Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC461536P19
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr7:130640555-130641273  UCSC
Strand -
Parental Sequence XM_001153182.5
Parental seq. overlap 631 bp
Parental seq. overlap (%) 67.5%
Genomic Region Intragenic (EXOC4)
Retrocopy Summary LOC461536P19, located on chr7:130640555-130641273, is a retrocopy of the parental gene LOC461536. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC461536
Full Name N/A
Also known as RPS3A
Coordinate chr4:149140920-149145992
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS3AP27
Bonobo Pan paniscus LOC100975318P19
Gorilla Gorilla gorilla LOC101144197P16
Orangutan Pongo abelii RPS3AP18
Gibbon Nomascus leucogenys RPS3AP27
Green monkey Chlorocebus sabaeus LOC103236378P31
Crab-eating macaque Macaca fascicularis RPS3AP8
Rhesus Macaca mulatta LOC703455P8
Baboon Papio anubis LOC101003493P13
Golden snub-nosed monkey Rhinopithecus roxellana RPS3AP14
Marmoset Callithrix jacchus RPS3AP30
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC461536P19
CATTTTCTAAGACCGACTAGTGTGATGTGAAAGCAGCTATGTTCAATATAAGAAGTATTGGAAAGACACTAGTCACCAGGACTCAAGGAACCAAAATTGCATCAGATGGCCTCAAGGGTTTGCGTGTTTGAAGTGAGCCTTGCTGATCTGCAGTCAAGTTGCATTTAGAAAATTCAGGCTGATTACTGAAGACAAACAAGGTAAAAACTGCCTAACTTTCATGGCATGGATCCTACCAGTGACAAAATATGTTCCATGGTCAAAAAAATGGCAGACCATTACTGAAGTTCATGTTGATGTCAAGACTACTGATGGTTATTTGCTTCATCTGTTCTGTGTTGGTTTTACTAAAAAGTACAACAATCAGATACAAAAGACTTCTTATGCTCAGCACCAACAGGTCTGCCAAATCCAGGAGATAATGATAAAAACCATGACCCAAAAACTGCAAGACAAATGACTTGAAAGAAGTGGCCAGTAAATTGACTTCGGACAGCATTGCAAAATATATTAAAACAGCTTGCTAATCTATTTATCCTTTCCATGATGTCTTGGTTAGAAAAGTAAAAATGCTAAGCCCAAGTTTGAATTGGGAAAGGGCATGGGGCTTCATGGTGAAGGTAGTGGTTCTGGAAAAGCTACTAGAGACAAGACAGGTGCTGAAGTTGAATGAGCTGATGGGTGTGAACCACTAGTTCAGGAATCTGTTTAAAATTCAA
>XM_001153182.5
AAAGGTCACGTAGACGGCGCGCCCCGCCCCCGTACGCCTAAGTTCTCGCGCGACTCCCACTTCTGCCCTTTTGGCTCTCTGACCAGCACCATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAAGAAAGATTGGTATGATGTGAAAGCACCTGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAGGAACCAAAATTGCATCTGATGGTCTCAAGGGTCGTGTGTTTGAAGTGAGTCTTGCTGATTTGCAGAATGATGAAGTTGCATTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGTAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCGTGACAAAATGTGTTCCATGGTCAAAAAATGGCAGACAATGATTGAAGCTCACGTTGATGTCAAGACTACCGATGGTTACTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAGGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAAATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCATGATGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAAAGTTCAGACTTCAAATAGTGGCAAATAAAAAGTGCTATTTGTGATGG

Publications

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