Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FTLP6
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr16:53951552-53952114  UCSC
Strand +
Parental Sequence XM_009436008.3
Parental seq. overlap 478 bp
Parental seq. overlap (%) 20%
Genomic Region Intragenic (CDH1)
Retrocopy Summary FTLP6, located on chr16:53951552-53952114, is a retrocopy of the parental gene FTL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FTL
Full Name ferritin light chain
Also known as -
Coordinate chr19:46890769-46893850
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FTLP14
Bonobo Pan paniscus FTLP7
Gorilla Gorilla gorilla FTLP8
Orangutan Pongo abelii FTLP7
Gibbon Nomascus leucogenys FTLP1
Green monkey Chlorocebus sabaeus FTLP5
Crab-eating macaque Macaca fascicularis FTLP16
Rhesus Macaca mulatta FTLP16
Golden snub-nosed monkey Rhinopithecus roxellana FTLP17
Marmoset Callithrix jacchus FTLP24
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FTLP6
CCCTCTCCACTTGCAACCAGGACCATCTTCTCTGCTACCTCCTGCTCCTGGGACCAAACAACACCATTTTTGTGGTTAGCTCCTTCTTGCCAACCAATCGTGAGCTCCCAGATTCATCAGAACTATTCTACCGAGGTGGAGGCAGCTGTCAACTGCCTGGTCAATTTGCATATATGGGCTTCCTACACCTACTTTTCTCTGGGCTTCTATTTCCACCATGACGATGTGGATCTGGAAGGTGTGCACCACTTCTTCCACAAATTGGCCAAGGGAGAAGCACAAGGGCACTGAGTGTCCCTTGAAAATGCAAAACCAGTGTGGCGGCCGCAGTGTCTTCCCGGACATCCAGAAGCCATGTAAAGATGAATGGGGTAAAACCCTGGGTGCGATGGAAGTCACTCTGGCCCTGGAGAAGAACCTGAACTGGGCCCTTTTGGATCTTCATGCCTTGGGTTCCGCCTGCACAGACCCCCATATCTGTGACTTCCTGGAGAGCCACTTCCTAGATGAAAAAGTAAAACTCATCAAGAAGATAGGTGACCACCTGACCAACCTTCACAGGC
>XM_009436008.3
GGTAGGGGGCCCGATTTGGGTCTGAGCCAGGTCTAGTTCTGAGGGTCCCACCAAAAAAGTCGGGGAGTGCCAAGGGGATGAGGTCAGCGAGTGGCCCCACCCCCATCCGTCCCCGCGGGGGCCCCTTCCCGCGCTGAGCTCAGCATGACTCAGCAGTCGCTGCCTGCAACAAGGACCCCAGATACCGGCCTGGCGGGGCATCTGCAGATCCCCTCGGTCAGGGGCTGCCCCGCCTGGGCTGTTCGAAGCAGCTCCTCTGTAGGGCAGGGCCTGACCTCACCCCACACCCCAGTGGCTTCAGCTCCCTGCCCAGCGCACGGGCTGCCTCCATCAGGGCACTTAAGTAGAGTCAAGGTTTGCGCCGACTCCGTCTCCCAGAAATCAACGTGGACCAGGCCCACTTAAAAAATATGCATTAGTCGAAGACAGACGTCTCGTCCATAGGTCCCCAGACTGTTTGTCCACAACGCAGGGCTTCTCTTTGTGGGCCTGAAAGAGCACACGTCAGGCAAGACACGAGGGCAACTTCAGAGACACTGTTCAGGGCCACGGAGAATTCTCGAAGTCTGTGAGTTGCCTCCAAAACAGCCTCCAGGAAATGCAATCCCAGAGACACCGCAAAGCTCAAAACACACTTTTCATTCCTCCCCATTTCCACTCCCAGAAAAAGCCTGGGCCCCTGAAAGAGCTCCAAGGTATCCCCAAAGTCCCAGCCCATCTTTGGAGGGTTCCAGAGGGCTGTCCAGGGTTCCAGAAGTCACCCTACCTCATACAATGCTCCCCCTGGGCTTCCCGCACTGGGTGAAACCCACGGCTCCAGAATAACTGCCCTTTCCAACTTGCAGAGCACCTCAAGAACCTAAAGATTTCCCCGGGGAGGGCTCCAAAATACAGAGAGTTTGCATCGTGAACCCCCACCTCTGTAAATCCCAGGACTCCAGTCCCCGCAACACTCCATCTTCCAGAGATCTCCAGGGGTCCAGAAATAACACCTCACAGCCTTCCAAGCTTCCCAAGGATCCGGAGACTCCTTATCTCGCAGCGCAAACCTCAGGCAACTACAGGTCCTCCCTGCACCTTTGAGGTGCCCCTCCCCCCACTCAAGGTTCCAGAAAAATCCATGCCCTCGGAAACCCCAGAATCTTACTTTCCCGAGGCACCCCCAGGACCCCAGGGTCATCAGTTCACAGGGCTGTTAGTGCTCCCATAAAACTCTAGCCTCCCAGAGGGACCCCAGCCCCCACCCTCCCGCCCACGAACCCCTGCATTTCCAGAATCAGCCCCAGGGCCCCAACCCCCCCAAGCCCCCATTTCACAACACGCTGGCGCTACAGGCGCGTGACTTCCCCTTGCTTTGGGGCGGGGGGCTGAGACTCCTATGTGCTCCGGATTGGTCAGGCACGGCCTTCGGCCCCGCCTCCTGCCACCGCAGATTGGCCGCTAGCCCTCCCCGAGCGCCCTGCCTCCGAGGGCCAGCGCACTATAAAAGAAGCCGCCCTAGCCACGTCCCCTCGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGGACTCTCTTCCAGCCTCCGACCGCCCTCCGATTTCCTCTCCACTTGCAACCTCCGGGACCATCTTCTCGGCCATCTCCTGCTTCTGGGACCTGCCAGCACCGTTTTTGTGGTTAGCTCCTTCTTGCCAACCAACCATGAGCTCCCAGATTCGTCAGAATTATTCCACCGACGTGGAGGCAGCCGTCAACAGCCTGGTCAATTTGTACCTGCAGGCCTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGATGATGTGGCTCTGGAAGGCGTGAGCCACTTCTTCCGCGAATTGGCCGAGGAGAAGCGCGAGGGCTACGAGCGTCTCCTGAAGATGCAAAACCAGCGTGGCGGCCGCGCTCTCTTCCAGGACATCAAGAAGCCAGCTGAAGATGAGTGGGGTAAAACCCCAGACGCCATGAAAGCTGCCATGGCCCTGGAGAAAAAGCTGAACCAGGCCCTTTTGGATCTTCATGCCCTGGGTTCTGCCCACACGGACCCCCATCTCTGTGACTTCCTGGAGACTCACTTCCTAGATGAGGAAGTGAAGCTTATCAAGAAGATGGGTGACCACCTGACCAACCTCCACAGGCTGGGTGGCCCGGAGGCTGGGCTGGGCGAGTATCTCTTCGAAAGGCTCACTCTCAAGCACGACTAAGCCTTCTGAGCCCAGCGACTTCTGAAGGGCCCCTTGCAAAGTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGTAGCTTTCTTAACTATCCTAACAAGCCTTGGACCAAATGGAAATAAAGCTTTTTGATGCA

Publications

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