Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CD24P4
Plot displaying the genomic locations of a retrocopy (in chrY) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrY:18990639-18993171  UCSC
Coordinates (T2T) chrY:19897143-19899675  UCSC
Coordinates (hg19) chrY:21152525-21155057  UCSC
Strand -
Parental Sequence XM_024446293.1
Parental seq. overlap 1727 bp
Parental seq. overlap (%) 52.7%
Genomic Region Intergenic
Retrocopy Summary CD24P4, located on chrY:18990639-18993171, is a retrocopy of the parental gene CD24. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CD24
Full Name CD24 molecule
Also known as CD24A
Coordinate chr6:106969831-106976855
Strand -
Gene summary This gene encodes a sialoglycoprotein that is expressed on mature granulocytes and B cells and modulates growth and differentiation signals to these cells. The precursor protein is cleaved to a short 32 amino acid mature peptide which is anchored via a glycosyl phosphatidylinositol (GPI) link to the cell surface. This gene was missing from previous genome assemblies, but is properly located on chromosome 6. Non-transcribed pseudogenes have been designated on chromosomes 1, 15, 20, and Y. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2014]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CD24P4
ATCAAAATGCTTTTTATTTCTGCATATGTTGAATACTTTTTACAATTAAAAAAAAAGATCTGTTTTGAAGGCAAAATTGCAAATCTTGAAATTAAGAAGGCAAAAATGTAAAGGAGTCAAAACTACAAATCAAGTATTTGGGAAGTGAAGACTGGAAGCTAATTTGCATTAAATTCACAAACTTTTATACTCTTTCTGTATATACTTTTTTTTCTTTAAAAAACAACTATGGATCAGAATAGCCACATTTGGAATACTTTTTGTTATCAGTCAATATTTTTAGATAGTTAGAACCTGGTCCTAAGCCTAAAAGTGGGCTTGATTCTGCAGTAAATCTTTTACAACTGCCTCGAAACACAGAAACCTTTTTAAAAATAGACACTCCCCGAAGTCTTTTGTTCGCATGGTCACACACTGATGCTTAGATGTTCCAGTAATCTAATATGGCCACAGTAGTCTTGATGACCAAAGTCCTTTTTTTCCATCTTTACAAAACTACATGAGAACAAACAGATCGAACCGTTTTGAAGCTACTGTGTGTGTGAATGAACACTCTTTTGCTTTATTCCAGAATGCTGTACATCTATTTTGGATTGTATATTGTGTTTGTGTATTTACGCTTTGATTCATAGTAACTTCTTATGGAATTGATTTGCATTGAACACAAACTGTAAATAAAAAGAAATGGCTGAAAGAAGGTGGGGGCTTCAGGGCCGCGGAGGGGGTCCCCTTAGGGTGGGCCGTCTCCTCCTCGCCCGCCGCAGGCAGGAGCGCGGGGGACCGAAACCGTGTAGTTTGCAGCGTCAGGCAGCGGGTCCGCGCCCAGCGAGCGGCTCCCCAGCTCCTGGGAGGATGCGGACCCGGGACGCCCCCGTGAGCTCACTGCGCCTGGCTGACACGAGGCGCTCACAGAACAAAGCAAGGGCTTCGGGGAGGGCGCGGCCGCGGGGCCGAGCGCGCAGATCGCTCCGGACCGGGACACCGCCTGCGAGGAGCGCCGACCAGCCGGGAAGGGTTCGCGCTAGGCGGCGCCCGGGTCCCGTCGGCCAGGGTCTCGCCGGCTCGCCGCGCTCCCCACCTTGCCTGCGCCCGCCCGGAGCCAGCGGTTCTCCAAGCACCCAGCATCCTGCTAGACGCGCCGCGCACCGACGTAGGGGACATGGGCAGAGCAATGGTGGCCAGGCTTGGGCTGGGGCTGCTGCTGCTGGCACTGCTCCTACCCACGCAGATTTATTCCAGTGAAACAACAACTGGAACTTCAAGTAACTCCTCCCAGAGTACTTCCAACACTGGGTTGGCCCCAAATCCAACTAATGCCACCACCAAGGCGGCTGGTGGTGCCCTGCAGTCAACAGCCAGTCTCTTCGTGGTCTCACTCTCTCTTCTGCATCTCTACTCTTAAGAGACTCAGGCCAAGAAACGTCTTCTAAACTTCCCCATCTTCTAAACCCAATCCAAATGGCGTCTGGAAGTCCAATGTGGCAAGGAAAAACAGGTCTTCATCGAATCTACTAATTCCACACCTTTTATTGACACAGAAAATGTTGAGAATCCCAAATTTGATTGATTTGAAGAACATGTGAGAGGTTTGACTAGATGATGGATGCCAATATTAAATCTGCTGGAGTTTCATGTACAAGATGAAGGAGAGGCAACATCCAAAATAGTTAAGACATGATTTCCTTGAATGTGGCTTGAGAAATATGGACACTTAATACTACCTTGAAAATAAGAATAGAAATAAAGGATGTGATTGTGGAATGGAGATTCAGTTTTCATTTGGTTCATTAATTCTATAAGGCCATAAAACAGGTAATATAAAAAGCTTCCATGATTCTATTTATATGTACATGAGAAGGAACTTCCAGGTGTTACTGTAATTCCTCAACGTATTGTTTCGGCAGCACTTATTTAATGCCGATATACTCTAGATGAAGTTTTACATTGTTGAGCTATTGCTGTTCTCTTGGGAACTGAACTCACTTTCCTCCTGAGGCTTTGGATTTGACATTGCGTTTGACCTTTTATGTAGTAATTGACATGTGCCAGGGCAATGATGAATGAGAATCTACCCCCAGATCCAAGCAGCCTGAGCAACTCTTGATTATCCATATTGAGTCAAATGGTAGGCATTTCCTATCACCTATTTCCATTCAACAAGAGCACTACATTCATTTAGCTAAACGGATTCCAAAGAGTAGAATTGCATTGACCGCGACTAATTTCAAAATGCt
>XM_024446293.1
tgcttgaaagttttcacaataagatggataggaaaaAAGTATTCCACCAAAATCTAAAGAGTGATGACGAATCTCCTCTTTGTGCCGGTTCATTAAATTGCCTAATGGCAACTACGGATAAGTAAATGCCTTTATCTCGAACGGTTCTGCTCTTTAAACGAATGACGGGCAACAGAGACCGAAAAAGTGTATCCCCAGGAATTCGAGAGGGACGGTGAATTGTAGTGGGACCGCCAGGAGGGGAGGTTCCTGCCCCCGAGTAGAACCTGGGAGCAGAGCCGCTCGGGGAGGGCGGTGGGGGCTTCAGGGCCGCGGAGGGGGTCCCCTCAGGGTGGGCCGTCTCCTCCTCGCCCGCCGCAGGCAGGAGCGCGGGGGACCGAAACCCTGTAGTTTGCAGCGTCAGGCAGCGGGTCTGCGCCCAGCGAGCGGCTCCCCAGCTCCTGGGAAGATGCGGACCCGGGACGCCCCCGTGAGCTCACTGCGCCTGGCTGACACGAGGCGCTCACAGAACAAAGCAAGGGCTTCGGGGAGGGCGCGGCCGCGGGGCCGAGCGCGCAGATCGCTCCGGACCCGGACACCGCCTGCGAGGAGCGCCGACCAGCCGGGAAGGGTTCGCGCTAGGCGgcgcccgggtcccgtcggccaggGTCTCGCCGGCTCGCCGCGCTCCCCACCTTGCCTGCGCCCGCCCGGAGCCAGCGGTTCTCCAAGCACCCAGCATCCTGCTAGACGCGCCGCGCACCGACGGAGGGGACATGGGCAGAGCAATGGTGGCCAGGCTCGGGCTGGGGCTGCTGCTGCTGGCACTGCTCCTACCCACGCAGATTTATTCCAGTGAAACAACAACTGGAACTTCAAGTAACTCCTCCCAGAGTACTTCCAACTCTGGGTTGGCCCCAAATCCAACTAATGCCACCACCAAGGCGGCTGGTGGTGCCCTGCAGTCAACAGCCAGTCTCTTCGTGGTCTCACTCTCTCTTCTGCATCTCTACTCTTAAGAGACTCAGGCCAAGAAACGTCTTCTAAATTTCCCCATCTTCTAAACCCAATCCAAATGGCGTCTGGAAGTCCAATGTGGCAAGGAAAAACAGGTCTTCATCGAATCTACTAATTCCACACCTTTTATTGACACAGAAAATGTTGAGAATCCCAAATTTGATTGATTTGAAGAACATGTGAGAGGTTTGACTAGATGATGGATGCCAATATTAAATCTGCTGGAGTTTCATGTACAAGATGAAGGAGAGGCAACATCCAAAATAGTTAAGACATGATTTCCTTGAATGTGGCTTGAGAAATATGGACACTTAATACTACCTTGAAAATAAGAATAGAAATAAAGGATGGGATTGTGGAATGGAGATTCAGTTTTCATTTGGTTCATTAATTCTATAAGGCCATAAAACAGGTAATATAAAAAGCTTCCATGATTCTATTTATATGTACATGAGAAGGAACTTCCAGGTGTTACTGTAATTCCTCAACGTATTGTTTCGACAGCACTAATTTAATGCCGATATACTCTAGATGAAGTTTTACATTGTTGAGCTATTGCTGTTCTCTTGGGAACTGAACTCACTTTCCTCCTGAGGCTTTGGATTTGACATTGCATTTGACCTTTTATGTAGTAATTGACATGTGCCAGGGCAATGATGAATGAGAATCTACCCCCAGATCCAAGCATCCTGAGCAACTCTTGATTATCCATATTGAGTCAAATGGTAGGCATTTCCTATCACCTGTTTCCATTCAACAAGAGCACTACATTCATTTAGCTAAACGGATTCCAAAGAGTAGAATTGCATTGACCACGACTAATTTCAAAATGCtttttattattattattttttagacagtctcactttgtcgcccaggccggagtgcagtggtgcgatctcagatcagtgtaccatttgcctcccgggctcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccatgcccggctaatttttgtaattttagtagagacagggtttcaccatgttgcccaggctggtttcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacaggcttgagcccccgcgcccagccATCAAAATGCTTTTTATTTCTGCATATGTTGAATACTTTTTACAATTTAAAAAAATGATCTGTTTTGAAGGCAAAATTGCAAATCTTGAAATTAAGAAGGCAAAAATGTAAAGGAGTCAAAACTATAAATCAAGTATTTGGGAAGTGAAGACTGGAAGCTAATTTGCATTAAATTCACAAACTTTTATACTCTTTCTGTATATACATTTTTTTTCTTTAAAAAACAACTATGGATCAGAATAGCCACATTTAGAACACTTTTTGTTATCAGTCAATATTTTTAGATAGTTAGAACCTGGTCCTAAGCCTAAAAGTGGGCTTGATTCTGCAGTAAATCTTTTACAACTGCCTCGACACACATAAACCTTTTTAAAAATAGACACTCCCCGAAGTCTTTTGTTCGCATGGTCACACACTGATGCTTAGATGTTCCAGTAATCTAATATGGCCACAGTAGTCTTGATGACCAAAGTCCTTTTTTTCCATCTTTAGAAAACTACATGGGAACAAACAGATCGAACAGTTTTGAAGCTACTGTGTGTGTGAATGAACACTCTTGCTTTATTCCAGAATGCTGTACATCTATTTTGGATTGTATATTGTGTTTGTGTATTTACGCTTTGATTCATAGTAACTTCTTATGGAATTGATTTGCATTGAACACAAACTGTAAATAAAAAGAAATGGCTGAAAGAGCAA

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