Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FABP12P1
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr6:146690086-146690306  UCSC
Strand -
Parental Sequence XM_016959600.1
Parental seq. overlap 189 bp
Parental seq. overlap (%) 27.5%
Genomic Region Intergenic
Retrocopy Summary FABP12P1, located on chr6:146690086-146690306, is a retrocopy of the parental gene FABP12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FABP12
Full Name fatty acid binding protein 12
Also known as -
Coordinate chr8:79628874-79637789
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FABP12P1
Bonobo Pan paniscus FABP12P1
Gorilla Gorilla gorilla FABP12P1
Orangutan Pongo abelii FABP12P1
Gibbon Nomascus leucogenys FABP12P1
Crab-eating macaque Macaca fascicularis FABP12P1
Rhesus Macaca mulatta FABP12P1
Baboon Papio anubis FABP12P1
Golden snub-nosed monkey Rhinopithecus roxellana FABP12P1
Mouse lemur Microcebus murinus FABP12P1
Dog Canis familiaris FABP12P1
Panda Ailuropoda melanoleuca FABP12P1
Green monkey Chlorocebus sabaeus Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FABP12P1
ATAGGGAGAGCCAGCAGGAAACTGGGCTGCCTGGCAAAACCCATGGTGACCATCGGTAGAAATGGAGATGTGATCACTATAAAAATGAAAAGCATCTTTAAAAATAATGAGATTGCTTTTAAACCTAGAAAAGTGTGAGGAAACCACACCAGGTGGCCATAAAATCAAGAGTACCATAACCTTAGATAATGACCCCCTGATTCAGGTTCAGGACTGGGATC
>XM_016959600.1
cccacagagtcatcaagtcaggtatgtccagcagaagtccatcatgagatcagattgtgcatctggggtcaagcctaaacaagaccagaagtcctaagAATTGTATTAAAAATAAATTCCCATACTACTTCAGGGAAAACCAGCATACACATGAAACTACTGTTCTCTGAGATCAACTTATCTCAGACAGAATGATTGACCAGCTCCAAGGAACATGGAAGTCCATTTCTTGTGAAAATTTCGAAGAATACATGAAGGAGCTGGGTATAGGAAGAGCCAGCAGGAAACTGGGCCGTTTGGCAAAACCCACTGTGACCATCAGTACAGATGGAGATGTCATCACAATAAAAACCAAAAGCATCTTTAAAAATAATGAGATCTCCTTTAAGCTGGGAGAAGAGTTTGAGGAAATCACGCCAGGTGGCCACAAAACAAAGAGTAAAGTAACCTTAGATAAGGAGTCCCTGATTCAAGTTCAGGACTGGGATGGCAAAGAAACCACCATAACGAGAAAGCTGGTGGATGGGAAAATGGTGGTGGAAAGTACTGTGAACAGTGTTATCTGTACACGAACATACGAGAAAGTATCATCAAACTCAGTCTCAAACTCTTAAGGCTTTCTCAAGCTGTCCTCCAAACTACTGAGGTTGTTTAAATAAAACTCCAAAGTAAAATATTACGACTA

Publications

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