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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NDUFB9P2
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Pan troglodytes
Coordinates chr8:108761802-108762071  UCSC
Strand -
Parental Sequence NM_001071799.1
Parental seq. overlap 229 bp
Parental seq. overlap (%) 42.3%
Genomic Region Intergenic
Retrocopy Summary NDUFB9P2, located on chr8:108761802-108762071, is a retrocopy of the parental gene NDUFB9. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NDUFB9
Full Name NADH:ubiquinone oxidoreductase subunit B9
Also known as -
Coordinate chr8:122560127-122570841
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NDUFB9P3
Bonobo Pan paniscus NDUFB9P3
Gorilla Gorilla gorilla NDUFB9P2
Orangutan Pongo abelii NDUFB9P3
Gibbon Nomascus leucogenys NDUFB9P2
Green monkey Chlorocebus sabaeus NDUFB9P2
Crab-eating macaque Macaca fascicularis NDUFB9P3
Rhesus Macaca mulatta NDUFB9P3
Baboon Papio anubis NDUFB9P3
Marmoset Callithrix jacchus NDUFB9P3
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NDUFB9P2
CCACCCAGCTGCTGAGGGGGACAGAGGAAGAATTCTGGCACTGTCAGCCTCCACAGTCATGAATCTTCCATGGCTGTCTGGAGGGTACCTCCAATGAGAGATATAAGTGCTACAAGGTTCCAGAGTGGTTCTTAGATGATTGGCTTCCTTCTGAGAAGGCAATGTATCCTGACTACTGTGCCAAGAGAGAGCAGTGGAAGTAACTGTGGAGAGAAAGCTGGGAGTGAGAAGTTAAGCAGCAGCAAGAAGAAATCCCACCCGGTGGTCCTA
>NM_001071799.1
ATGGCGTTCTTGGCGTCGGGACCCTACCTGACCCATCAGCAAAAGGTGTTGCGGCTTTATAAGCGGGCGCTACGCCACCTCGAGTCGTGGTGCGTCCAGAGAGACAAATACCGATACTTTGCTTGTTTGATGAGAGCCCGGTTTGAAGAACATAAGAATGAAAAGGATATGGCGAAGGCCACCCAGCTGCTGAAGGAGGCCGAGGAAGAATTCTGGTACCGTCAGCATCCACAGCCATACATCTTCCCTGACTCTCCTGGGGGCACCTCCTATGAGAGATACGATTGCTACAAGGTCCCAGAATGGTGCTTAGATGACTGGCATCCTTCTGAGAAGGCAATGTATCCTGATTACTTTGCCAAGAGAGAAAAGTGGAAGAAACTGCGGAGGGAAAGCTGGGAACGAGAGGTTAAGCAGCTGCAGGAGGAAACGCCACCTGGTGGTCCTTTAACTGAAGCTTTGCCCCCTGCCCGAAAGGAAGGTGATTTGCCCCCACTGTGGTGGTATATTGTGACCAGACCCCGGGAGCGGCCCATGTAG

Publications

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