Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FBXW11P1
Plot displaying the genomic locations of a retrocopy (in chr21) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr21:18197883-18199936  UCSC
Strand -
Parental Sequence XM_009450125.3
Parental seq. overlap 1935 bp
Parental seq. overlap (%) 43.4%
Genomic Region Intergenic
Retrocopy Summary FBXW11P1, located on chr21:18197883-18199936, is a retrocopy of the parental gene FBXW11. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FBXW11
Full Name F-box and WD repeat domain containing 11
Also known as -
Coordinate chr5:150004933-150151217
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus FBXW11P1
Gorilla Gorilla gorilla FBXW11P1
Orangutan Pongo abelii FBXW11P1
Gibbon Nomascus leucogenys FBXW11P1
Green monkey Chlorocebus sabaeus FBXW11P1
Crab-eating macaque Macaca fascicularis FBXW11P1
Rhesus Macaca mulatta FBXW11P1
Baboon Papio anubis FBXW11P1
Golden snub-nosed monkey Rhinopithecus roxellana FBXW11P1
Pale spear-nosed bat Phyllostomus discolor FBXW11P1
Human Homo sapiens Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FBXW11P1
AACACTTCAGTTCTGGAAGATCAAGATGAAGATAAGTCCCCAAAGAAAAATACTCCTTGGCAGATAAGTAATGGAACATCATTTGTGATCATCTCCAGAAAGAGGCCGTCAGAAGGAAACTATCAAAAAGAAAAAGACTTGTGTATTCAATATTTTAACCAGGGGTCTGAATCAGATCAGTTGGAATTTGTGGAACATCTTATTTCACGAATGTGTCATTATCAGCATGGACGTATCAACTCTTACCTGAAGCCCATGTTGCAGCAGGACTTTATTACTGCTTTACCCGAGCAAGGCTTAGATCACATAGCAGAAAACATTCTTTTGTACCTGGATGCCAGGTCTCTGTGTGCAGCAGAGCTGGTATGTAAAGGATAGCAAGGAGTGAATTGAACAAATGGTACACACTGATCCCCTATGGAAAGGACTTTCAGAAAGAAGAGGGTGGGATCAGTACCTGTTTCAAAACAGACCCACATCTAGCCCTCCAAATTCATTTTATAGGTCGTTATACCCAAACATTATCCAGGATATGGAGACTATAGAATCCACCTAGCGGTGTGGCCGACACAGCTTGCAGAGGATTCAGTACCACTCTGAAAATAGTAAAGGTGTCTATGGTTTACAGTACAATGATGAAAAAATTATCAGTGGCCTACAAGATAATTATATTAAGATTTGGGATAAAACCAGCCTGGAATGTTTGAAAGTGTTAATGGCCACACAGGCTCTGTCCTCTGTCTGCAGTAGGATGAGCGTGTCATTGTAACTGGCTCTTCGGATTCTACGGTGAGAGTGTGGGAAGTGAACACGGGTGAAGTTCTTAACACATTAATCCACCACAATGAGGATGTACTGCACTTATGCTTCAGCAGTGGACTGATGGTGACCTGTTCCAAGGACCACTCCATTGTTGTGTGGGACATGGCTTCTGCGACCGATATCACTTTATGCGGTGTCCTGGTTGGCCACTGAGCTGCTGTCAACGTAGTAGACTTTGACGAGAAATACATCGTGTCTGCCTCTGGTGACAGGACCATCAAAGTCTGGAGCATGAGCACCTGTGAATTTGCTCATACTCTCAATGGGCACAAGCGAGTCTTGTCTCCAGTACAGGGATGGGCTGGTTGTTAGTGGATCATCAGATCATACCATTAGGCTCTTGGATATTGAATGTGGCTCCTGTTTAAGAGTCCTAGAGGGACATGAAGAATTGGTCCGATGCATCCAGTTTGATAACAAGAGGATGGTCAGTGGGGCCTATGATGGGAAAATTAAAGTTTAGGACTTGCAAGCCGCTCTTGACCCTCGAGCCCCAGCAAGCACATTGTGTTTGCGCACATTGGTGGAACATTCTGGACATGTGTTTTGCCTACAGTTTGATGAGTTTCAAATCGTCAGCAGCTGCCATGATGACACTATTTTGATTTAGGATTTCTTAAATGTGCCTCCCAGTGCCCAGAATGAGACCCATTCCCCCTCCAGAACATACACTTACATCTCTAGATAGCAGTCTGCACTTTCACCTGTTTCCGGGTTTTCTAGTCTTGAACTACTGGCTACATGGCTACCAATGCCTAAGGGAGTTCGTTCACAGCTGAGTTATGAAGCTGGAATTGGTTCTAGACGCTGGGTAGATGCAAAGCAGCCTAACTCTTCAAGTCCCGACATTTCTCACCTCTGATTCCGGCTCTACTTTGAGAAGGAGACCTTAGCTTCACTGACTTGAAAGTAGCACAGAAGCCCATTTCCTTCCCTCATCAGTGAAAAAATCTAATGTTTCAAATGTAAACTGATCATAGAAAAGGAACATAGAATCTGTTTTACAGAAGTAAATTGACTGCCAAGAGAAGTCTTGGCCTCTAATTTATATTGCTTTGCACTTTGGTTTGATACTAAGAAACAGCATTCTTCTTCAGTGAAATTTTGGGTGCCAAACACCTACTCAGAATGTCCACGGCTTTCATTTTCAAAAGTTAACATTCTCCTTTTGACCGTCCAAGTCATTATGAATTTTGACTTGCTGTATTAGGAACATGTTGGACAATGGAAAA
>XM_009450125.3
CGGAGCTGCCGGCGGCCCGGGCGGGCTGGCAGCTAGAGTGGGTGCGATAgccgcctccgcctctgccgcctccgccgtcgcctcctccgccCGGGCCGTTCGCTGCTGCGCGGGGAGAGCGAGGCGGGGCCGCCGGGGCCGCCATGGAGCCCGACTCGGTGATTGAGGACAAGACCATCGAGCTCATGTTACCGAAGTGCATGTTTGGGATTTTGTTGAAGAAAGCTGGATACAGTAAACGGAAAGAATCTTGGAAGATGCTTGACTGCTGTCTTTTCTCAGACTAGTCTGAAAGGGAAAACCCCCATTCATTCTGGATTGGTGGATCTGAAGTACAAAATATTTTCCAGAACACTTCAGTTATGGAAGATCAAAATGAAGATGAGTCCCCAAAGAAAAATACTCTTTGGCAGATAAGTAATGGAACATCATCTGTGATCGTCTCCAGAAAGAGGCCATCAGAAGGAAACTATCAAAAAGAAAAAGACTTGTGTATTAAATATTTTGACCAGTGGTCTGAATCAGATCAAGTGGAATTTGTGGAACATCTTATTTCACGAATGTGTCATTATCAGCATGGACATATTAACTCTTACCTGAAGCCCATGTTGCAGCGGGACTTTATTACCGCTTTACCAGAGCAAGGCTTAGATCACATAGCAGAAAACATTCTTTCGTACCTGGATGCCAGGTCTCTGTGTGCAGCAGAGCTGGTATGTAAAGAATGGCAGCGAGTGATCTCAGAAGGAATGCTTTGGAAGAAGCTGATTGAACGAATGGTGCGCACTGATCCCCTATGGAAAGGACTTTCAGAAAGAAGAGGGTGGGATCAGTACCTGTTTAAAAACAGACCCACAGATGGCCCTCCAAATTCATTTTATAGGTCATTATACCCAAAGATTATCCAGGATATAGAGACTATAGAATCTAACTGGCGGTGTGGACGACACAACTTGCAGAGGATTCAGTGCCGCTCTGAAAATAGTAAAGGTGTCTACTGTTTACAGTACGATGATGAAAAAATTATCAGTGGCCTACGAGATAATTCTATTAAGATATGGGATAAAAGCAGCCTGGAATGTTTGAAAGTGTTAACAGGACACACAGGCTCTGTCCTCTGTCTGCAGTATGATGAGCGTGTCATTGTAACCGGCTCTTCAGATTCTACGGTGAGAGTGTGGGATGTGAACACGGGTGAAGTTCTTAACACATTGATCCACCACAATGAGGCTGTACTGCACTTACGCTTCAGTAATGGACTGATGGTGACCTGTTCCAAGGACCGCTCCATTGCTGTGTGGGACATGGCTTCTGCGACCGACATCACTTTACGCCGTGTCCTGGTTGGCCACCGGGCTGCCGTCAATGTAGTAGACTTTGACGACAAGTACATCGTGTCTGCCTCTGGTGACAGGACCATCAAAGTCTGGAGCACGAGCACCTGTGAATTTGTTCGTACTCTCAATGGGCACAAGCGAGGCATTGCCTGTCTCCAGTACAGGGATCGCCTGGTTGTTAGTGGATCATCAGATAATACCATTAGGCTCTGGGATATTGAATGTGGTGCCTGTTTAAGAGTCCTAGAGGGACATGAAGAATTGGTCCGATGCATCCGGTTTGATAACAAGAGGATTGTCAGTGGGGCCTATGATGGGAAAATTAAAGTTTGGGACTTGCAAGCTGCTCTTGACCCTCGAGCCCCAGCAAGCACATTGTGTTTGCGCACATTGGTGGAACATTCTGGACGTGTGTTTCGGCTCCAGTTTGATGAGTTTCAGATCATCAGCAGCTCCCATGATGACACTATTTTGATTTGGGATTTCTTAAATGTGCCTCCCAGTGCCCAGAATGAGACCCGTTCTCCCTCCAGAACATACACTTACATCTCTAGATAACAGTCTGCACTTTCACCCGTTTCAGGGTTTTCTAGTCTTGAACTACTGGCTACGTGGCTACCAAATGCCTAAGGGAGTTCGTTCACAGCTGAGTTATGAAGCTGGAATTGGTTCTAGACGCTGGGTAGATGCAAAGCAGCCTAACTCTTCAAGTACCGACATTTCTCACCTCTGATTCCGGCTCTCCTTTGAGAAGGAGACCTTAGCTTCCCCGGCTTCAAGTAGAACAGAAGCCCGTTTCCTTCCCTCATCAGTGAAAAAATCTAATGTTTCAAATGTAAATTGTTCATAGAAAAGGAACATAGAATCTGTTTTACAGAAGTAAATCGACCGTCAAGAGAAGACTTGGCCTCTAATTTATATTGCTTTGCACTTTGGTTTGATATTAAGAAACAGCATTCTTCTTCAGTGAAATTTTGGGTGCCAAACACCTACCCAGAATGTCCAGGGCTTTCATTTTCAAAAGTTAGCATTCTCCTTTTGACCGTCCAAGTCATTATGAATTCTGACTTGTTGTATTAGGAACATGTTGGACAATGGAAAGTTTTAGTAATATTTTTGGGATTATACTTCCTTTCTGTACCAATTTCTTTTAATTTAAAGAACTATAAGTCAGTTATATTATCTACCAACAGGTAATATAGCTCTTTCTTTTATTAACTGTTCTCTGTCCCCCAACCATCTCCTGATATTTGGTAGAGTAACACCTTTATACGTGTGCTTGCCTCCTAATTTAAAATACTGTATTCGCATGTAGATATAATGTACATAACAGTTTAACCTCAAAGATGCTGGAGTCAGGGCCCCCTGTGCTTGAGACACTAATACAGAGTGTGTTCGCACTTAGCCATGGACTGGGCTCAAGAACCTGATACCTGGGTTGATGTGGATTACCTAGAACCCTTCCTGCAGTATTCATACAGTGTTTTTATTTTGTTGTTGTCATtgcgtgtgtgtggtttgtgtgtgtTTTTAATGAGAATCTTGTTTTAAAATGTAATTTCTAAGGTTTAACACCAAACTGTTTTATTTGTTGTGGAGTATATATTATACAATAGAGAGGTACCTTAAACATTTTTTGTTCTTATTCTTTTTCTCATAAGTACTCCTGAGTACAAGTGGTCACCTCCCATAGTATTCATTTGGCTTCGCTGTCAAAAATCATTATTCTGTGCAGTCGTGGCCCTGGGAAGGGGAAATAAGAAGGCCCTGTTGACGGGCTGTCTTGGCTCTGGAATTCATGCATCCTGGCCTTGCCAAGGTTCTGGCAGGGCCTGCTGGTGTGTTGGAGCCTGCAGGGCAGGTCAGGCTGGTTCAGAGGCCCATGCTGAGGGGTGGGTGCTCTGAAGTGGAGTGAAGCCTCAAGCCCATGAATGCCACCCCAGTCATCTCTGGTGTCAGCTGCTGCTGTGGCCCCAGCAGGTTCTCAAAGCTCCCAAGTCCTCCCGACGACACAGCCCAAATGTGTAAATGGCACTGTTGCCCTGACAGTGCATGGAAAGGACGTTGGCATCCAATTGGCACTCCTTCTCCCTTATTCAATATTAGGTTTGATTTGCCCTTCGCCATTGTTTCCAAAGATCAAGGAATGTCAATAACATTTTAAAGGACCAATAAACAGCCTCCTATAAAGTAAACCTCTTCCCGTGGAAGCACACTCTACCACTAAAGGGAAGGCCCCTGGGCTCTGATTTGTCCTTTGCATTGAGAACGGTGTGGGGATCAATGTGTGTGTATGTGATTTGTTCATTGAGTTGGCTTTGCTTTTTTAGTTTTTCTTTTAAAAATAAAATCCTTCCTTCCCATGTTACTAAATTAATTTATGTTTTTGAGAGGTTGAGTCTCAAAGTGTAAACAATAAACCTCCATTCATAAGGTGGATGTTGTAAGCTTGATGGTGGTTGTGAAAGTGATTTAGCTTTGACCACTTTTCATCCTACAGCTTCAATATCAAACTGGTTAGGAAAGCCCAGGGGGAAGGGAGGAGGCAGGGGAGGAGGCAATTCTGAATGAATGAATGGATTTTTTGTTGTTTTTGCATGTTTAATATAGAAGTTCCCCTTGTTCCTTGGGAGATCATGGCCTTTGAATATGCACACAACCTTTGAATTGTGCCTACTAAATTATAGCAGGGGACTTTGGCACCCAAGGAGTTCTGACTTTCTGGGATTATAATAGTAATTCCCAGCCATACTCTGGACTTTATTTTGCTAACCATAATTGAGCAAATGTAAATTACTGCTATATTAATGTTTTAAAGCACTGGGATAGTCTAATTCTAACTTGTAATTAATTATGTTTGCCAATTATCTGTTTGAAATAAATTTGTGTCTGAACAGCTATTGAAACTGTTAAATTGTACAGATATTATTCATGACAGCTTTGTACTGTGGAATGTGCTTAATAAAAAACAAAAAAGTTTGACTTTTGTCCAATAAATTGGTAAGTAATGTCAATAAATCGAGTATGGGTATTATGCAGTGCACCTAATCTGGCTTCATGCAATTGTTACTTCAGCTACTGATTCAAAGCCAATACTCTTAATAAAGTGTTGCAATACTCTGA

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