Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NAP1L1P3
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr12:53531718-53534476  UCSC
Strand +
Parental Sequence XM_009425873.3
Parental seq. overlap 1563 bp
Parental seq. overlap (%) 41.6%
Genomic Region Intragenic (DNM1L)
Retrocopy Summary NAP1L1P3, located on chr12:53531718-53534476, is a retrocopy of the parental gene NAP1L1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NAP1L1
Full Name nucleosome assembly protein 1 like 1
Also known as -
Coordinate chr12:73597356-73636176
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NAP1L1P4
Bonobo Pan paniscus NAP1L1P3
Gorilla Gorilla gorilla NAP1L1P2
Orangutan Pongo abelii NAP1L1P3
Gibbon Nomascus leucogenys NAP1L1P5
Green monkey Chlorocebus sabaeus NAP1L1P2
Crab-eating macaque Macaca fascicularis NAP1L1P2
Rhesus Macaca mulatta NAP1L1P3
Baboon Papio anubis NAP1L1P2
Golden snub-nosed monkey Rhinopithecus roxellana NAP1L1P3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NAP1L1P3
TTTTTTTAGCGCCATCTGCTTGCAGCGCTGCCTCTTGCTCCTCCCCACCACCGCTGCTGCCCTGAGTCACTGCCTGCACAGCTCCAGCCGCCTGGCTTCTCATACTAGCCACTTGATATTTGGAGTTCTTACAACATGGCAGACGTTGACAACCTGCCTAGCTAGGGTAGTTAAAAGAGGAGTGAATGCTCTCAAAAACCTGCAAGTTAAAGGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTATGCTGTTCTCTATCAGCCTCTATTTGATAAGCAATCTGAGATTACTAATACAATTTATGAACCTACAGAGGAAGAATGTGAATGGAAACCAGATGAAGAAGATGAGATTTCAGAGGAGTTGAAAGAAAAGGCCAAGACTGAAGATGAAAAAAACGATGAAGAAAAAGAAGACCCCAAAGGAATTCCTGAATTTTGGTTACCTGTTTTTAAGAATGTTGACTTGCTCAGTGATATGCTTCAGAAACATGATGAACCTATTCTGAAGCATGTGAAAGATACTAAAGTGAAGTTCTCAGATGCTGGCCTGCCTATGAGTTTTGTCTTAGAATTTCAATTTGAACCCAGTAAATATTTTACAAATGAAGTGCTGACAAAGACATATAGGATGAGGTTAGAACCAGAACCAGATGATTCTGATCCCTTTTCCTTTGATGGACAAGAAATTATGGGTTGTACAGGGGGCAAGATAGATTGGAAAAAAGGAAAGAATGTCATTTTGAAAACCATTAAGCAGCAGCAGAAACACTAGGGACATGGGACAATTCGTATTGTGACTAAAACAGTTTCCAATGACTCTTTAATTTTCTTGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATCCTTGCTGCAGACTTCAAAATTGGTCACTTTTTACGTGAGCATACAATCCCAAGATCAGTGTTATAGTTTACTGGAGAAGCTACCCAGACTATGACCCGAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGAAGCAGGATATATGTGGCCTTGAGGATAACCTGCACTGTCCTAGCCTAAACACAACTCTTACTTACTGCCTTATGTTTTTGTATTTTCTTGGTAGACTGGGTAATTTTTGTTTTAAAGGACAGGAAACTGATATTTTAAAGACCAATCTGTTCTACCTAGCATTTTCACTAGTTTTTCTGCCAGGTATGTTGAATGCACAAATTCTGTCACACATGGTCATTCGCTGCTACATAATTTGGTTCTTCGGAATATTTTTATATAGCTCTTGCAGTACAGCTATGAAAATTAACAACTGTTAAAGGAAACACTTTTTTTTTTCCGTAATTTTTTCCTTGAAGAACCAAAGTATTTTTTCAGCTGTTTGTTGAATAGGGTTAAGTCTGCTTGGATTAGCTGTGCCTTTCATTACTTTGTTACAGAAATGCAGGGACTTGTACTAAGACAATTCATCGTTTAAAAAAAAAAAAAAAACTGGCATTTGGCAAGACAACTATATGGTTAAGAATTTAAAGAACTTCCAGTATGACCACACCCAATAACTGTATTAGATTGTTAATGGATTATTGTGTTATAGGTGACATAGTTAACTGTAAAGTAACGTGACTCAGTATAGTTACTGGTACCACAGTGAGGTGAATAAAACAGGATTTTTCAGAAGTTAGCCTGAATTTCACTGTACTTTTAAATTTAACCTCCATTAACTAAGCATCTTTTCTTTGTGGTAGGGTCTACCTTCTGCTTCCCTGGAAAGGATGAACTTACATCATTTGACAAGACCTGTTTTCAAGtTTGTAGCCTAAAATAAAAATTTCAAATACAATTTTAGTTCTTACAAGATGTCTTAATTTTGTACCAATTCAGGTAGAAGCAGAGGCCTAGCTTGAATTAAGGGTTATACTCAGTTTTTACCACATTATTGAAAAGGGTACCAGCTTTGGAAAGAGATACTATACTAATAAGCAAGTGTAAAAAAAAAGAAGAAAATCTTCAGTGATACGATGCTTTAAAAAAAAAAAATTACAGTTCATTTTCTTTGGGGTAGAGCTAGAGAGAAGGCCCCAAGCTTCTGTGGTTTCTTCTAATTCTTATTGCTTGAAGTATGAGCATGTCACTTACCCATGCTTCTGTTTACTATGTATTAAAATGTGTAGTACTGTTTACTTAACTACCTCATGGATGTGTTAAGGCATATTCAGTTAAATCTCATAAAATGTTTCTCATTCTCATTAAAAGCTCAAATTTTGGGCCTATTTGTAATGCCAGTGTTGACACTCAGCATTTTGTTCACACCATGCTTTGACAACTAAACTGGAAAACA
>XM_009425873.3
gccggggacgcgggcCAGGCCTTCCCCACAACTGATGGGGTTGAAATTTCCTTTCCGGCTCAGCAGGGAGAAAAGATATGGTGGGGTGCTTAACAGAGGAGGTTAGACACCGGCGGGAACCAGAGGAGCCCAAGCGCGGCGTCTGGGCCTCGGGGCTGCAGGAGTCCTCGGTGGGGGTATGGAGGTCGCCGGGGAAGGAGGACGGTTCAGTTGCTAGGCAACCCGGCCTGGACCCGCCTCTCGCTCGCGTTGCTGGGAGACTACAAGGCCGGGAGGAGGGCGGCGAAAGGGCCCTACGTGCTGACGCTAATTGTATATGAGCGCGAGCGGCGGGCTCTTGGGTCTTTTTTAGCGCCATctgctcgcggcgccgcctcctgctcctcccgctgccgctgccgcCCTGAGTCACTGCCTGCGCAGCTCCGGCCGCCTGGCTCCCCATACTAGTCGCCGATATTTGGAGTTCTTACAACATGGCAGACATTGACAACCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCTCTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCATGATCTTGAAAGGAAGTATGCTGTTCTCTATCAGCCTCTATTTGATAAGCGATTTGAAATTATTAATGCAATTTATGAACCTACGGAAGAAGAATGTGAATGGAAACCAGATGAAGAAGATGAGATTTCGGAGGAATTGAAAGAAAAGGCCAAGATTGAAGATGAGAAAAAGGATGAAGAAAAAGAAGACCCCAAAGGAATTCCTGAATTTTGGTTAACTGTTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGAACACGATGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTCTCAGATGCTGGCCAGCCTATGAGTTTTGTCTTAGAATTTCACTTTGAACCCAATGAATATTTTACAAATGAAGTGCTGACAAAGACATACAGGATGAGGTCAGAACCAGATGATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGCCAGATAGATTGGAAAAAAGGAAAGAATGTCACTTTGAAAACTATTAAGAAGAAGCAGAAACACAAGGGACGTGGGACAGTTCGTACTGTGACTAAAACAGTTTCCAATGACTCTTTCTTTAACTTTTTTGCCCCTCCTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATCCTTGCTGCAGACTTCGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTACTGGAGAAGCTATtgaagatgatgatgatgatTATGATGAAGAAGGTGAAGAAGCGGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATGATCCAGACTATGACCCAAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGAAGCAGGATGTATGTGGCCTTGAGGATAACCTGCACTGGTCTACCTTCTGCTTCCCTGGAAAGGATGAATTTACATCATTTGACAAGCCTATTTTCAAGttatttgttgtttgtttgcttgtttttgtttttgCAGCTAAAATAAAAATTTCAAATACAATTTTAGTTCTTATAAGATAATGTCTTAATTTTGTACCAATTCAGGTAGAAGTAGAGGCCTACCTTGAATTAAGGGTTATACTCAGTTTTTACCACATTGTTGAAGAAAAGGTACCAGCTTTGGAACGAGATGCTATACTAATAAGCAAGTGTaaaaaaaaaaaaaaaaagaggaagaaaaTCTTAAGTGATTGATGCTGTTTTCTTTTAAAAAAAAAAAATTAAAGTTCATTTTCTTTGGGTTAGAGCTAGAGAGAAGGCCCCAAGCTTCTGTGGTTTCTTCTAATTCTTATTGCTTAAAGTATGAGTATGTCACTTACCCGTGCTTCTGTTTACTGTGTAATTAAATGGGTAGTACTGTTTACCTAACTACCTCATGGATGTGTTAAGGCATATTGAGTTAAATCTCATATAATGTTTCTCAATCTTGTTAAAAGCTCAAAATTTTGGGCCTATTTGTAATGCCAGTGTGACACTAAGCATTTTGTTCACGCCACGCTTTGATAACTAAACTGGAAAACAAAGGTGTTAAGTACCTCTGTTCTGGATCTGGGCAGTCAGCACTCTTTTTAGATCTTTGTGTGGCTCCTATTTTTATAGAAGTGGAGGGATGCACTATTTCACAAGGTCCAAGATTTGTTTTCAGATATTTTTGATGACTGTATTGTAAATACTACAGGGATAGCACTATAGTATTGTAGTCATGAGACTTAAAGTGGAAATAAGACTATTTTTGACAAAAGATGCCATTAAATTTCAGACTGTAGAGCCACATTTACAATACCTCAGGCTAATTACTGTTAATTTTGGGGTTGAACTTTTTTTTTGACGACAGTGAGGGTGGATTATTGGATTATCATTAGAGGAAGGTCTAGATTTCCTGCTCTTAATAAAATTACATTGAATTGATTTTTAGAGGTAATGAAAACTTCCTTTCTGAGAAGTTAGTGTTAAGGTCTTGGAATGTGAACACATTGTTTGTAGTGCTATCCATTCCTCTCCTGAGATTTTAACTTACTACTGGAAATCCTTAACCAATTATAATAGCTTTTTTTCTTTATTTTCAAAATGATTTCCTTTGCTTTGATTAGACACTATGTGCTTTTTTTTTTAACCATAGTTCATCGAAATGCAGCTTTTTCTGAACTTCAAAGATAGAATCCCATTTTTAATGAACTGAAGTAGCAAAATCATCTTTTTCATTCTTTAGGAAATAGCTATTGCCAAAGTGAAGGTGTAGTTAATACCTAGTCTTGTTACATAAAGGGGATGTGGTTTGCAGAAGAATTTTCTTTATAAAATTGAAGTTTTAAGGGACGTCAGTGTTTATGCCATTTTTCCAGTTCCAAAATGATTCCATTCCATTCTAGAAATTTGAAGTATGTAACCTGAAATCCTTAATAAAATTTGGATTTAATTTTATAAAATGTA

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