCTCCGCTAACTGCGTAATTTCCAAGGCAAAGAGATTTCTATCAAAGAAATCAGTCAGGAGACGGCTGTGAATCCTGTGGACATTGTCAGCACTCTGCAAGCCCTTCAGGTGCTCAAGTACTGGAAGGGAAAACACCTAGTTTTAAAGAGACAGGACCTGATTGATGAGTAGATAGCCAAAGAGGCCAAAAGGTCCAACTCCAATAAAACCATGGATCCCAGCTGCTTAAAATGGACCCCTCCCAAGGGCCCTTAAAGCGACCTGTCATTCCGAGCCAGCGAACCCCAGCAGTAGGAATCCGTACCTTAGGGATCTGTCGGTCATTTCTGTTGCTCTTGTGATTGGCAAGTACAGTATCCTTTGGGAAGGCCATCCCCCTCAGGACTGTCCTGGCTCCGATCTTTGTGTACACTGCAGACACTGGTTCTGAGGAACTGTTGTTTCGGCCTCAGTGAGGTTGCCTGGATGGGATCTGTATTAGACTTGAGTGCAGGTCTCTCAGCACTGACCCAAGGAGTTCTGTTATGGTACTGTACCTGTCCAGTCACTGGTTCTCTCCTCATGTCCTCTCACCCCATGAGGTTGTATTGTGTCTTCTAAGCGTGGTACTAGTGCTTGCCACCTGGTCACCAGACCTCCAAATATGGCTGCCACCACCAGGACCTTTCCAGTTACTCCTTATATGTGTGTTCTATGGAGGGGCAGGGAAGAGGTGGCACTTGTGATTGTGTGTAGATTGGCAGGGGGTCCATTCACTTTGGGTTCCATCTTGCTTTAAATTTCTTTCCTTCATTTTGATTAAGAGACCTCTTTTTGATCTGTATTGGGCTAACCAGAGCCAAATACTTTTGAAGAGTTTCCCAGGGACTAGTCATGGTAATAGCATATAATTGATCTGAATGAGATGGAGAGAAGAATGAAGAGGTGGTGGTTCTGGGTTTGATTTGAGTTCACCTGTGGGCAGTGGGCAGTGTCTTGGTGAAAGGGAGCGGATACTACTTTTTGCCTCACTGTAAAGTACCCACTAGTAAATATTTCATTCTCTCTTTACTCCCACTTTTTACGTTTGCAGATGCCAAAATAATGTCCACTTCTCCCTTTCATGCTGCATGTTAACTGGTTAATTATACTGCAGAAAACTTTTCACCTCCACTAGTCTGATACAGTACATCTGTACTTCCATATACCTTGCACTGATTTTGTCTGAATGCCCTGGGAGAAGTTGAAAATGACTGAAAGTGACTTCCGTATCTCAGCCCATGACTCAGCAAGGCAGAATGGCCACCCCTGCCAAGGTTTGCTTCTCTTTTCGACAGTGCCTCACCCTCCCTCTAGGATTAAAGTGCTTCTGCTTTTCCATGAACTCCTCCTCCATTTCCTTTTTGGGATTTGTCACCATCCTTCTATTCTCTGGTCTTCTATTTTTGGTGTTGTTCAAGTGAAGGAAGAGATGTTCCCTCTAATTTCTCTCTAGCCCATTATAACCTGCTATCTTCGGGCAACTTTTGATGTATGACATGTCACCCTTCCCAACTTGGTCTCCTCCAACATGCTGTCTTCATGTGGAGCCCTCACCACAATCCCTGACTCCGGTCATTTGTGCCTTTCTCTTGTCATCTCTGTACACTACTTATATTCACTGTGGGTTGAGGGAGCTAATTTTAAGCATGTTCAGTGGCAGCTCCCCTCCAGTTTCAGTGTCACTGTTAAAATTTATCCAAAAGCAACTTCACTAGGGGTTTTCTTAAGGGGTAAAGGCCTTTTACAGAAGCTAAACCCTTCCCCACATGTGGTAGAATGTGCTCTTCTGTATCTACTCCTCA
>XM_011524235.3
TTCCTGGAAAGGATTCTTGTAGTGACTGCCATGGAACACAGACAGACCTATGGGAACACACGGGAACCTCTTTTAGAAAACCTGACAAGCGAGTATGACTTGGATCTTTTCCGAAGAGCACAAGCCCGGGCTTCAGAGGATTTGGAGAAGTTAAGGCTGCAAGGCCAAATCACAGAGGGAAGCAACATGATTAAAACAATTGCTTTTGGCCGCTATGAGCTTGATACCTGGTATCATTCTCCATATCCTGAAGAATATGCACGGCTGGGACGTCTCTATATGTGTGAATTCTGTTTAAAATATATGAAGAGCCAAACGATACTCCGCCGGCACATGGCCAAATGTGTGTGGAAACACCCACCTGGTGATGAGATATATCGCAAAGGTTCAATCTCTGTGTTTGAAGTGGATGGCAAGAAAAACAAGATCTACTGCCAAAACCTGTGCCTGTTGGCCAAACTTTTTCTGGACCACAAGACATTATATTATGATGTGGAGCCCTTCCTGTTCTATGTTATGACAGAGGCGGACAACACTGGCTGTCACCTGATTGGATATTTTTCTAAGGAAAAGAATTCATTCCTCAACTACAACGTCTCCTGTATCCTTACTATGCCTCAGTACATGAGACAGGGCTATGGCAAGATGCTTATTGATTTCAGTTATTTGCTTTCCAAAGTCGAAGAAAAAGTTGGCTCCCCAGAACGTCCACTCTCAGATCTGGGGCTTATAAGCTATCGCAGTTACTGGAAAGAAGTACTTCTCCGCTACCTGCATAATTTTCAAGGCAAAGAGATTTCTATCAAAGAAATCAGTCAGGAGACGGCTGTGAATCCTGTGGACATTGTCAGCACTCTGCAAGCCCTTCAGATGCTCAAATACTGGAAGGGAAAACACCTAGTTTTAAAGAGACAGGACCTGATTGATGAGTGGATAGCCAAAGAGGCCAAAAGGTCCAACTCCAATAAAACCATGGATCCCAGCTGCTTAAAATGGACCCCTCCCAAGGGCACTTAAAGTGACCTGTCATTCCGAGCCAGCGAACCCCAGCAGTAGGAATCCGTACCCTAGGGATCTGTCTGTCATTTCTCTGTTGCTCTTGTGATTGGCAAGTACAGTATCCTTTGGGAAGGCCATCCCCCTCAGGACTGTCCTGGCTCCGACCTTTGTGTACACTGCAGACGCTGGTTCTGAGGAACTGTTGTTTCGGCCTCAGTGAGGTTGCCTGGATGGGATCTGTATTAGACTTGAGTGCAGGTCTCTCAGCACTGACCCAAGGAGTTCTGTTATGGTACTGTACCTGTCCAGTCACTGGTTCTCTCCTCATGTCCTCTCGCCCCATGAGGTTGTGTTGTGTCTTCTAAGCGTGGTACTAGTGCTTGCCACCTGGTCACCAGACCTCCAAATATGGCTGCCACCACCAGGACCTTTCCAGTTACTCCTTATATGTGTGTTCTATGGAGGGGCAGGGAAAAGGTGGCACTTGTGAGTGTGTGTGGATTGGCAGGGGGTCCATTCACTTTGGGTTCCATCTTGCTTTAAATTTCTTCATTTTGATTAAGAGACCTCTTTTTGATCTGTATTGGGCTAACCAGAGCCAAATACTTTTGAAGAGTTTCCCAGGGACTAGTCATGGTAATAGCATATAATTGATCTGAATGAGATGGAGAGAAGAATGAAGGGGTGGTGGTTCTGGGTTTGATTTGAGTTCACCTGTGGGCAGTGGGCAGTGGGCAGTGTCTTGGTGAAAGGGAACGGATACTACTTTTTGCCTCACCGTAAAGTACTCACTAGTAAATATTTCCTTCTCTCTTTACTCCCACTTTTTACGTTTGCAGGTGCCAAAGTAATGTCCACTTTTCCCTTTCATGCTGCATATTAACTGGTTAATTATACTGCAGAAACCTTTTCACCTCCACTAGTCTGATACAGTACATCTGTACTTCCATATACCTTGCACTGATTTTGTCTGAGTGCCCTGGGAGAAGTAGAAAATGATTGAAAGTGACTTCCGTATCTCAGCCCATGACTCAGCAAGGCAGAATGGCCACCCCTGCCAAAGTTTGCTTCTCTTTTCAACAGTGCCTCACCCTCCCTCTAGGATTAAAGTGCTTCTGCCCTTCCACGAACTCCTCCTCCATTTCCTTTTTGGGATTTGTCACCATCCTTCTATTCTCTGGTCTTCTATTTTTGGTGTTGTTCAAGTGAAGGAAGAGATGTTCCCTCTAATTTCTCTCTAGCCCATTATAACCTGCTATCTTGGGGCAACTTTTGATGTATGACATGTCACCCTTCCCAACTTGGTCTCCTCCAACATGCTGTCTTCATGTGGAGCCCTCACCACAATCCCTGACTCCGGTCATTTGTGCCTTTCTCTTGTCATCTCTGTACACTACTTATATTCACTGTGGGTTGGGGGAGCTAATTTTAAGCATGTTCAGTGGCAGCTCCCCTCCAGTTTCAGTGTCACTGTTAAAATTTATCAAAAAGCAACTTCACTAGGGGTTTTCTTAAGGGATAAAGGCCTTTTACAGAAGCTAAACCCTTCCCCACATGTGGTAGAATGTGCTCTTCTATATCTACTCCTC

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