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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name COX6CP3
Plot displaying the genomic locations of a retrocopy (in chr2B) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr2B:86454098-86454310  UCSC
Strand +
Parental Sequence XM_009455712.2
Parental seq. overlap 184 bp
Parental seq. overlap (%) 32.8%
Genomic Region Intergenic
Retrocopy Summary COX6CP3, located on chr2B:86454098-86454310, is a retrocopy of the parental gene COX6C. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name COX6C
Full Name cytochrome c oxidase subunit 6C
Also known as -
Coordinate chr8:97813552-97829452
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens COX6CP21
Bonobo Pan paniscus LOC100994763P3
Gorilla Gorilla gorilla LOC101144243P4
Orangutan Pongo abelii COX6CP4
Gibbon Nomascus leucogenys LOC100588890P22
Baboon Papio anubis LOC101013819P8
Golden snub-nosed monkey Rhinopithecus roxellana LOC104679876P21
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>COX6CP3
TGCAGATTTCTACAAAAATTATGATTCCATGAAAGATTTTAAGGAGATAAGGAAGGCTGGTATCTTTTATAATACAAAATAATTCTGGAATATGAAGAATTTCTTTGAGTTAAATTGCCTAGAAGTTTGTCACTGACTTGTGTTCCTGAACTATGAAACATGACTATGTGGGCTAAGAAATAATTTCTCTCTTGACAAACAAACAATTAACAA
>XM_009455712.2
TGCGGTTTGTCACAACGGCACCCTCCCGCTTTCTCTCTGCCTCGGATTTAGTCGTGACTGTGTGTCTCCGCCGTGGAGCAGCTTCAGGCCTCTCCCGCATCTACCCTCTCACGCTTCCGCTGCGGCCTGAGGGAGGGCGGCGGGCAGACCACGGGACCGGGgttggcaTACGTATCAAGGACAGTAACTACCATGGCTCCCGAAGTTTTGCCAAAACCTCGGATGCGTGGCCTTCTGGCCAGGCGTCTGCGAAATCATATGGCTGTAGCATTCATGCTATCCCTGGGGGTTGCAGCTTTGTATAAGTTTCGTGTGGCTGATCAAAGAAAGAAGGCATACGCAGATTTCTACAGAAACTATGATGTCATGAAAGATTTTGAGGAGATGAGGAAGGCTGGTATCTTTCAGAGTGTAAAGTAATCTTGGAATATAAAGAATTTCTTCAGGTTGAATTACCTAGAAGTTTGTCACTGACTTGTGTTCCTGAACTATGACACATGAATATGTGGGCTAAGAAATAGTTCCTCTTGATAAATAAACAATTAACAAATACTTTGGA

Publications

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