Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ELOCP12
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr12:64863174-64863938  UCSC
Strand +
Parental Sequence XM_016958899.2
Parental seq. overlap 438 bp
Parental seq. overlap (%) 62.1%
Genomic Region Intragenic (PYROXD1)
Retrocopy Summary ELOCP12, located on chr12:64863174-64863938, is a retrocopy of the parental gene ELOC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ELOC
Full Name N/A
Also known as TCEB1
Coordinate chr8:72057930-72083831
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ELOCP31
Bonobo Pan paniscus ELOCP12
Gorilla Gorilla gorilla ELOCP11
Orangutan Pongo abelii ELOCP11
Gibbon Nomascus leucogenys ELOCP12
Crab-eating macaque Macaca fascicularis LOC102121831P2
Rhesus Macaca mulatta LOC100428355P2
Baboon Papio anubis ELOCP4
Golden snub-nosed monkey Rhinopithecus roxellana ELOCP4
Marmoset Callithrix jacchus ELOCP11
Green monkey Chlorocebus sabaeus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ELOCP12
TCTCCAGACGGAAGTGAGCCACACACTCTGCGTCCTCGCCTCACTAGGAAACTACTGAAGTTCCTGGGGAAGCACAGTAGCATTTCATAAGAACAAAATGGATGGGGAAGAGAAAACCTATGGTGGCTGTGAAGGCCCTGATGCCAGGTATGTGAAATTGATATCATCTGATGGCCATGAATTTACTGTAAAAAGAGAACATGCATTAACATCAGACATGATAAAAGCCATGTTGAGTGGCCCAGCTCAGTTTGCTGAGAATGAAACCAATGAGGTCAATTTTAGAGAGATACCTTCACATGTGCTATCAAAAGTACGCATGTGcTGTATGCATGTATTTTACATACAAAGTTCGCTACACTAACAGCTCCACTGAGTTCCTGAATTCCCAACTGCACCTGAAATAGCACTAGAACTGCTGATGGCTGCCAACTTCCTAGATTGTTAAATAAAAGAAATTATAATAAACTGTTAA
>XM_016958899.2
AGAGTAGGGCGCTACGCACTACCTCCAGACGGAAGTGAGCGACACACTCTGCGTCCTCGCCTCACCAGGAAACTACTAAAGTTCCTGGGGAAGCAAAGTAGAATTTCATAAGAACAAAATGGATGGAGAGGAGAAAACCTATGGTGGCTGTGAAGGCCCTGATGCCATGTATGTCAAATTGATATCATCTGATGGCCATGAATTTATTGTAAAAAGAGAACATGCATTAACATCAGGCACGATAAAAGCCATGTTGAGTGGCCCAGGTCAGTTTGCTGAGAACGAAACCAATGAGGTCAATTTTAGAGAGATACCTTCACATGTGCTATCGAAAGTATGCATGTATTTTACGTACAAGGTTCGCTACACTAACAGCTCCACCGAGATTCCTGAATTCCCAATTGCACCTGAAATTGCACTGGAACTGCTGATGGCTGCGAACTTCCTAGATTGTTAAATAAAATAAATTATAATAAACTGTTAACTCTTTTCAGTATTTAATACCTGTAGTTCAGTTAGTAACTTTTTCATATATAGCATGTTGCCTGTATGCAGTTGAACTATATAAAGTTCATTGCAAAGCAGATTATCTTGTTTTTTTGCATAGCAATCAAAGTTGAAATTTGTTTGCTACATCAACAAATTAAGGGCATTTTCACAAACTGAGAAATAAACAAATATGCCAATTCGTA

Publications

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