Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name CYB5BP1
Plot displaying the genomic locations of a retrocopy (in chr15) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr15:25263918-25265215  UCSC
Strand +
Parental Sequence NM_001242609.1
Parental seq. overlap 988 bp
Parental seq. overlap (%) 22.5%
Genomic Region Intergenic
Retrocopy Summary CYB5BP1, located on chr15:25263918-25265215, is a retrocopy of the parental gene CYB5B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CYB5B
Full Name cytochrome b5 type B
Also known as -
Coordinate chr16:54558834-54600723
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CYB5BP1
Bonobo Pan paniscus LOC100977441P1
Gorilla Gorilla gorilla LOC101149484P1
Orangutan Pongo abelii CYB5BP1
Gibbon Nomascus leucogenys LOC100602615P1
Green monkey Chlorocebus sabaeus LOC103233210P1
Crab-eating macaque Macaca fascicularis LOC102119972P1
Rhesus Macaca mulatta CYB5BP1
Baboon Papio anubis LOC101009425P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104655878P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CYB5BP1
CCTCAAGGAAGGTAGTCTTGGAAGCCCAGTTAGCAGTAGAGAGGCAGTATTTCCAGTCCAATGGCAACTGTGCAAGCTAGCAGCAGTGATGAAAAAGGGCAGGGGGTAGGGACTTCCACCACCTATTAGCAGTTGGAGGAGGTGGTGAAGCAAAACTTCCTGAAGGAACTGTGTCTAGTAATCCATGGGCGACTCTACGATGTTCCCCACTTTGAGGATCCCCCTGGCAGAGAAAAGGTTCTGCTGGAACAAGCTGGTGCAGATGCAACTGAAAGTTTTGTAGATGTAGGCCACTCCTCTGATGCCAGAGAAATGCTAAAGCAGTACTATATTGGTGCTGTCCATTTGAGTGACCTCAAACCTGAAAATTGTGCAAGGATTCTTCAAAAAATGACACATGCAAAAGTTTCTGGCCATATTGGATTTTCCCTATCATAGGTGCTATCCTCTTAGGTTACCTGTCTCACTCCTACATATTGGAAAGCAAATCCTCCTGATGGACCTTGTTGAAGTCCGGAAAGCATATCTACTTTGGAATGAAAACTAGAGACTTGCTCGGGAGCTGCAGAAATGCCCTCTTCTCAAATCCTGCCAGTTGTATTCTCCCCCCTTTGGAGCCAAGACAGTTGGCCAGACAACCACCTCAGATCTGGGACCACTATCCATCTTTCAGATTATTGCTCCCAAAGTACCTGCTCACTGTTCTTTGTCAAACAATTGCCGGTGTTTCTTTTCTTCACTGGTTTCCATGAGTACCCTTTTATTTCAAAATTTTCTGTTCATAATTGTAGTTCATATGTTATAGTGACATTGCTCTTTGTCAAAAATGCCTGCTTTCCAATACTTTTAAATGCACATTAGACATTCTTAACAGGGCAACAATCTAATGCTGAACCTTTTCCTTTTCCATGTTTCTTTCAAGTAAAATCTTTTTAAAAATTCTGATTTAGaTATTTTTTAAAATCTTATTTAATTTTGTTATTATAAGGAGTTTAATTTATGGAGTAAAAGTATGTACCTATTACTTAAAACTGCCAGATGATTTTTGTTCCTTGTATGTGTGTGGTAAAACTATAAAGAACTGTGCGGTCATTTCCTCCCTCTCGAGCTAGGGTAGAAGGCAGCTCTTCACACCTCAAGTCCGGCCCCTTCCCAAGTGGCACTGGACAAAAAAACTACAT
