Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GAPDHP9
Plot displaying the genomic locations of a retrocopy (in chr2A) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr2A:3680096-3681174  UCSC
Strand -
Parental Sequence XM_508955.7
Parental seq. overlap 898 bp
Parental seq. overlap (%) 64.8%
Genomic Region Intragenic (ALLC)
Retrocopy Summary GAPDHP9, located on chr2A:3680096-3681174, is a retrocopy of the parental gene GAPDH. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GAPDH
Full Name glyceraldehyde-3-phosphate dehydrogenase
Also known as GAPD
Coordinate chr12:6735763-6739722
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GAPDHP48
Bonobo Pan paniscus GAPDHP9
Gorilla Gorilla gorilla GAPDHP9
Orangutan Pongo abelii GAPDHP9
Gibbon Nomascus leucogenys GAPDHP38
Green monkey Chlorocebus sabaeus GAPDHP25
Crab-eating macaque Macaca fascicularis GAPDHP42
Rhesus Macaca mulatta GAPDHP40
Baboon Papio anubis GAPDHP42
Golden snub-nosed monkey Rhinopithecus roxellana GAPDHP53
Rat Rattus norvegicus GapdhP246
Dog Canis familiaris GAPDHP31
Cat Felis catus GAPDHP56
Sloth Choloepus didactylus GAPDHP105
Opossum Monodelphis domestica GAPDHP4
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GAPDHP9
CCTGGTCACCAAGGCTGCTTTTAGCTCTGGCAAAGTGGATATTGTCATCATCAATGATGCCTTCATTGACCTCAACTACCTGGCCTACATGTTCCAGTAGGCTTCCACCCATGACAAGTTCCACAGTATCATCAAGGCTCAGAATGAGAAGACTGACATCAATGGAAATCCCATCATTATCTTCCAGGAGCAAGATCCCCCCCAAAATCGAGTGAAATGACAGCGGTGCTGATTATGTTGTTGAGCCCACTAGAATCTCCATTACCATGGAGAAGGCTGGGGCTCACTTAGAGGGGTAAGCCAAAAGAGCCATCATCTCTGCCCCCTCTGCTGATGCCCCTTATGTTTATGTGGGGTGTGAATCATGAGAAGTATGAAAACAACCTCAAGATCCTTAGTAGTGCCTCATACACCACCTACTGCTTAGCCCTTCTGGCCAAGGTCATCCATGACAACTTTGGCACTATGGAGGGACCCATGACTACAGCCTATGCAATCACTACCACTCCGAAGATCATGGGTGCCCCTTCTTGGAAACGTTGGCAGGATGGCCACAGGGCTCTACAGAACATCATCTCTGCATCTACTTGCACTGCCAAAGCTGTTGGAAAGGTCATCCCCAAGCTGAATGGAAGCTCACTAGCATGGTGTTCCATATCCCCACCTCTGTGTCATTTTGGACCTGACTTGCCATCTGGAGAAACCTGACAAATATGACACCATCAAAAAGGTGGTGAAGCAGGCATTGGAGGGCCCCCTCAAGGGCATCCTGGGCTATAGTGAGTGCCAGGTTGTCTCCTCTGACTTTAACAGACATTCACTCTTCCAGATTTGATGCTGGGGCTGGCATTTCCCTCAATGACTACTTTGTCAAGCTTATTCCCTGGTATGACAATGAATTTGGCAACAGGGTAGTGGAGGCCTCATGGTCCACATGGCCTCCAAAGAGTAAGAGCCTCTGGACCACCAGCCCCAGCAAGAGCACAAGAGGATTAGAGAGGTTCTCAGCTGCTAGGGAGTCCCTGCCACACTCACTCTCCCACCATACTGAGAATCTCCCCCTGACACAGTTTCCATGC
>XM_508955.7
CTGGCTGAGCCTGGCGGGAGGCGGGGTCCGAGTCACCGCCTGCCGCCGCGCCCCCGGTTTCTATAAATTGAGCCCGCAGCCTCCCGCTTCGCTCTCTGCTCCTCCTGTTCGACAGTCAGCTGCATCTTCTTTTGCATTGCCAGCCGAGCCACATCGCTGAGACACCATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTAACTCTGGTAAAGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTTCCAATATGATTCCACCCATGGCAAATTCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATCAATGGAAATCCCATCACCATCTTCCAGGAGCGAGATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCATGGAGAAGGCTGGGGCTCATTTGCAGGGGGGAGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGACGCCCCCATGTTCGTCATGGGTGTGAACCATGAGAAGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTGGCCAAGGTCATCCATGACAACTTCGGTATCGTGGAAGGACTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCCGGGAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCATCCCTGCCTCTACTGGCGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACTGCCAACGTGTCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGACATCAAGAAGGTGGTGAAGCAGGCGTCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGCACCAGGTGGTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCACCTTCGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTACAGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGCCCCAGCAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGAGTCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGTTTCCATGTAGACTCCTTGAAGAGGGGAGGCGCCTAGGGAGCCGCACCTTGTCGTGTACCATCAATAAAGTACCCTGTGCTCAACCA

Publications

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