Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC112207979P14
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chrUn_NW_019935672v1). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr12:9482185-9482661  UCSC
Strand +
Parental Sequence XM_024353959.1
Parental seq. overlap 419 bp
Parental seq. overlap (%) 71%
Genomic Region Intergenic
Retrocopy Summary LOC112207979P14, located on chr12:9482185-9482661, is a retrocopy of the parental gene LOC112207979. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC112207979
Full Name N/A
Also known as -
Coordinate chrUn_NW_019935672v1:9908-13714
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus RPS17P15
Gorilla Gorilla gorilla RPS17P16
Orangutan Pongo abelii RPS17P18
Gibbon Nomascus leucogenys RPS17P24
Green monkey Chlorocebus sabaeus RPS17P6
Crab-eating macaque Macaca fascicularis RPS17P15
Rhesus Macaca mulatta RPS17P13
Baboon Papio anubis LOC101007228P13
Golden snub-nosed monkey Rhinopithecus roxellana RPS17P21
Human Homo sapiens Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC112207979P14
TTCTTTGACCAAGGACCTGCCAACATGGGGCACGTTCACACCAAAACTGTGAAGAAGGTGGCCCGGGTCATCATAGAAAAGTACTACATGTGCCTGGGTAACAATTTCCACACAAATAAGTGTGTGTGTGAGGAGACGGCCATTATCCCCAGCAAGCAGCTCCGCAATAACATAGCAGGCTGTGTCAAGCACCTGATGAAGTGGATGCAGAGGGGCCCACTGAGAGGTATTTCCATTAAGTTGCAGGAGAAGGAGAGAGAAAGGAGAGACAATTATGTTCCCGAGGTCTCAGCCCTGGATCAGGAGATCATTGAAGTAGATCCTGACACTGAGGAAATGCTGAAGCTTTTGGACTTTGGCAGTCTGTCCCACCTGCAGATCACTCAGCCTACAGCTGGGATGAATTTCAAAATGCCTCCGGGGGCTGTTTGATTCTTTCTGCAATGCTGTAATATTTTCAATAAACCTGGGACAACA
>XM_024353959.1
tccgccAGGGGGCGCTGTGTGGCTCCCGAGTAGGCTCAGAGCGACCGTGGCCGGGCGGAAGCGGCTTTCTGGCCTAAGCTTTAACAGGCTTCGCCTGTGCTTCCTGTTTCCTCTTTTACCAGGGACCCGCCAACATGGGCCGCGTTCGCACCAAAACCGTGAAGAAGGCGGCCCGGGTCATCATAGAGAAATACTACACGCGCCTGGGCAACGACTTCCACACGAACAAGCGCGTGTGCGAGGAGATCGCCATTATCCCCAGCAAAAAGCTCCGCAACAAGATAGCAGGCTATGTCACGCATCTGATGAAGCGAATTCAGAGAGGCCCAGTAAGAGGTATCTCCATCAAGCTGCAGGAGGAGGAGAGAGAAAGGAGAGACAATTATGTTCCTGAGGTCTCAGCCTTGGATCAGGAGATAATTGAAGTAGATCCTGACACTAAGGAAATGCTGAAGCTTTTGGACTTCGGCAGTCTGTCCAACCTTCAGGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACGCCTCGGGGACCTGTTTGAATTTTTTCTGTAGTGCTGTATTATTTTCAATAAATCTGGGACAACAGC

Publications

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