Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CHCHD2P9
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr13:23179174-23179784  UCSC
Strand -
Parental Sequence XM_016957520.1
Parental seq. overlap 513 bp
Parental seq. overlap (%) 52.7%
Genomic Region Intragenic (DGKH)
Retrocopy Summary CHCHD2P9, located on chr13:23179174-23179784, is a retrocopy of the parental gene CHCHD2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CHCHD2
Full Name coiled-coil-helix-coiled-coil-helix domain containing 2
Also known as -
Coordinate chr7:56356793-56361835
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CHCHD2P11
Bonobo Pan paniscus CHCHD2P10
Gorilla Gorilla gorilla CHCHD2P9
Orangutan Pongo abelii CHCHD2P11
Gibbon Nomascus leucogenys CHCHD2P1
Green monkey Chlorocebus sabaeus CHCHD2P1
Crab-eating macaque Macaca fascicularis CHCHD2P9
Rhesus Macaca mulatta CHCHD2P9
Baboon Papio anubis CHCHD2P10
Golden snub-nosed monkey Rhinopithecus roxellana CHCHD2P11
Marmoset Callithrix jacchus CHCHD2P8
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CHCHD2P9
TGGAAGTCAAAGCTGCACCTCCAGCATGGCCCCTCTGGCCAGCCAGCCACCTCCAATGAGACCTGCACCCCGGCCAGCACCAGCAGCTCAGCTGCCAGCAGTGGCCCCACCCACTGCAGTTGAGTCTCCTGCTGCTGCATCCTGGCAGCCAGGTCTGATGGTCCAGATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCCCTGCTGTGGGGCATATACTGGGTCAACTATCATGGGAATGGGGGCGCTTAAACAGAGGAAGTAATGCTGGGCTCACAAGGCCTGACATCACTTACCAGGAGCCTCTGGGAGACTAGCTGCACAGCAGCAGCAGCCTTGCTTGTATAAGACAGAACAGTTTCTGGAGTGTTCCCAGAACTAGGGTGATGTCAAGCTCAGTGAGGGTTCCAAGGAGGTGCTGAAACAGTGCAGACGTGCACATGGACTGGTCTAATCAAGAAGTTCAACTGAAGACATGGAAAATCAGCTTTCATGACCAAGTAAATTTAGCATAAAAATGTAACAGATAGTGAAGGTATAAAGTGAGAAACCAGCAGTTAAGCCTCTCCTCTGTCATTCATAGCTTCCTTGCTTCAGAATTGCAGTGGAAGA
>XM_016957520.1
TGACCGCGAAGGACGAGGCGTCCCCGTGACGTCCTGCTCTTCCAATGACCTTCAGGCCTGCGGAGACGTCGGAGAACGGAAGTTCTCTGCCTGTGTGCTGGTTGGTTGCGCGTTGAGGCCAGCCCCGCCTCCCATCTTCCGGTCTCCTCAGAAGTCGCTTAGATTTTCAGTGGTTGTCACACGTCCGGAGGCCTAGCCGTCGCGTATCTAGGATGCCGCGTGGAAGCCGAAGCCGCACCTCCCGCATGGCCCCTCCGGCCAGCCGGGCCCCTCAGATGAGAGCTGCACCCAGGCCAGCACCAGTCGCTCAGCCACCAGCAGCGGCACCCCCATCTGCAGTTGGCTCTTCTGCTGCTGCGCCCCGGCAGCCAGGTCTGATGGCCCAGATGGCAACCACTGCAGCTGGCGTGGCTGTGGGCTCTGCTGTGGGGCACACACTGGGTCACGCCATTACTGGGGGCTTCAGTGGAGGAAGTAATGCTGAGCCTGCGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCCAGCACAGCAGCAGCAGCCTTGCCTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCTGTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACGGTAGGATTGGCCTAATGAAGAAGTTCAACCTGGAGAGATGGAAAATCAGCTCTCATAACTAAGTTAATTTAGTATAAAAATAGAATTGATAGTGAGGGTATAAAGTATAACCATCAGTTAAACCTCTCCTGTCATTCCTAGCTTCCTTGCTTCAGAATTGAAATGGAAGTGGGGGTGTCCCTACTCTGTAGAATCTGGGACTGGGCAAATGTTTGTGTGGCCTCCTTAAACTAGCTGTTATGTTATGATTTTATTCTTTGTGAGTTAATTAGAATAAAGTAATTTTCTTCTAAGGTA

Publications

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