>NM_001242609.1
GAAAAGAAAACGAACCAGGAACTATTCGGAAGTGTGATTGGCTGTTGCTAGGAACCGTCTCAAGGCCTTATGGGCCCTGGTTACGGAAGCCGAGGAAGGCTGAGCGCGGGCTCTCAAGGAAAGTAGTCGCGGAATCTCAGTTAGCGGTGGAGAGGCAGTATGTCCGGTTCAATGGCGACTGCGGAAGCTAGCGGCAGCGATGGGAAAGGGCAGGAAGTCGAGACCTCAGTCACCTATTACCGGTTGGAGGAGGTGGCAAAGCGCAACTCCTTGAAGGAACTGTGGCTTGTGATCCATGGGCGAGTCTACGATGTCACCCGCTTCCTCAACGAGCACCCTGGAGGAGAAGAGGTTCTGCTGGAACAAGCCGGTGTAGATGCAAGTGAAAGCTTTGAAGATGTAGGACACTCTTCTGATGCCAGAGAAATGCTAAAGCAGTACTATATTGGTGATATCCATCCGAGTGACCTTAAACCTGAAAGTGGTAGCAAGGACCCTTCAAAAAATGATACATGCAAAAGTTGCTGGGCATATTGGATTTTACCCATCATAGGCGCTGTTCTCTTAGGTTTCCTGTACCGCTACTACACATCGGAAAGCAAATCCTCCTGAGGAGGCCTTGCTGAAGTTAGAAAGTGCATCCACTTTGGGGTGAAAACTAGAGACTTGCTTGGGGGCTGCAGAAGTGCCCTCTCCTCGAATCCTGCCAGTTGCATTCTTCCCCCTTGGAGCCAAGACGATTGGCCAGACATCACCTCAGATCTGAGACCAGCGTCTTCCATCTCTCAGAGCCTTACTCCCAAAGTACCTGCTCACTGTTCTGTGTTGAACAATTGCCGGTGTTTCCTCTCTTCACTGGTTTCCATGAGTACCCTTATATTTCACAACTTTCTATTCATAAGTTATAGTGACATTGCTCTTTGGTAAAAATGCCTGCTTTCCAATACTTTGATTGCATATTAGACATTCTTAACAGGGCGGCAGTCTAGTGTTGAAAGTTTTATTTTTCCATTTTTCTTTTAAGTAAATTTTTTTTAAAAAATTCTGATTTAGggctaggtgtggtggctcaggcctgtaatcctggcactttgggaggccaaggtgggaagatcacttgaggccaagagttcaagaccagcctgggcaacatagcgagacccctatctgtattaaaaaaaaaaCTGATTTAATTCTTTTATTTATCATAAGGGGTTTAATTCCTGAAGTAAACTTTTGCACCTATTAAACTTAAAACTGCCAAATGATTTTTGTTCTTTTATGTGCGTGATAAAAATACAAAGAATGGTGTGGCCACCTCCTCCCTTTCAAGCTAGGGCAGCAGGTAGCTCTTCCCACCCCCTGAGCCCAGCCCCTTCCCAAGTGGTGCCGGACAAAAAACTACATGGCCCTTTCGTGTCTTGGGGGTGGAAAGGGAGGGATGAATTGGGGTGATAGAACCCTGGTGAATTCAGAGTAATCTTTCTTTAGAAAACTGGTGTTTTCTAAAGAAACAGGATAGGAGTTTAGAGAAGGCACCAAAGCTTTCACTTTGGTTTGGCACCAGTTTCTAACCATCTGTTTTTTCTACCCTAGCTATCTTTTATTGGTAAAATATAAATGTATAATTATGTTTGTAGAGCTTTACCAAGGATTTTCCCTCCTTTTTTGTTTGTTGATTAGCAAATTTTTGATTCTCCATTTTCCAAAAGTAAGAGACTCCAGCATGGCCTTCTGTTTGCCCCGCAGTAAAGTAACTTCCATATAAAATGGTATTTGAAAGTGAGAGTTCATGACAAGAGACCGTTTTCCATTTCATCTGTATTTTACCTCCGTGGCTTCAACTTGTGGGTTTGTTCTGTTTTTCCATGAGAATAAAATACTGGCAGTTTTTTTCTCAGATGTGTGTTCATTGAGAAGTAGGTTACTAGAATTATGTTACTGTGTCTTATTGGTTCAGTGATGATTTCTCTGGCATATTAGACTTTTATTTTTTCCCCCATGGAAGCACTTGAGGAAATAAATAGTACACTGGCTGTTTTCTGCCAGCAACTGTGGTGATTTTTCTCCCTGTCCTTTGAGAATTGCTAGTCTGCTTCTGAGCCATTGTCATATCCAGCAGGGAGCAGCTTGGTTCAAGAAGGACCATAGAGGCTGCTCAGCATCTCCTCCCTCCCTCCCAGCTTGCCAGGGATTTGATGAGACAGGAAACTGCCCAGCAAACCAGGGACTGCCCATGTAAACTATTTAAGAAAAAGTTCAACCCAGGTCTTGTATCCTGTGATTTAGCAGTTGAATGAATACAGAATTCATCAAAATAATATTAACCTTGTACTTGCACACTTGGATATATTTGGGAGTAATTTTAGGAGATTTCTGGCTGACTTTTATTATCAGGGATATGGGTTTAGTAAAGCTTTTATCTTTAGAAAAATGTATGCATTATAAGATGCTACTTTTAAGACAATATTGAAAAAAACTTTGGTTATTATTTAACAAAAGTGGTATGACTTGATGCTTCTCTATTTAAAGGCAAGGAAGGATTGGTATATGATTGCCTGTAATAAATAAATTGCGTGATTATTGGAGTACATTGGGGTAAAAGTAAAGAACAGAGGAGTATTGAGGAGCTTGAAAGGGAACATTCAAACTAAAGCCAAGCCTGAAGATAACTTGAATCAGTTGTAAAAGTGTGTTGGCAATGTCCGAAATTGAATGAAAAACACCTGGCTTATAAGAAATGTTAAAGAACTACCATCTTAAGTAAAATTGGTGTTTTTGTTATTTTTAAGGTAAATGCCAATGCAAAAGGTATGTTTTTCTACTTCACATTGGTTTTCTTTTCCTGTTTACATCTGCACTTGTTTTTTGCTGAGAGCCAGAGGAAAAGATAATTAGACTTTGTCTCTTCTACCCATGAAATCCCCCAGTACCCAGGGCTTCTTCTGAACTACTGCCGATATGATGTCACTTTGTATCTGGAAAATCACTTTGGGGTCCATTTACTGTTATTTTGTTGCCTACAAAAACAGCCAGGAGAAAGCTAAATCTTGTGTGAGAGTTTGCAGAGGTTTTTCTATACAATAAAGTAGTATAGCACACTAGCCAAATCCATCCAAAAGGACCTTTTTTTTTAGGAAGTAGACTTGAATTCACAAAACAGTCTTGACATGGGTAGGTGGTGAAAAACCCTCTGGAGAGCAAGTGGAGCCAGTCCCCATTGGCTGACAGTGCCACCTGGAGCTGGTCTCTGGGGTGTTCGGTTGTTTATTCCTGAGGAAGACTAgctgctgctgctgctgctgctgcAAACTGTACTGTACACATCATGGCTGCTGGACACGAAGGAGGAGGTGAGAGAAGTTTCATGCTACCGAAATAGAGGGTGTTGGTACCACTGCCCCTGGCCTGAGAGCCAGGGTTTAAACCTGCCTCAGTAGAGTCTAGTTTGAAATGACACCAAAATTCCTCAGCCCCTACTCAGCAATTGGTTTTGGTTTCCAAATGACTTCTGCATTTGTAAAGATAACAGAGTGGTGGGGTCAAAGTTTATCTTGTGTTTAGATCTCCTCAAGACTGCTTAAGCAAAAACAAAAATCCCTTGGAACCTATCCTTTGAGCCTGTAAAGTTGTTTTAGCAGTTGTCATAAATGCATATGTTGTGAAATCAGAACACTGTCGAGTTTATACTCATTTAGCTGCAATGTGGGACAATGAAAAATGCTTTACAGGCCTGGAGTATCATTACTTATGGTATCTCCTGCTTTAAAATCTCAAGCGATATCTATCTGGTTAAATTCCATTTTAGGAGATTGAGATGCAGAACGTTAATGTTCATTACCTCCTCCTACCCCAAGAGAAATGGATTCAGACATGTCTTGTCTCAACAAGAAATTGATTTTTTTTTTTTTTAACTATCTCATTCTGTTGCCAAATATCACAGAAGTAATGAGGAGTTTAGTTACATTTGGCTGTTGTGCTCTGAAAGAGCCAGGTTTGGAATTTGTGGGGGTGATCTAGGAAGAAGGTTCCAAAGAAGCAGAGGCATTTGTCAAGTTACCTACCCTATATCCAGCATCCTCCTCATGAGCTTCAGTAGCTGCTCTTTGCCCACGCTTGTATCCTACGTTTGCTATTTGGGCAAACCATTACTTCAGTTATTTAACTTCCCTTTTTTTTTAACTTCACCTTTGACTATGAACAAGTAACAGTAACATTCCTTTTGTGTATTCAATAATGCAGTTAGTTTACCTTTTTCAGAATATTTTGAACAAAGATCTTTGTCTCTTTCTGCTGGAATGCGCACACAGTGAACGTTTGTTAGAACTACACACAATAAAGACACTGTTTTCCTTTTCTTG

Publications

PMID - Link Title